Wall clock time and date at job start Tue Mar 31 2020 05:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47068 * 2 1 4 4 C 1.53004 * 109.46843 * 184.99938 * 3 2 1 5 5 C 1.53002 * 109.46843 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47029 * 60.00017 * 5 4 3 7 7 N 1.46898 * 109.47154 * 59.99959 * 6 5 4 8 8 C 1.46898 * 110.99960 * 59.46542 * 7 6 5 9 9 C 1.53007 * 109.47035 * 174.63595 * 8 7 6 10 10 C 1.52999 * 109.47109 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46604 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00621 * 0.02562 * 11 10 9 13 13 C 1.37890 * 119.99625 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99739 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99911 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47410 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47177 * 119.99986 * 15 13 11 18 18 H 1.48505 * 109.47259 * 240.00126 * 15 13 11 19 19 C 1.50702 * 109.46635 * 179.97438 * 6 5 4 20 20 O 1.20819 * 120.00084 * 24.10927 * 19 6 5 21 21 O 1.34232 * 119.99902 * 204.10069 * 19 6 5 22 22 C 1.53001 * 109.46780 * 299.99659 * 6 5 4 23 23 C 1.52996 * 109.47323 * 60.00478 * 22 6 5 24 24 H 1.08991 * 109.47224 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47233 * 300.00480 * 1 2 3 26 26 H 1.09001 * 109.47038 * 59.99903 * 1 2 3 27 27 H 1.08994 * 109.47155 * 239.99826 * 2 1 3 28 28 H 1.08998 * 109.46852 * 119.99593 * 2 1 3 29 29 H 1.09000 * 109.47138 * 304.99441 * 3 2 1 30 30 H 1.09000 * 109.47235 * 59.99904 * 4 3 2 31 31 H 1.09000 * 109.46848 * 299.99681 * 4 3 2 32 32 H 1.09000 * 109.47138 * 299.99503 * 5 4 3 33 33 H 1.08999 * 109.47007 * 179.97438 * 5 4 3 34 34 H 1.00903 * 110.99729 * 183.42232 * 7 6 5 35 35 H 1.08998 * 109.47169 * 294.63649 * 8 7 6 36 36 H 1.09002 * 109.47147 * 54.64413 * 8 7 6 37 37 H 1.09007 * 109.46845 * 300.00543 * 9 8 7 38 38 H 1.08999 * 109.46965 * 59.99839 * 9 8 7 39 39 H 1.08998 * 109.47057 * 300.00030 * 10 9 8 40 40 H 1.08997 * 109.46696 * 60.00214 * 10 9 8 41 41 H 0.96999 * 119.99905 * 180.02562 * 14 13 11 42 42 H 0.96694 * 116.99980 * 180.02562 * 21 19 6 43 43 H 1.09006 * 109.46534 * 179.97438 * 22 6 5 44 44 H 1.08994 * 109.47437 * 299.99735 * 22 6 5 45 45 H 1.08997 * 109.47408 * 179.97438 * 23 22 6 46 46 H 1.09003 * 109.47409 * 59.99443 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 -0.1257 5 6 4.0750 2.8868 -0.1251 6 6 3.6702 3.5703 1.1826 7 7 4.2559 2.8433 2.3168 8 6 5.7215 2.8136 2.2227 9 6 6.3005 2.1680 3.4833 10 6 7.8271 2.1377 3.3856 11 6 8.3972 1.5013 4.6270 12 1 7.7369 1.1529 5.4073 13 6 9.7621 1.3628 4.7660 14 7 10.5662 1.7865 3.8155 15 14 10.4688 0.5733 6.3044 16 1 9.3617 0.1842 7.2145 17 1 11.2471 -0.6341 5.9282 18 1 11.3594 1.5416 6.9933 19 6 4.1731 4.9909 1.1834 20 8 4.3903 5.5555 0.1376 21 8 4.3797 5.6290 2.3461 22 6 2.1453 3.5684 1.3082 23 6 1.6353 2.1260 1.3076 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6055 1.9815 -0.8419 30 1 3.8533 0.9569 -1.0571 31 1 3.9995 0.9053 0.7162 32 1 3.6404 3.4262 -0.9667 33 1 5.1613 2.8881 -0.2142 34 1 3.9578 3.2419 3.1945 35 1 6.0178 2.2337 1.3486 36 1 6.1003 3.8314 2.1291 37 1 6.0041 2.7480 4.3574 38 1 5.9217 1.1503 3.5771 39 1 8.1238 1.5580 2.5115 40 1 8.2054 3.1556 3.2921 41 1 11.5263 1.6888 3.9132 42 1 4.7024 6.5392 2.2961 43 1 1.8570 4.0550 2.2401 44 1 1.7108 4.1079 0.4667 45 1 0.5490 2.1247 1.3975 46 1 2.0698 1.5865 2.1492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829106698.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:20 Heat of formation + Delta-G solvation = -153.164095 kcal Electronic energy + Delta-G solvation = -23496.808442 eV Core-core repulsion = 20190.613971 eV Total energy + Delta-G solvation = -3306.194471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.06171 -39.72018 -37.40893 -37.11561 -35.66095 -34.10228 -32.19238 -31.85020 -29.66700 -27.62033 -25.75196 -24.47718 -23.67000 -23.12122 -21.89664 -21.09263 -20.05540 -19.09273 -18.47808 -18.16400 -16.99640 -16.60223 -16.52518 -16.11853 -15.55521 -15.51558 -14.79823 -14.64812 -14.55308 -14.30247 -14.13407 -13.72090 -13.52223 -13.48440 -13.07086 -12.89205 -12.80379 -12.75546 -12.64583 -12.46608 -12.26340 -12.21960 -11.96204 -11.92008 -11.62906 -11.53872 -11.38582 -11.26210 -11.08232 -10.96186 -10.78392 -10.55988 -9.57243 -8.19902 -6.30929 1.05187 1.40737 1.41058 1.54685 1.96229 2.41400 3.05326 3.13634 3.53797 3.67758 3.91601 4.10031 4.17318 4.21333 4.29063 4.35969 4.45446 4.55429 4.56640 4.62793 4.66913 4.73069 4.82151 4.88708 4.94981 4.97413 5.02602 5.13911 5.22474 5.24464 5.24852 5.31436 5.41198 5.42800 5.44649 5.47521 5.53160 5.62164 5.74034 5.78117 5.84313 5.86656 6.25570 6.34939 6.84739 6.86753 7.38620 8.92357 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.003932 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.799563 B = 7119.432517 C = 8108.245103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.081 4.081 4 C -0.102 4.102 5 C -0.098 4.098 6 C 0.135 3.865 7 N -0.644 5.644 8 C 0.070 3.930 9 C -0.088 4.088 10 C 0.026 3.974 11 C -0.539 4.539 12 H 0.063 0.937 13 C -0.003 4.003 14 N -0.936 5.936 15 Si 0.966 3.034 16 H -0.259 1.259 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.451 3.549 20 O -0.550 6.550 21 O -0.513 6.513 22 C -0.099 4.099 23 C -0.100 4.100 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.356 0.644 35 H 0.064 0.936 36 H 0.011 0.989 37 H 0.054 0.946 38 H 0.061 0.939 39 H -0.011 1.011 40 H -0.015 1.015 41 H 0.263 0.737 42 H 0.422 0.578 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.152 1.668 -6.234 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.099 4.099 4 C -0.139 4.139 5 C -0.136 4.136 6 C 0.041 3.959 7 N -0.277 5.277 8 C -0.059 4.059 9 C -0.126 4.126 10 C -0.012 4.012 11 C -0.577 4.577 12 H 0.081 0.919 13 C -0.200 4.200 14 N -0.576 5.576 15 Si 0.791 3.209 16 H -0.183 1.183 17 H -0.204 1.204 18 H -0.205 1.205 19 C 0.293 3.707 20 O -0.439 6.439 21 O -0.326 6.326 22 C -0.136 4.136 23 C -0.137 4.137 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.176 0.824 35 H 0.083 0.917 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.008 0.992 40 H 0.003 0.997 41 H 0.071 0.929 42 H 0.283 0.717 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.154 0.826 -6.815 23.194 hybrid contribution 1.749 1.575 0.600 2.429 sum -20.405 2.401 -6.215 21.465 Atomic orbital electron populations 1.21803 0.95147 1.01713 1.02136 1.21518 0.96393 0.95779 1.01799 1.21146 0.94158 0.96440 0.98203 1.21458 0.96307 0.94016 1.02135 1.21499 1.00388 0.97573 0.94098 1.21253 0.98032 0.81797 0.94798 1.60620 1.07532 1.54819 1.04706 1.21925 0.86959 0.97758 0.99244 1.21343 0.95217 1.00270 0.95802 1.18958 0.92169 0.94562 0.95518 1.21726 0.92252 1.39116 1.04616 0.91904 1.26017 0.97839 0.96223 0.99962 1.70116 1.03780 1.48482 1.35247 0.85379 0.78453 0.78031 0.79067 1.18321 1.20433 1.20498 1.25556 0.73012 0.91304 0.80876 1.90663 1.49490 1.69171 1.34568 1.84532 1.78459 1.34300 1.35306 1.21598 0.88571 1.00063 1.03410 1.21497 1.00870 0.93151 0.98167 0.92751 0.92036 0.92596 0.92278 0.92383 0.91106 0.91716 0.91443 0.90643 0.93504 0.82367 0.91723 0.97039 0.92758 0.92020 0.99217 0.99661 0.92853 0.71652 0.89964 0.90482 0.89967 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.67 71.98 0.70 -1.20 16 2 C -0.12 -1.81 5.40 30.60 0.17 -1.65 16 3 C -0.08 -1.36 2.19 -10.79 -0.02 -1.38 16 4 C -0.10 -2.18 5.05 30.60 0.15 -2.03 16 5 C -0.10 -2.44 3.86 30.60 0.12 -2.32 16 6 C 0.13 3.20 0.53 2.78 0.00 3.20 16 7 N -0.64 -16.71 4.48 -473.88 -2.13 -18.84 16 8 C 0.07 2.39 4.90 86.31 0.42 2.81 16 9 C -0.09 -3.58 5.36 30.60 0.16 -3.41 16 10 C 0.03 1.36 4.97 29.85 0.15 1.51 16 11 C -0.54 -30.87 9.11 25.60 0.23 -30.64 16 12 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 13 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 14 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 15 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 16 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 19 C 0.45 12.27 5.79 71.24 0.41 12.69 16 20 O -0.55 -18.06 16.84 21.99 0.37 -17.69 16 21 O -0.51 -11.83 12.38 -51.43 -0.64 -12.46 16 22 C -0.10 -1.74 4.84 30.59 0.15 -1.60 16 23 C -0.10 -1.58 4.80 30.59 0.15 -1.44 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.72 6.56 -2.39 -0.02 0.70 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.68 7.60 -2.39 -0.02 1.67 16 32 H 0.07 1.84 7.88 -2.39 -0.02 1.82 16 33 H 0.05 1.38 6.51 -2.39 -0.02 1.36 16 34 H 0.36 8.65 8.30 -89.69 -0.74 7.91 16 35 H 0.06 2.32 6.60 -2.39 -0.02 2.31 16 36 H 0.01 0.42 6.59 -2.39 -0.02 0.41 16 37 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 39 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 41 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 42 H 0.42 6.63 9.10 -74.06 -0.67 5.95 16 43 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.08 1.03 6.56 -2.39 -0.02 1.01 16 46 H 0.07 1.35 7.60 -2.39 -0.02 1.33 16 Total: -1.00 -68.69 356.84 2.71 -65.98 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.46 Total: 19.15 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 3.25 Total: -25.17 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -1.84 Total: -76.31 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.27 Total: -30.15 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -68.69 2.71 -65.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829106698.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.188 kcal (2) G-P(sol) polarization free energy of solvation -68.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds