Wall clock time and date at job start Tue Mar 31 2020 06:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47266 * 2 1 4 4 C 1.53000 * 109.47266 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46927 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46927 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.47156 * 55.92683 * 6 5 4 8 8 O 1.42904 * 109.47278 * 295.92380 * 6 5 4 9 9 C 1.50703 * 109.47119 * 175.92453 * 6 5 4 10 10 O 1.21276 * 119.99968 * 99.93376 * 9 6 5 11 11 N 1.34778 * 119.99944 * 279.92588 * 9 6 5 12 12 C 1.46494 * 120.00262 * 184.42036 * 11 9 6 13 13 C 1.50703 * 109.47433 * 270.00622 * 12 11 9 14 14 H 1.07993 * 119.99683 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99741 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00388 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99680 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46892 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46864 * 120.00163 * 17 15 13 20 20 H 1.48501 * 109.47347 * 240.00302 * 17 15 13 21 21 C 1.46505 * 119.99832 * 4.42951 * 11 9 6 22 22 C 1.52995 * 109.46866 * 264.72052 * 21 11 9 23 23 C 1.53005 * 117.49916 * 243.74586 * 22 21 11 24 24 C 1.53007 * 117.49715 * 175.08903 * 22 21 11 25 25 H 1.09004 * 109.47112 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46941 * 299.99987 * 1 2 3 27 27 H 1.09005 * 109.46820 * 59.99722 * 1 2 3 28 28 H 1.09009 * 109.47113 * 240.00357 * 2 1 3 29 29 H 1.08997 * 109.47079 * 120.00092 * 2 1 3 30 30 H 1.09007 * 109.47236 * 59.99936 * 3 2 1 31 31 H 1.09005 * 109.47428 * 299.99905 * 3 2 1 32 32 H 1.08996 * 109.47009 * 60.00551 * 4 3 2 33 33 H 1.08997 * 109.47079 * 300.00092 * 4 3 2 34 34 H 1.08993 * 109.47583 * 60.00058 * 5 4 3 35 35 H 1.08997 * 109.47032 * 299.99773 * 5 4 3 36 36 H 0.96698 * 113.99782 * 300.00508 * 8 6 5 37 37 H 1.09003 * 109.46807 * 30.00874 * 12 11 9 38 38 H 1.09001 * 109.47315 * 150.00410 * 12 11 9 39 39 H 0.97007 * 120.00096 * 180.02562 * 16 15 13 40 40 H 1.08991 * 109.47204 * 24.72084 * 21 11 9 41 41 H 1.09001 * 109.46901 * 144.72415 * 21 11 9 42 42 H 1.08997 * 115.55495 * 29.41659 * 22 21 11 43 43 H 1.09006 * 117.49703 * 0.02562 * 23 22 21 44 44 H 1.09003 * 117.49907 * 145.02065 * 23 22 21 45 45 H 1.09003 * 117.49501 * 214.97497 * 24 22 21 46 46 H 1.08999 * 117.49880 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6100 2.8850 0.0013 7 1 5.9733 2.3096 -0.8502 8 8 6.0864 2.2954 1.2128 9 6 6.1123 4.3023 -0.0991 10 8 6.4853 4.8854 0.8968 11 7 6.1473 4.9217 -1.2955 12 6 6.7250 6.2631 -1.4093 13 6 5.6481 7.2942 -1.1898 14 1 4.6348 6.9816 -0.9855 15 6 5.9568 8.6367 -1.2488 16 7 7.1908 9.0174 -1.4971 17 14 4.6217 9.9148 -0.9773 18 1 3.3285 9.2324 -0.7182 19 1 4.9769 10.7613 0.1900 20 1 4.4986 10.7668 -2.1874 21 6 5.6073 4.2536 -2.4823 22 6 6.7405 3.5490 -3.2307 23 6 7.0655 4.0383 -4.6435 24 6 6.3625 2.6936 -4.4417 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 3.7163 3.3986 0.8912 35 1 3.7170 3.3990 -0.8887 36 1 5.8010 2.7566 2.0133 37 1 7.5055 6.3874 -0.6587 38 1 7.1533 6.3911 -2.4035 39 1 7.4081 9.9619 -1.5382 40 1 4.8612 3.5196 -2.1781 41 1 5.1444 4.9927 -3.1363 42 1 7.5710 3.2076 -2.6129 43 1 6.4723 4.8625 -5.0396 44 1 8.1098 4.0184 -4.9552 45 1 6.9448 1.7896 -4.6207 46 1 5.3066 2.6325 -4.7049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823099737.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:00 Heat of formation + Delta-G solvation = -92.006451 kcal Electronic energy + Delta-G solvation = -23226.418127 eV Core-core repulsion = 19922.875651 eV Total energy + Delta-G solvation = -3303.542476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.71053 -37.41193 -36.73525 -35.59222 -34.39612 -32.73658 -32.15914 -29.00432 -27.54161 -26.19548 -24.63177 -22.59637 -22.17949 -21.55230 -21.11288 -20.54257 -18.86720 -17.06571 -16.62282 -16.41197 -15.73521 -15.55951 -14.89822 -14.72683 -14.45797 -14.14776 -13.71092 -13.58095 -13.33743 -13.24439 -12.80820 -12.43516 -12.30125 -11.93148 -11.88630 -11.49663 -11.38078 -11.33936 -11.24989 -11.13845 -10.97186 -10.92677 -10.85877 -10.65957 -10.55613 -10.32257 -10.25460 -10.13025 -9.69688 -9.60449 -8.68865 -8.44231 -7.71081 -6.04901 -4.09456 3.26314 3.28479 3.36401 3.39994 3.75253 4.03631 4.42345 4.51242 4.67477 4.78293 4.84387 4.89760 5.01412 5.06870 5.07942 5.15268 5.25567 5.29668 5.35992 5.43334 5.56553 5.62844 5.66478 5.67202 5.72890 5.75852 5.83479 5.90407 5.95416 5.98827 6.00866 6.07831 6.13139 6.27158 6.27202 6.34445 6.46521 7.05645 7.43004 7.51895 7.73908 7.91365 8.22842 8.37600 8.87494 9.02933 9.55395 11.03266 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012265 B = 0.004741 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.391104 B = 5904.930297 C = 6682.196176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.113 4.113 5 C -0.149 4.149 6 C 0.090 3.910 7 H 0.115 0.885 8 O -0.546 6.546 9 C 0.478 3.522 10 O -0.536 6.536 11 N -0.589 5.589 12 C 0.247 3.753 13 C -0.524 4.524 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.284 1.284 21 C 0.134 3.866 22 C -0.169 4.169 23 C -0.173 4.173 24 C -0.181 4.181 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.381 0.619 37 H 0.040 0.960 38 H 0.034 0.966 39 H 0.262 0.738 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.437 -17.099 -2.914 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.150 4.150 5 C -0.187 4.187 6 C 0.028 3.972 7 H 0.133 0.867 8 O -0.351 6.351 9 C 0.264 3.736 10 O -0.414 6.414 11 N -0.321 5.321 12 C 0.128 3.872 13 C -0.563 4.563 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.210 1.210 21 C 0.010 3.990 22 C -0.189 4.189 23 C -0.210 4.210 24 C -0.219 4.219 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.230 0.770 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.844 -17.017 -2.810 18.947 hybrid contribution -0.858 1.322 0.327 1.610 sum -8.702 -15.694 -2.483 18.116 Atomic orbital electron populations 1.21786 0.96124 1.01346 1.01823 1.21529 0.95621 0.97108 1.01938 1.21645 0.95548 0.96557 1.02185 1.21529 0.94914 0.95916 1.02671 1.22290 0.94385 0.98097 1.03902 1.21945 0.93736 0.92237 0.89324 0.86729 1.86497 1.77646 1.55385 1.15548 1.21246 0.79732 0.88581 0.84077 1.90673 1.48527 1.66707 1.35485 1.48219 1.58977 1.18880 1.06011 1.19280 0.94312 0.75736 0.97914 1.21450 0.95393 0.90838 1.48633 0.92481 1.24928 0.95574 0.98442 0.95141 1.69945 1.17879 1.16226 1.49256 0.86469 0.81897 0.81412 0.77792 1.19843 1.20883 1.20967 1.21204 0.93577 0.96228 0.87973 1.22893 1.01807 1.03289 0.90881 1.23008 1.01305 0.97369 0.99282 1.22940 1.01167 0.94869 1.02891 0.92997 0.92813 0.92780 0.92099 0.92110 0.92039 0.91979 0.91896 0.91239 0.90931 0.90187 0.76985 0.94158 0.94758 0.92792 0.90633 0.89803 0.87868 0.88418 0.89113 0.89109 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.12 -1.13 5.21 -26.73 -0.14 -1.27 16 4 C -0.11 -1.16 5.10 -26.73 -0.14 -1.30 16 5 C -0.15 -1.90 4.54 -26.73 -0.12 -2.02 16 6 C 0.09 1.38 2.55 -27.88 -0.07 1.31 16 7 H 0.12 1.59 7.07 -51.93 -0.37 1.23 16 8 O -0.55 -8.48 12.62 -54.29 -0.69 -9.17 16 9 C 0.48 9.89 6.93 -10.98 -0.08 9.81 16 10 O -0.54 -13.55 15.96 -13.50 -0.22 -13.76 16 11 N -0.59 -12.26 2.46 -175.06 -0.43 -12.69 16 12 C 0.25 6.43 5.15 -5.20 -0.03 6.40 16 13 C -0.52 -14.78 9.39 -34.44 -0.32 -15.10 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.19 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 17 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.13 2.14 5.23 -4.04 -0.02 2.12 16 22 C -0.17 -2.38 5.71 -90.62 -0.52 -2.90 16 23 C -0.17 -2.27 10.18 -26.69 -0.27 -2.54 16 24 C -0.18 -2.00 10.25 -26.69 -0.27 -2.27 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.74 7.80 -51.93 -0.40 0.34 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.02 6.19 -51.93 -0.32 0.70 16 36 H 0.38 5.34 8.65 45.56 0.39 5.73 16 37 H 0.04 1.20 7.49 -51.93 -0.39 0.81 16 38 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.08 1.00 4.54 -51.93 -0.24 0.76 16 41 H 0.08 1.40 7.84 -51.93 -0.41 0.99 16 42 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.10 1.32 8.03 -51.93 -0.42 0.90 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 374.37 15.07 5.64 5.64 Total: -1.00 -32.59 374.37 -9.45 -42.04 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.61 Total: 5.08 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.87 Total: -8.09 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.31 Total: -38.54 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.90 Total: -22.93 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.59 -9.45 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823099737.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.967 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds