Wall clock time and date at job start Tue Mar 31 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47313 * 2 1 4 4 C 1.53002 * 109.46934 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47110 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47110 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.46702 * 304.53868 * 6 5 4 8 8 O 1.42900 * 109.47162 * 64.54456 * 6 5 4 9 9 C 1.50703 * 109.46853 * 184.54745 * 6 5 4 10 10 O 1.21285 * 119.99899 * 252.41666 * 9 6 5 11 11 N 1.34770 * 120.00445 * 72.41241 * 9 6 5 12 12 C 1.46501 * 119.99914 * 4.99747 * 11 9 6 13 13 C 1.50703 * 109.46977 * 264.12381 * 12 11 9 14 14 H 1.08000 * 119.99961 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00071 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00388 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00112 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46856 * 60.00252 * 17 15 13 19 19 H 1.48498 * 109.47094 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47424 * 300.00445 * 17 15 13 21 21 C 1.46495 * 120.00640 * 184.98752 * 11 9 6 22 22 C 1.53005 * 109.46801 * 84.92617 * 21 11 9 23 23 C 1.53006 * 117.49421 * 116.25964 * 22 21 11 24 24 C 1.52999 * 117.49729 * 184.91607 * 22 21 11 25 25 H 1.09000 * 109.47196 * 59.99504 * 1 2 3 26 26 H 1.08998 * 109.47701 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46601 * 300.00102 * 1 2 3 28 28 H 1.09004 * 109.46601 * 239.99898 * 2 1 3 29 29 H 1.09000 * 109.47196 * 120.00496 * 2 1 3 30 30 H 1.08993 * 109.46873 * 60.00268 * 3 2 1 31 31 H 1.08994 * 109.47086 * 300.00086 * 3 2 1 32 32 H 1.08998 * 109.47657 * 59.99684 * 4 3 2 33 33 H 1.09007 * 109.47166 * 299.99769 * 4 3 2 34 34 H 1.08998 * 109.47359 * 59.99206 * 5 4 3 35 35 H 1.09007 * 109.46676 * 299.99773 * 5 4 3 36 36 H 0.96697 * 113.99937 * 60.00020 * 8 6 5 37 37 H 1.08999 * 109.47125 * 24.11802 * 12 11 9 38 38 H 1.08994 * 109.47554 * 144.11818 * 12 11 9 39 39 H 0.96994 * 120.00340 * 179.97438 * 16 15 13 40 40 H 1.09008 * 109.47239 * 324.93677 * 21 11 9 41 41 H 1.08998 * 109.47820 * 204.93071 * 21 11 9 42 42 H 1.08999 * 115.55036 * 330.59012 * 22 21 11 43 43 H 1.09002 * 117.49392 * 215.00796 * 23 22 21 44 44 H 1.08995 * 117.49903 * 0.02562 * 23 22 21 45 45 H 1.08993 * 117.49992 * 359.97438 * 24 22 21 46 46 H 1.09003 * 117.49638 * 145.00760 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6102 2.8848 -0.0013 7 1 5.9741 2.3014 0.8445 8 8 6.0854 2.3066 -1.2186 9 6 6.1126 4.3010 0.1120 10 8 6.6131 4.8456 -0.8492 11 7 6.0058 4.9625 1.2813 12 6 5.5026 4.2710 2.4708 13 6 4.0268 4.5373 2.6199 14 1 3.5150 5.1598 1.9009 15 6 3.3300 3.9863 3.6743 16 7 3.9532 3.2287 4.5503 17 14 1.5008 4.3170 3.8596 18 1 0.7839 3.8208 2.6575 19 1 0.9904 3.6149 5.0645 20 1 1.2738 5.7774 4.0037 21 6 6.3930 6.3730 1.3631 22 6 5.2183 7.2505 0.9260 23 6 4.6108 8.1892 1.9704 24 6 5.4598 8.7583 0.8309 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9330 0.9286 -0.8908 33 1 3.9337 0.9284 0.8892 34 1 3.7171 3.3983 0.8903 35 1 3.7164 3.3992 -0.8896 36 1 5.7995 2.7753 -2.0146 37 1 5.6695 3.1990 2.3656 38 1 6.0286 4.6357 3.3529 39 1 3.4631 2.8414 5.2923 40 1 7.2453 6.5544 0.7082 41 1 6.6656 6.6161 2.3901 42 1 4.5420 6.8022 0.1981 43 1 3.5347 8.3584 1.9296 44 1 5.0482 8.1819 2.9687 45 1 6.4554 9.1252 1.0802 46 1 4.9423 9.3020 0.0406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823099735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:56 Heat of formation + Delta-G solvation = -94.086571 kcal Electronic energy + Delta-G solvation = -23945.337854 eV Core-core repulsion = 20641.705177 eV Total energy + Delta-G solvation = -3303.632677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.61923 -37.24369 -36.27857 -35.27067 -34.73232 -32.55577 -31.83866 -28.76874 -27.56818 -26.21514 -23.98278 -22.91568 -21.96382 -21.15402 -20.63099 -20.39864 -18.68298 -16.77578 -16.70500 -16.20773 -15.47607 -15.35925 -14.89883 -14.46400 -14.20500 -14.13669 -13.45448 -13.36033 -13.01222 -12.90607 -12.69204 -12.31643 -12.08376 -11.75372 -11.52277 -11.44827 -11.32586 -11.16070 -11.13135 -10.98335 -10.82923 -10.71208 -10.52504 -10.47150 -10.26990 -10.02181 -9.97583 -9.87542 -9.69507 -9.36060 -8.76277 -8.55163 -7.79841 -6.24488 -4.29021 3.18504 3.23014 3.25025 3.30195 3.82623 4.25484 4.32609 4.84098 5.01465 5.10025 5.16682 5.19830 5.30596 5.33566 5.38040 5.49029 5.54216 5.62219 5.77951 5.82835 5.86399 5.94129 6.00823 6.09157 6.12159 6.15531 6.21908 6.30523 6.31082 6.36087 6.42861 6.47482 6.48603 6.63172 6.69728 6.76389 6.82658 7.09574 7.16181 7.46816 7.69380 7.97608 7.98951 8.28524 8.72412 8.92541 9.35631 10.81964 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011697 B = 0.007071 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.142357 B = 3958.657922 C = 5361.600471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.120 4.120 4 C -0.105 4.105 5 C -0.168 4.168 6 C 0.099 3.901 7 H 0.121 0.879 8 O -0.550 6.550 9 C 0.488 3.512 10 O -0.571 6.571 11 N -0.589 5.589 12 C 0.234 3.766 13 C -0.529 4.529 14 H 0.066 0.934 15 C 0.071 3.929 16 N -0.886 5.886 17 Si 0.887 3.113 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.153 3.847 22 C -0.143 4.143 23 C -0.166 4.166 24 C -0.190 4.190 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.134 0.866 35 H 0.052 0.948 36 H 0.374 0.626 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.266 0.734 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 0.233 -5.503 5.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.158 4.158 4 C -0.142 4.142 5 C -0.205 4.205 6 C 0.037 3.963 7 H 0.138 0.862 8 O -0.355 6.355 9 C 0.275 3.725 10 O -0.452 6.452 11 N -0.320 5.320 12 C 0.114 3.886 13 C -0.567 4.567 14 H 0.084 0.916 15 C -0.133 4.133 16 N -0.524 5.524 17 Si 0.714 3.286 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.201 1.201 21 C 0.030 3.970 22 C -0.162 4.162 23 C -0.203 4.203 24 C -0.227 4.227 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.152 0.848 35 H 0.070 0.930 36 H 0.222 0.778 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.618 -0.045 -5.381 5.619 hybrid contribution -1.465 0.619 0.028 1.590 sum -3.082 0.574 -5.353 6.203 Atomic orbital electron populations 1.21782 0.96475 1.01005 1.01704 1.21525 0.95318 0.97563 1.01707 1.21607 0.96037 0.96054 1.02054 1.21401 0.94602 0.96500 1.01728 1.22676 0.93136 0.98529 1.06205 1.21856 0.95005 0.91079 0.88340 0.86184 1.86515 1.77813 1.55595 1.15566 1.21483 0.78626 0.89498 0.82849 1.90594 1.46393 1.70120 1.38109 1.48233 1.62174 1.10332 1.11245 1.19551 0.94699 0.92723 0.81631 1.21312 0.93325 1.31390 1.10690 0.91601 1.24890 0.98332 0.94746 0.95369 1.69899 1.36474 1.32043 1.13949 0.86724 0.85315 0.78684 0.77861 1.19768 1.21203 1.20123 1.20815 0.94855 0.80598 1.00750 1.22577 1.00985 0.90645 1.02033 1.22914 0.98957 1.03880 0.94587 1.22948 1.01217 0.96732 1.01829 0.93047 0.93212 0.92781 0.92447 0.92025 0.91504 0.92714 0.92551 0.91832 0.84842 0.92968 0.77802 0.94205 0.94717 0.92404 0.91109 0.90716 0.88287 0.89433 0.88797 0.89257 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.46 16 2 C -0.12 -1.63 5.93 -26.73 -0.16 -1.79 16 3 C -0.12 -1.83 5.21 -26.73 -0.14 -1.97 16 4 C -0.10 -1.69 5.11 -26.73 -0.14 -1.83 16 5 C -0.17 -3.00 4.78 -26.73 -0.13 -3.13 16 6 C 0.10 1.85 2.59 -27.88 -0.07 1.78 16 7 H 0.12 2.31 6.56 -51.93 -0.34 1.97 16 8 O -0.55 -9.81 12.57 -54.83 -0.69 -10.50 16 9 C 0.49 10.03 6.95 -10.99 -0.08 9.96 16 10 O -0.57 -12.81 15.94 -14.04 -0.22 -13.03 16 11 N -0.59 -11.93 2.47 -175.06 -0.43 -12.36 16 12 C 0.23 5.18 4.79 -5.19 -0.02 5.15 16 13 C -0.53 -12.38 6.55 -34.44 -0.23 -12.60 16 14 H 0.07 1.57 7.47 -52.49 -0.39 1.18 16 15 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -22.91 13.29 55.43 0.74 -22.17 16 17 Si 0.89 19.41 29.54 -169.99 -5.02 14.38 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 C 0.15 2.81 5.71 -4.04 -0.02 2.78 16 22 C -0.14 -2.49 5.83 -90.61 -0.53 -3.01 16 23 C -0.17 -2.63 10.18 -26.69 -0.27 -2.91 16 24 C -0.19 -2.72 10.25 -26.69 -0.27 -2.99 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.86 7.81 -51.93 -0.41 0.45 16 33 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 34 H 0.13 2.74 4.14 -51.93 -0.22 2.52 16 35 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.37 5.81 8.71 45.56 0.40 6.21 16 37 H 0.04 0.92 5.93 -51.93 -0.31 0.61 16 38 H 0.03 0.82 7.95 -51.93 -0.41 0.41 16 39 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 40 H 0.07 1.30 7.51 -51.92 -0.39 0.91 16 41 H 0.07 1.30 7.63 -51.93 -0.40 0.90 16 42 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 1.47 8.03 -51.93 -0.42 1.06 16 45 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -26.35 370.29 -9.35 -35.70 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -7.51 Total: 12.80 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -1.79 Total: -10.39 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.30 Total: -34.53 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.91 Total: -23.54 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -26.35 -9.35 -35.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823099735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.386 kcal (2) G-P(sol) polarization free energy of solvation -26.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds