Wall clock time and date at job start Tue Mar 31 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47068 * 2 1 4 4 C 1.53004 * 109.46843 * 184.99938 * 3 2 1 5 5 C 1.53002 * 109.46843 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47029 * 60.00017 * 5 4 3 7 7 N 1.46898 * 109.47154 * 59.99959 * 6 5 4 8 8 C 1.46898 * 110.99960 * 59.46542 * 7 6 5 9 9 C 1.53007 * 109.47035 * 174.63595 * 8 7 6 10 10 C 1.52999 * 109.47109 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46604 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00621 * 0.02562 * 11 10 9 13 13 C 1.37890 * 119.99625 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99739 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99911 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47410 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47177 * 119.99986 * 15 13 11 18 18 H 1.48505 * 109.47259 * 240.00126 * 15 13 11 19 19 C 1.50702 * 109.46635 * 179.97438 * 6 5 4 20 20 O 1.20819 * 120.00084 * 24.10927 * 19 6 5 21 21 O 1.34232 * 119.99902 * 204.10069 * 19 6 5 22 22 C 1.53001 * 109.46780 * 299.99659 * 6 5 4 23 23 C 1.52996 * 109.47323 * 60.00478 * 22 6 5 24 24 H 1.08991 * 109.47224 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47233 * 300.00480 * 1 2 3 26 26 H 1.09001 * 109.47038 * 59.99903 * 1 2 3 27 27 H 1.08994 * 109.47155 * 239.99826 * 2 1 3 28 28 H 1.08998 * 109.46852 * 119.99593 * 2 1 3 29 29 H 1.09000 * 109.47138 * 304.99441 * 3 2 1 30 30 H 1.09000 * 109.47235 * 59.99904 * 4 3 2 31 31 H 1.09000 * 109.46848 * 299.99681 * 4 3 2 32 32 H 1.09000 * 109.47138 * 299.99503 * 5 4 3 33 33 H 1.08999 * 109.47007 * 179.97438 * 5 4 3 34 34 H 1.00903 * 110.99729 * 183.42232 * 7 6 5 35 35 H 1.08998 * 109.47169 * 294.63649 * 8 7 6 36 36 H 1.09002 * 109.47147 * 54.64413 * 8 7 6 37 37 H 1.09007 * 109.46845 * 300.00543 * 9 8 7 38 38 H 1.08999 * 109.46965 * 59.99839 * 9 8 7 39 39 H 1.08998 * 109.47057 * 300.00030 * 10 9 8 40 40 H 1.08997 * 109.46696 * 60.00214 * 10 9 8 41 41 H 0.96999 * 119.99905 * 180.02562 * 14 13 11 42 42 H 0.96694 * 116.99980 * 180.02562 * 21 19 6 43 43 H 1.09006 * 109.46534 * 179.97438 * 22 6 5 44 44 H 1.08994 * 109.47437 * 299.99735 * 22 6 5 45 45 H 1.08997 * 109.47408 * 179.97438 * 23 22 6 46 46 H 1.09003 * 109.47409 * 59.99443 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 -0.1257 5 6 4.0750 2.8868 -0.1251 6 6 3.6702 3.5703 1.1826 7 7 4.2559 2.8433 2.3168 8 6 5.7215 2.8136 2.2227 9 6 6.3005 2.1680 3.4833 10 6 7.8271 2.1377 3.3856 11 6 8.3972 1.5013 4.6270 12 1 7.7369 1.1529 5.4073 13 6 9.7621 1.3628 4.7660 14 7 10.5662 1.7865 3.8155 15 14 10.4688 0.5733 6.3044 16 1 9.3617 0.1842 7.2145 17 1 11.2471 -0.6341 5.9282 18 1 11.3594 1.5416 6.9933 19 6 4.1731 4.9909 1.1834 20 8 4.3903 5.5555 0.1376 21 8 4.3797 5.6290 2.3461 22 6 2.1453 3.5684 1.3082 23 6 1.6353 2.1260 1.3076 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6055 1.9815 -0.8419 30 1 3.8533 0.9569 -1.0571 31 1 3.9995 0.9053 0.7162 32 1 3.6404 3.4262 -0.9667 33 1 5.1613 2.8881 -0.2142 34 1 3.9578 3.2419 3.1945 35 1 6.0178 2.2337 1.3486 36 1 6.1003 3.8314 2.1291 37 1 6.0041 2.7480 4.3574 38 1 5.9217 1.1503 3.5771 39 1 8.1238 1.5580 2.5115 40 1 8.2054 3.1556 3.2921 41 1 11.5263 1.6888 3.9132 42 1 4.7024 6.5392 2.2961 43 1 1.8570 4.0550 2.2401 44 1 1.7108 4.1079 0.4667 45 1 0.5490 2.1247 1.3975 46 1 2.0698 1.5865 2.1492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829106698.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:21 Heat of formation + Delta-G solvation = -133.705419 kcal Electronic energy + Delta-G solvation = -23495.964650 eV Core-core repulsion = 20190.613971 eV Total energy + Delta-G solvation = -3305.350679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.99763 -38.75625 -36.21549 -36.01829 -34.02798 -32.51025 -31.11770 -30.61564 -28.51772 -25.94921 -24.71925 -23.15909 -22.34800 -22.25792 -20.35450 -20.10087 -19.07770 -17.99084 -17.08984 -16.33441 -15.90384 -15.38044 -15.10516 -14.78253 -14.43575 -14.19378 -13.72037 -13.68735 -13.63379 -13.21606 -12.74914 -12.35247 -12.23180 -12.17288 -11.97033 -11.68404 -11.59336 -11.58919 -11.39430 -11.08482 -10.98777 -10.90747 -10.76095 -10.57010 -10.51671 -10.43048 -10.14652 -9.96606 -9.68760 -9.35056 -9.04494 -8.37404 -8.33703 -5.98893 -4.01002 2.15440 2.94654 3.31804 3.39256 3.43526 4.19804 4.46901 4.48197 4.59286 4.70224 4.90195 4.99874 5.12536 5.28135 5.31729 5.37068 5.42640 5.43981 5.49120 5.54010 5.71312 5.71759 5.76653 5.82444 5.85424 5.95063 5.98025 6.05782 6.14249 6.20196 6.28353 6.28865 6.33139 6.45868 6.56684 6.67544 6.73901 7.11075 7.15348 7.49281 7.69112 7.83215 7.85362 8.01341 8.44189 9.06459 9.63047 11.12577 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.003932 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.799563 B = 7119.432517 C = 8108.245103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.085 4.085 4 C -0.106 4.106 5 C -0.098 4.098 6 C 0.135 3.865 7 N -0.658 5.658 8 C 0.053 3.947 9 C -0.105 4.105 10 C 0.022 3.978 11 C -0.518 4.518 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.451 3.549 20 O -0.519 6.519 21 O -0.515 6.515 22 C -0.104 4.104 23 C -0.104 4.104 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.349 0.651 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.016 0.984 40 H 0.013 0.987 41 H 0.259 0.741 42 H 0.406 0.594 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.233 2.154 -7.310 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.104 4.104 4 C -0.144 4.144 5 C -0.136 4.136 6 C 0.041 3.959 7 N -0.290 5.290 8 C -0.075 4.075 9 C -0.143 4.143 10 C -0.015 4.015 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C 0.291 3.709 20 O -0.406 6.406 21 O -0.326 6.326 22 C -0.141 4.141 23 C -0.141 4.141 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.169 0.831 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.265 0.735 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.212 1.301 -7.911 21.743 hybrid contribution 1.127 1.376 0.964 2.023 sum -19.084 2.676 -6.947 20.485 Atomic orbital electron populations 1.21824 0.96291 1.01257 1.01675 1.21549 0.95439 0.96504 1.02170 1.21173 0.95776 0.95713 0.97710 1.21498 0.94838 0.95395 1.02625 1.21509 1.01879 0.96437 0.93749 1.21123 0.96319 0.82808 0.95647 1.60709 1.10097 1.54407 1.03830 1.22285 0.84773 0.99113 1.01304 1.21616 0.99150 0.99556 0.93973 1.19055 0.88266 0.96998 0.97194 1.21282 0.91585 1.38975 1.03761 0.92586 1.25037 0.97328 0.95746 0.96441 1.69979 1.03340 1.47276 1.32965 0.86544 0.79093 0.79066 0.83351 1.19707 1.21026 1.21081 1.25282 0.73734 0.90857 0.81007 1.90674 1.48063 1.68353 1.33528 1.84571 1.78814 1.33002 1.36220 1.21568 0.90990 0.99172 1.02414 1.21514 0.99758 0.94072 0.98798 0.93124 0.92502 0.93099 0.92233 0.91595 0.91847 0.92113 0.89783 0.90894 0.91052 0.83116 0.90921 0.95696 0.93460 0.92386 0.96597 0.96910 0.93100 0.73506 0.91155 0.91278 0.91963 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.67 37.16 0.36 -0.79 16 2 C -0.12 -1.02 5.40 -26.73 -0.14 -1.17 16 3 C -0.09 -0.79 2.19 -90.62 -0.20 -0.99 16 4 C -0.11 -1.17 5.05 -26.73 -0.13 -1.30 16 5 C -0.10 -1.23 3.86 -26.73 -0.10 -1.33 16 6 C 0.13 1.66 0.53 -132.75 -0.07 1.59 16 7 N -0.66 -8.82 4.48 -101.13 -0.45 -9.27 16 8 C 0.05 0.90 4.90 -3.82 -0.02 0.88 16 9 C -0.10 -2.12 5.36 -26.73 -0.14 -2.26 16 10 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 11 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 C 0.45 6.28 5.79 36.01 0.21 6.49 16 20 O -0.52 -8.55 16.84 -18.74 -0.32 -8.87 16 21 O -0.51 -6.22 12.38 -39.26 -0.49 -6.70 16 22 C -0.10 -1.03 4.84 -26.73 -0.13 -1.16 16 23 C -0.10 -0.95 4.80 -26.73 -0.13 -1.08 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.06 7.60 -51.93 -0.39 0.66 16 32 H 0.07 0.90 7.88 -51.93 -0.41 0.49 16 33 H 0.07 1.01 6.51 -51.93 -0.34 0.68 16 34 H 0.35 4.55 8.30 -39.29 -0.33 4.22 16 35 H 0.07 1.26 6.60 -51.93 -0.34 0.92 16 36 H 0.02 0.45 6.59 -51.93 -0.34 0.11 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.41 3.40 9.10 45.56 0.41 3.81 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 46 H 0.08 0.85 7.60 -51.93 -0.39 0.46 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -31.77 356.84 -8.64 -40.41 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.43 Total: 2.95 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -1.05 Total: -14.20 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.28 Total: -35.68 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.80 Total: -15.57 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.77 -8.64 -40.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829106698.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.296 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds