Wall clock time and date at job start Tue Mar 31 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47337 * 2 1 4 4 C 1.53002 * 109.46852 * 65.00077 * 3 2 1 5 5 C 1.53007 * 109.46721 * 186.17673 * 4 3 2 6 6 C 1.53006 * 109.46854 * 184.99832 * 3 2 1 7 7 N 1.46499 * 109.47054 * 63.28786 * 6 3 2 8 8 C 1.46497 * 119.99656 * 263.97074 * 7 6 3 9 9 C 1.50703 * 109.47119 * 270.00039 * 8 7 6 10 10 H 1.07997 * 119.99515 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00053 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00035 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00127 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47483 * 59.99820 * 13 11 9 15 15 H 1.48498 * 109.47375 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47268 * 299.99740 * 13 11 9 17 17 C 1.34771 * 120.00023 * 83.97255 * 7 6 3 18 18 O 1.21514 * 119.99995 * 355.03138 * 17 7 6 19 19 O 1.34635 * 120.00251 * 175.03878 * 17 7 6 20 20 C 1.45201 * 117.00579 * 179.97438 * 19 17 7 21 21 C 1.53780 * 113.61736 * 149.99787 * 20 19 17 22 22 C 1.53784 * 87.08055 * 89.20025 * 21 20 19 23 23 C 1.53784 * 113.69036 * 247.53758 * 20 19 17 24 24 H 1.09003 * 109.46904 * 59.99509 * 1 2 3 25 25 H 1.08992 * 109.47507 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47176 * 300.00296 * 1 2 3 27 27 H 1.09003 * 109.47176 * 239.99704 * 2 1 3 28 28 H 1.09002 * 109.46530 * 120.00108 * 2 1 3 29 29 H 1.09000 * 109.47192 * 304.99930 * 3 2 1 30 30 H 1.08998 * 109.47053 * 306.17750 * 4 3 2 31 31 H 1.09001 * 109.47397 * 66.17891 * 4 3 2 32 32 H 1.08995 * 109.47108 * 303.81931 * 5 4 3 33 33 H 1.09001 * 109.47006 * 63.81583 * 5 4 3 34 34 H 1.08997 * 109.46825 * 183.81486 * 5 4 3 35 35 H 1.09003 * 109.47240 * 303.28581 * 6 3 2 36 36 H 1.08994 * 109.46517 * 183.28793 * 6 3 2 37 37 H 1.08998 * 109.47897 * 30.00291 * 8 7 6 38 38 H 1.09004 * 109.46776 * 150.00127 * 8 7 6 39 39 H 0.96995 * 120.00112 * 180.02562 * 12 11 9 40 40 H 1.09000 * 112.84804 * 18.79862 * 20 19 17 41 41 H 1.08996 * 113.61050 * 334.65528 * 21 20 19 42 42 H 1.08997 * 113.68970 * 203.75858 * 21 20 19 43 43 H 1.09002 * 113.61584 * 139.98335 * 22 21 20 44 44 H 1.09001 * 113.61723 * 270.88270 * 22 21 20 45 45 H 1.08997 * 113.61589 * 156.32036 * 23 20 19 46 46 H 1.08998 * 113.61426 * 25.41351 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0090 3.6088 1.2443 6 6 3.5649 1.4442 -0.1257 7 7 3.9495 0.8599 -1.4129 8 6 4.3154 -0.5563 -1.4944 9 6 5.7980 -0.7058 -1.2695 10 1 6.4068 0.1669 -1.0848 11 6 6.3773 -1.9566 -1.3006 12 7 5.6361 -3.0191 -1.5270 13 14 8.2151 -2.1419 -1.0225 14 1 8.5680 -1.6164 0.3209 15 1 8.5862 -3.5773 -1.1062 16 1 8.9524 -1.3792 -2.0617 17 6 3.9666 1.6253 -2.5221 18 8 3.5773 2.7753 -2.4728 19 8 4.4150 1.1157 -3.6848 20 6 4.4043 1.9971 -4.8387 21 6 5.5128 1.6896 -5.8592 22 6 4.5218 0.7208 -6.5257 23 6 3.3979 1.5813 -5.9245 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6055 1.9815 -0.8418 30 1 0.5592 2.0288 1.4505 31 1 2.1569 1.6554 2.1406 32 1 3.0739 3.7064 1.0336 33 1 1.4363 4.0946 0.4542 34 1 1.7829 4.0815 2.2001 35 1 3.9969 0.8558 0.6839 36 1 3.9331 2.4684 -0.0670 37 1 3.7739 -1.1160 -0.7318 38 1 4.0567 -0.9421 -2.4805 39 1 6.0435 -3.8991 -1.5485 40 1 4.3419 3.0506 -4.5660 41 1 6.3814 1.1950 -5.4244 42 1 5.7798 2.5407 -6.4856 43 1 4.5543 0.7440 -7.6150 44 1 4.5611 -0.2907 -6.1215 45 1 3.0855 2.4035 -6.5683 46 1 2.5592 0.9992 -5.5426 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830402028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:24 Heat of formation + Delta-G solvation = -81.831217 kcal Electronic energy + Delta-G solvation = -23975.029560 eV Core-core repulsion = 20671.928315 eV Total energy + Delta-G solvation = -3303.101245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.01156 -38.38941 -36.92677 -34.68832 -34.52814 -32.41558 -31.50797 -28.38202 -26.88363 -25.47847 -25.08007 -23.93145 -23.07526 -22.24747 -20.50606 -19.48677 -18.72138 -17.16116 -16.55830 -16.21724 -15.35684 -15.17696 -14.81938 -14.48340 -14.38737 -14.16775 -13.88708 -13.47807 -13.10950 -12.61015 -12.49510 -12.29357 -12.17964 -12.12576 -11.69654 -11.52243 -11.44702 -11.09896 -11.00414 -10.90274 -10.74797 -10.68264 -10.65475 -10.38223 -10.18526 -10.08678 -10.02472 -9.88063 -9.70715 -9.68289 -9.57664 -8.47594 -7.73270 -6.09809 -4.15144 2.95514 3.28741 3.33109 3.36338 3.62987 4.36856 4.60069 4.84256 4.88113 5.08190 5.08836 5.16432 5.23878 5.26282 5.31381 5.50625 5.60102 5.70950 5.72387 5.75976 5.87098 5.93145 5.95240 6.02466 6.07656 6.10284 6.16881 6.23139 6.23810 6.29973 6.34373 6.40734 6.45452 6.50535 6.59992 6.66039 6.82123 6.85774 7.16733 7.30730 7.59057 7.83812 8.15758 8.34248 8.86532 9.18511 9.50924 10.97560 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.009537 B = 0.007461 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.167039 B = 3751.873889 C = 5601.629994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.104 4.104 4 C -0.116 4.116 5 C -0.153 4.153 6 C 0.142 3.858 7 N -0.576 5.576 8 C 0.242 3.758 9 C -0.531 4.531 10 H 0.058 0.942 11 C 0.065 3.935 12 N -0.893 5.893 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.648 3.352 18 O -0.604 6.604 19 O -0.328 6.328 20 C 0.077 3.923 21 C -0.141 4.141 22 C -0.135 4.135 23 C -0.154 4.154 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.264 0.736 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.582 7.691 -1.745 10.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.123 4.123 4 C -0.154 4.154 5 C -0.210 4.210 6 C 0.020 3.980 7 N -0.312 5.312 8 C 0.123 3.877 9 C -0.570 4.570 10 H 0.076 0.924 11 C -0.138 4.138 12 N -0.532 5.532 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.402 3.598 18 O -0.497 6.497 19 O -0.241 6.241 20 C 0.020 3.980 21 C -0.178 4.178 22 C -0.172 4.172 23 C -0.191 4.191 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.663 7.796 -1.807 10.413 hybrid contribution 1.071 -0.222 0.102 1.098 sum -5.592 7.574 -1.705 9.568 Atomic orbital electron populations 1.21805 0.96652 1.01023 1.01158 1.21647 0.95018 0.96392 1.02977 1.21624 0.96411 0.96272 0.98035 1.21547 1.00980 0.95481 0.97360 1.21818 1.02128 0.96243 1.00804 1.21407 0.93549 0.98934 0.84142 1.47092 1.67192 1.12608 1.04347 1.19476 0.95694 0.73832 0.98698 1.21439 0.93176 0.92944 1.49421 0.92405 1.24897 0.98240 0.95648 0.94992 1.69913 1.35673 0.98481 1.49116 0.86597 0.85285 0.76966 0.78824 1.20220 1.21185 1.20202 1.18106 0.77053 0.83148 0.81467 1.90853 1.55102 1.18039 1.85698 1.86449 1.78111 1.42789 1.16713 1.23378 0.97297 0.94282 0.83009 1.23151 0.98031 1.00077 0.96560 1.22845 0.95663 0.99255 0.99425 1.23341 0.97889 1.00373 0.97546 0.93278 0.93148 0.92991 0.90893 0.91984 0.90861 0.91902 0.92029 0.92293 0.92884 0.93390 0.89829 0.91042 0.94044 0.94226 0.92622 0.88991 0.89988 0.88948 0.91710 0.89277 0.89222 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.68 37.16 0.36 -1.63 16 2 C -0.12 -1.95 4.70 -26.73 -0.13 -2.07 16 3 C -0.10 -1.65 2.02 -90.62 -0.18 -1.84 16 4 C -0.12 -1.51 5.28 -26.73 -0.14 -1.65 16 5 C -0.15 -1.93 9.77 37.16 0.36 -1.57 16 6 C 0.14 2.64 4.61 -4.04 -0.02 2.62 16 7 N -0.58 -12.59 2.14 -180.86 -0.39 -12.98 16 8 C 0.24 5.98 4.12 -5.19 -0.02 5.96 16 9 C -0.53 -14.38 9.39 -34.44 -0.32 -14.70 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -25.25 13.29 55.43 0.74 -24.52 16 13 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.65 14.55 8.33 54.05 0.45 15.00 16 18 O -0.60 -13.82 15.12 -19.28 -0.29 -14.11 16 19 O -0.33 -7.13 9.06 -40.31 -0.37 -7.50 16 20 C 0.08 1.34 4.31 -25.92 -0.11 1.23 16 21 C -0.14 -2.03 7.92 -25.92 -0.21 -2.24 16 22 C -0.13 -1.86 8.03 -25.91 -0.21 -2.07 16 23 C -0.15 -2.20 7.93 -25.91 -0.21 -2.40 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16 27 H 0.07 1.35 5.95 -51.93 -0.31 1.04 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.30 7.97 -51.93 -0.41 0.89 16 30 H 0.06 0.75 6.30 -51.93 -0.33 0.42 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.80 6.37 -51.93 -0.33 0.47 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 1.53 8.03 -51.93 -0.42 1.12 16 36 H 0.07 1.33 5.93 -51.93 -0.31 1.02 16 37 H 0.04 1.04 6.62 -51.93 -0.34 0.69 16 38 H 0.04 1.06 7.46 -51.93 -0.39 0.68 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.09 1.61 7.07 -51.93 -0.37 1.24 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -29.52 363.96 -8.47 -37.98 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.16 Total: 3.19 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -0.47 Total: -3.70 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.35 Total: -37.50 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.66 Total: -21.61 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.52 -8.47 -37.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830402028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.848 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds