Wall clock time and date at job start Tue Mar 31 2020 06:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46985 * 2 1 4 4 C 1.52999 * 109.47076 * 119.99890 * 2 1 3 5 5 C 1.53005 * 109.47038 * 175.00505 * 4 2 1 6 6 N 1.46501 * 109.46971 * 180.02562 * 5 4 2 7 7 C 1.46503 * 119.99876 * 270.00025 * 6 5 4 8 8 C 1.50703 * 109.46631 * 270.00370 * 7 6 5 9 9 H 1.07994 * 120.00208 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99592 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99496 * 179.97438 * 10 8 7 12 12 Si 1.86792 * 120.00055 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.46837 * 90.00473 * 12 10 8 14 14 H 1.48501 * 109.47109 * 210.00262 * 12 10 8 15 15 H 1.48498 * 109.47530 * 330.00289 * 12 10 8 16 16 C 1.34771 * 120.00300 * 89.99440 * 6 5 4 17 17 O 1.21512 * 120.00188 * 0.02562 * 16 6 5 18 18 O 1.34634 * 120.00145 * 179.97438 * 16 6 5 19 19 C 1.45203 * 117.00173 * 180.02562 * 18 16 6 20 20 C 1.54894 * 110.48415 * 93.24213 * 19 18 16 21 21 C 1.55238 * 102.58338 * 156.67741 * 20 19 18 22 22 C 1.54266 * 104.23333 * 322.08174 * 21 20 19 23 23 C 1.53869 * 106.59800 * 23.61579 * 22 21 20 24 24 H 1.08993 * 109.47291 * 299.99655 * 1 2 3 25 25 H 1.08997 * 109.47389 * 60.00516 * 1 2 3 26 26 H 1.09001 * 109.46609 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47408 * 239.99845 * 2 1 3 28 28 H 1.09005 * 109.46860 * 59.99621 * 3 2 1 29 29 H 1.08993 * 109.47552 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47355 * 300.00127 * 3 2 1 31 31 H 1.08998 * 109.47281 * 55.00546 * 4 2 1 32 32 H 1.08996 * 109.47194 * 295.00336 * 4 2 1 33 33 H 1.08998 * 109.47050 * 59.99901 * 5 4 2 34 34 H 1.09001 * 109.46548 * 299.99947 * 5 4 2 35 35 H 1.08999 * 109.47227 * 29.99717 * 7 6 5 36 36 H 1.08996 * 109.47440 * 150.00290 * 7 6 5 37 37 H 0.97000 * 119.99674 * 179.97438 * 11 10 8 38 38 H 1.09002 * 110.43256 * 330.70061 * 19 18 16 39 39 H 1.08996 * 110.75388 * 275.06094 * 20 19 18 40 40 H 1.08993 * 110.76071 * 38.44320 * 20 19 18 41 41 H 1.09005 * 110.46917 * 203.39204 * 21 20 19 42 42 H 1.09007 * 110.58541 * 80.83124 * 21 20 19 43 43 H 1.08999 * 110.03060 * 264.32313 * 22 21 20 44 44 H 1.09006 * 110.06829 * 142.91691 * 22 21 20 45 45 H 1.09001 * 110.02983 * 240.71432 * 23 22 21 46 46 H 1.08996 * 110.07773 * 119.30576 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8309 1.1880 6 7 4.0531 -1.5220 2.3839 7 6 4.4014 -0.7548 3.5824 8 6 5.8553 -0.3628 3.5229 9 1 6.4595 -0.6562 2.6772 10 6 6.4144 0.3695 4.5487 11 7 7.6834 0.7112 4.4970 12 14 5.3695 0.8763 6.0118 13 1 5.4390 -0.1757 7.0577 14 1 5.8787 2.1574 6.5637 15 1 3.9602 1.0500 5.5772 16 6 4.1818 -2.8636 2.3816 17 8 3.8933 -3.5000 1.3875 18 8 4.6310 -3.4987 3.4805 19 6 4.7449 -4.9443 3.4062 20 6 6.1754 -5.3539 2.9758 21 6 6.2927 -6.8009 3.5257 22 6 5.5571 -6.7525 4.8808 23 6 4.5730 -5.5721 4.8048 24 1 -0.3633 0.5137 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6765 1.9563 0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6055 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1369 33 1 3.9994 0.1677 1.1421 34 1 3.8532 -1.3938 0.3003 35 1 3.7849 0.1427 3.6312 36 1 4.2256 -1.3650 4.4683 37 1 8.0766 1.2267 5.2185 38 1 4.0074 -5.3490 2.7131 39 1 6.2705 -5.3417 1.8901 40 1 6.9187 -4.7038 3.4372 41 1 7.3391 -7.0705 3.6691 42 1 5.8066 -7.5072 2.8527 43 1 6.2717 -6.5916 5.6880 44 1 5.0126 -7.6826 5.0443 45 1 4.8100 -4.8383 5.5751 46 1 3.5507 -5.9285 4.9309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830391095.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:26 Heat of formation + Delta-G solvation = -111.972939 kcal Electronic energy + Delta-G solvation = -23504.175236 eV Core-core repulsion = 20199.766948 eV Total energy + Delta-G solvation = -3304.408288 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.95015 -37.95872 -36.68823 -35.09494 -34.78870 -32.45956 -29.51771 -28.60565 -28.05069 -27.21687 -26.97128 -23.49396 -22.59578 -20.70121 -20.21461 -19.84313 -19.49742 -17.23923 -16.97708 -16.45022 -15.55192 -15.31384 -15.03702 -14.87488 -14.36478 -13.94494 -13.77420 -13.26560 -13.15815 -12.80672 -12.54758 -12.46467 -12.14933 -12.04463 -11.90038 -11.76251 -11.57973 -11.22407 -11.17336 -11.00457 -10.83469 -10.80483 -10.64698 -10.50156 -10.45850 -10.35843 -10.29433 -10.12454 -9.88484 -9.68909 -9.55277 -8.64596 -7.80961 -6.13865 -4.13632 2.90774 3.23883 3.30921 3.31883 3.57261 4.33766 4.53567 4.67131 4.75158 5.00666 5.02537 5.09335 5.11751 5.17992 5.45305 5.53212 5.57390 5.58056 5.68909 5.69534 5.70796 5.79230 5.84343 5.92564 5.94573 5.96212 5.99151 6.06050 6.10400 6.19870 6.21927 6.31538 6.34401 6.36779 6.43215 6.51386 6.58268 6.60579 6.79477 7.09974 7.34538 7.52466 8.14796 8.45490 8.89774 9.09037 9.45988 10.99260 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.010032 B = 0.006569 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.418696 B = 4261.518428 C = 6338.680620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.131 4.131 5 C 0.135 3.865 6 N -0.574 5.574 7 C 0.214 3.786 8 C -0.533 4.533 9 H 0.076 0.924 10 C 0.075 3.925 11 N -0.894 5.894 12 Si 0.873 3.127 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.265 1.265 16 C 0.651 3.349 17 O -0.602 6.602 18 O -0.345 6.345 19 C 0.101 3.899 20 C -0.141 4.141 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.124 4.124 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.265 0.735 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.688 -7.682 -2.922 12.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.170 4.170 5 C 0.013 3.987 6 N -0.311 5.311 7 C 0.093 3.907 8 C -0.571 4.571 9 H 0.094 0.906 10 C -0.128 4.128 11 N -0.533 5.533 12 Si 0.700 3.300 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.190 1.190 16 C 0.406 3.594 17 O -0.494 6.494 18 O -0.258 6.258 19 C 0.044 3.956 20 C -0.179 4.179 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.161 4.161 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.603 -7.813 -3.056 12.751 hybrid contribution -0.318 0.363 0.853 0.980 sum -9.921 -7.449 -2.203 12.601 Atomic orbital electron populations 1.21819 0.95532 1.01457 1.01384 1.21039 0.95409 0.96404 0.98364 1.21921 1.01786 0.95747 1.01387 1.22054 0.96426 1.00655 0.97827 1.21410 0.92833 0.97565 0.86884 1.46788 1.65535 1.02306 1.16447 1.19782 0.97071 0.91360 0.82504 1.21356 0.93413 1.34604 1.07753 0.90572 1.24845 0.94813 0.95297 0.97818 1.69900 1.11770 1.38374 1.33212 0.86902 0.81124 0.78509 0.83501 1.19902 1.21004 1.18953 1.18033 0.76463 0.83498 0.81409 1.90864 1.58125 1.66283 1.34155 1.86450 1.79100 1.22038 1.38256 1.23448 0.97894 0.76611 0.97636 1.22963 0.97009 0.96420 1.01475 1.22319 1.00611 0.96532 0.96473 1.22063 0.98038 0.97595 0.98024 1.22204 0.99698 0.97552 0.96672 0.92828 0.92974 0.92908 0.91139 0.92644 0.91922 0.93106 0.91885 0.91779 0.89477 0.90620 0.94852 0.94728 0.92512 0.89577 0.90946 0.89846 0.91260 0.91566 0.91314 0.91682 0.89976 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 2 C -0.09 -1.17 2.92 -90.62 -0.26 -1.44 16 3 C -0.15 -1.82 8.95 37.16 0.33 -1.49 16 4 C -0.13 -2.01 5.01 -26.73 -0.13 -2.15 16 5 C 0.14 2.48 5.16 -4.04 -0.02 2.46 16 6 N -0.57 -12.49 2.46 -180.86 -0.44 -12.94 16 7 C 0.21 5.05 4.24 -5.19 -0.02 5.02 16 8 C -0.53 -14.77 9.94 -34.44 -0.34 -15.11 16 9 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 10 C 0.08 2.11 5.47 -17.81 -0.10 2.01 16 11 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16 12 Si 0.87 20.65 27.47 -169.99 -4.67 15.98 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 16 C 0.65 14.51 8.39 54.05 0.45 14.96 16 17 O -0.60 -13.75 15.20 -19.28 -0.29 -14.04 16 18 O -0.35 -7.35 8.77 -40.31 -0.35 -7.71 16 19 C 0.10 1.71 3.18 -25.07 -0.08 1.63 16 20 C -0.14 -2.22 6.66 -24.55 -0.16 -2.39 16 21 C -0.12 -1.45 6.84 -24.88 -0.17 -1.62 16 22 C -0.12 -1.36 6.80 -25.62 -0.17 -1.53 16 23 C -0.12 -1.70 6.57 -25.62 -0.17 -1.87 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.58 6.50 -51.93 -0.34 1.24 16 34 H 0.08 1.41 7.42 -51.93 -0.39 1.02 16 35 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 36 H 0.03 0.83 6.80 -51.93 -0.35 0.48 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.09 1.47 7.20 -51.93 -0.37 1.10 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -31.07 366.10 -8.49 -39.56 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.51 Total: 2.35 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -0.51 Total: -2.75 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.33 Total: -38.92 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.65 Total: -21.74 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.07 -8.49 -39.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830391095.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.409 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds