Wall clock time and date at job start Tue Mar 31 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 112.92899 * 2 1 4 4 C 1.53846 * 113.64237 * 131.34028 * 2 1 3 5 5 H 1.09000 * 113.67991 * 25.28444 * 4 2 1 6 6 N 1.46905 * 113.67648 * 254.27465 * 4 2 1 7 7 C 1.46901 * 110.99870 * 155.00277 * 6 4 2 8 8 C 1.53004 * 109.46916 * 180.02562 * 7 6 4 9 9 O 1.42897 * 109.46931 * 64.99951 * 8 7 6 10 10 C 1.42908 * 113.99340 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.46672 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00017 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99999 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99705 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00271 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47141 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47568 * 120.00027 * 15 13 11 18 18 H 1.48507 * 109.47011 * 240.00018 * 15 13 11 19 19 C 1.53550 * 86.69002 * 139.82489 * 4 2 1 20 20 H 1.09007 * 112.54478 * 87.89082 * 19 4 2 21 21 C 1.51856 * 113.99672 * 216.33101 * 19 4 2 22 22 C 1.52790 * 110.84626 * 63.85366 * 21 19 4 23 23 C 1.53168 * 108.70703 * 54.15880 * 22 21 19 24 24 O 1.42427 * 108.91084 * 294.53154 * 23 22 21 25 25 C 1.41867 * 116.24436 * 58.19990 * 24 23 22 26 26 H 1.08997 * 112.41893 * 93.45206 * 25 24 23 27 27 H 1.09007 * 109.47040 * 288.66058 * 1 2 3 28 28 H 1.08995 * 109.47424 * 48.65909 * 1 2 3 29 29 H 1.08997 * 109.47193 * 168.66476 * 1 2 3 30 30 H 1.08999 * 109.46972 * 191.34008 * 3 2 1 31 31 H 1.09006 * 109.47203 * 311.33916 * 3 2 1 32 32 H 1.09002 * 109.47234 * 71.34048 * 3 2 1 33 33 H 1.00901 * 110.99869 * 31.04988 * 6 4 2 34 34 H 1.09004 * 109.47031 * 299.99620 * 7 6 4 35 35 H 1.08995 * 109.47111 * 59.99900 * 7 6 4 36 36 H 1.08996 * 109.46698 * 184.99715 * 8 7 6 37 37 H 1.09000 * 109.46869 * 304.99619 * 8 7 6 38 38 H 1.08993 * 109.47338 * 299.99632 * 10 9 8 39 39 H 1.08996 * 109.47019 * 60.00173 * 10 9 8 40 40 H 0.97000 * 119.99603 * 180.02562 * 14 13 11 41 41 H 1.08996 * 109.20213 * 303.50076 * 21 19 4 42 42 H 1.08999 * 109.20192 * 184.20416 * 21 19 4 43 43 H 1.09002 * 109.59314 * 294.39642 * 22 21 19 44 44 H 1.08997 * 109.59837 * 173.93215 * 22 21 19 45 45 H 1.09001 * 109.56848 * 174.70332 * 23 22 21 46 46 H 1.08997 * 109.66184 * 54.41517 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1261 1.4091 0.0000 4 6 2.1470 -0.9309 1.0581 5 1 1.4957 -1.7550 1.3494 6 7 2.7176 -0.2190 2.2095 7 6 2.7436 -1.0791 3.4001 8 6 3.3424 -0.3044 4.5758 9 8 2.4828 0.7854 4.9154 10 6 2.9526 1.5773 6.0083 11 6 1.9744 2.6917 6.2779 12 1 1.0832 2.7855 5.6754 13 6 2.2175 3.5915 7.2939 14 7 3.3032 3.4776 8.0274 15 14 1.0048 4.9724 7.6286 16 1 -0.1260 4.8812 6.6704 17 1 0.4894 4.8531 9.0162 18 1 1.6874 6.2811 7.4649 19 6 3.1844 -1.3095 -0.0087 20 1 4.0450 -0.6405 -0.0108 21 6 3.6085 -2.7670 0.0321 22 6 2.4283 -3.6857 -0.2805 23 6 1.8126 -3.2573 -1.6159 24 8 1.2546 -1.9550 -1.4703 25 6 2.1478 -0.9321 -1.0597 26 1 2.5783 -0.3928 -1.9034 27 1 -0.3633 0.3288 0.9737 28 1 -0.3634 0.6788 -0.7715 29 1 -0.3633 -1.0076 -0.2020 30 1 3.1956 1.3512 -0.2021 31 1 1.6425 2.0082 -0.7716 32 1 1.9648 1.8719 0.9737 33 1 2.2137 0.6360 2.3919 34 1 1.7278 -1.3871 3.6481 35 1 3.3516 -1.9608 3.1981 36 1 3.4439 -0.9683 5.4343 37 1 4.3232 0.0800 4.2958 38 1 3.0456 0.9523 6.8964 39 1 3.9253 2.0008 5.7584 40 1 3.4740 4.1104 8.7424 41 1 3.9919 -3.0012 1.0251 42 1 4.3959 -2.9320 -0.7034 43 1 1.6818 -3.6034 0.5095 44 1 2.7761 -4.7162 -0.3520 45 1 1.0292 -3.9604 -1.8990 46 1 2.5833 -3.2401 -2.3864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831327706.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:35 Heat of formation + Delta-G solvation = -84.863998 kcal Electronic energy + Delta-G solvation = -23435.413481 eV Core-core repulsion = 20132.180725 eV Total energy + Delta-G solvation = -3303.232756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27808 -37.33788 -36.57986 -34.16705 -33.66805 -32.57165 -30.33872 -28.66827 -27.43277 -26.73919 -25.82292 -23.91226 -22.90661 -22.34553 -21.29697 -19.65099 -18.26821 -16.84182 -16.40969 -16.00071 -15.81580 -15.65420 -15.09849 -14.88196 -14.62209 -14.38556 -14.16348 -13.70399 -13.28250 -13.15572 -12.95209 -12.79328 -12.46901 -12.12566 -11.99348 -11.75465 -11.57875 -11.37777 -11.27531 -11.21645 -11.11426 -10.83723 -10.77293 -10.64243 -10.45736 -10.33029 -10.01725 -9.82363 -9.28913 -9.09133 -8.82581 -8.17170 -8.14334 -6.11013 -4.12701 3.28939 3.35461 3.41680 3.48093 4.27585 4.34472 4.38449 4.46155 4.54481 4.71940 4.73081 4.87007 4.97448 5.05894 5.20712 5.25595 5.29701 5.38466 5.43856 5.53472 5.55912 5.58839 5.70152 5.75119 5.79057 5.80344 5.89842 5.94902 5.96503 5.99348 6.09343 6.13763 6.21491 6.22343 6.36188 6.43311 6.50292 7.11673 7.22871 7.33583 7.44209 7.69491 7.79328 8.15451 8.57964 9.00865 9.52277 11.00559 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.003433 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.092753 B = 8155.170988 C = 8783.100163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C -0.124 4.124 4 C 0.076 3.924 5 H 0.073 0.927 6 N -0.672 5.672 7 C 0.066 3.934 8 C 0.062 3.938 9 O -0.399 6.399 10 C 0.197 3.803 11 C -0.513 4.513 12 H 0.066 0.934 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.907 3.093 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.122 4.122 20 H 0.105 0.895 21 C -0.110 4.110 22 C -0.158 4.158 23 C 0.066 3.934 24 O -0.365 6.365 25 C 0.081 3.919 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.357 0.643 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.046 0.954 38 H 0.003 0.997 39 H 0.006 0.994 40 H 0.263 0.737 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 -13.033 -19.282 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 C -0.181 4.181 4 C -0.034 4.034 5 H 0.091 0.909 6 N -0.306 5.306 7 C -0.063 4.063 8 C -0.016 4.016 9 O -0.319 6.319 10 C 0.123 3.877 11 C -0.552 4.552 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.734 3.266 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.141 4.141 20 H 0.123 0.877 21 C -0.147 4.147 22 C -0.196 4.196 23 C -0.011 4.011 24 O -0.283 6.283 25 C 0.022 3.978 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.179 0.821 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.021 0.979 39 H 0.024 0.976 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.110 0.890 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.389 -12.987 -19.401 23.350 hybrid contribution -0.783 0.500 0.863 1.268 sum -1.172 -12.487 -18.538 22.382 Atomic orbital electron populations 1.21604 0.93590 1.02440 1.01415 1.22334 0.96193 0.95054 0.95110 1.21492 1.00659 0.93351 1.02613 1.23117 0.94308 0.96027 0.89995 0.90882 1.60636 1.57937 1.08042 1.03977 1.21989 0.99350 0.95382 0.89613 1.22292 0.94304 0.90095 0.94879 1.87787 1.47893 1.41650 1.54581 1.20174 0.95237 0.89246 0.83055 1.21089 1.07413 1.10625 1.16041 0.91579 1.24952 0.95874 0.98085 0.95634 1.69978 1.25785 1.37317 1.20672 0.86295 0.80875 0.81291 0.78113 1.19496 1.20871 1.20823 1.22651 0.98326 0.97044 0.96118 0.87726 1.21088 0.97370 0.94014 1.02234 1.22158 0.98938 0.99649 0.98814 1.22465 0.98412 0.84293 0.95922 1.87427 1.36142 1.16842 1.87929 1.22627 0.91071 0.89155 0.94929 0.91126 0.92719 0.92717 0.91571 0.91934 0.92560 0.91032 0.82084 0.94921 0.90978 0.94317 0.93613 0.97878 0.97636 0.92723 0.91218 0.92098 0.90998 0.90970 0.89035 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.00 37.16 0.33 -1.24 16 2 C -0.09 -1.00 1.27 -153.52 -0.20 -1.20 16 3 C -0.12 -1.43 8.45 37.16 0.31 -1.12 16 4 C 0.08 0.94 2.99 -66.98 -0.20 0.74 16 5 H 0.07 0.96 6.52 -51.93 -0.34 0.62 16 6 N -0.67 -9.89 6.07 -105.95 -0.64 -10.53 16 7 C 0.07 1.01 5.95 -3.82 -0.02 0.99 16 8 C 0.06 1.17 6.28 37.16 0.23 1.40 16 9 O -0.40 -9.53 9.85 -35.23 -0.35 -9.88 16 10 C 0.20 5.43 5.69 36.01 0.20 5.64 16 11 C -0.51 -15.13 9.43 -34.44 -0.32 -15.45 16 12 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 15 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 C -0.12 -1.32 3.45 -91.25 -0.31 -1.63 16 20 H 0.10 1.20 7.53 -51.93 -0.39 0.80 16 21 C -0.11 -1.03 5.70 -27.42 -0.16 -1.18 16 22 C -0.16 -1.34 5.91 -26.75 -0.16 -1.50 16 23 C 0.07 0.56 6.86 37.24 0.26 0.82 16 24 O -0.36 -4.06 8.82 -35.22 -0.31 -4.37 16 25 C 0.08 0.88 4.17 -26.50 -0.11 0.77 16 26 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.80 6.90 -51.93 -0.36 0.44 16 30 H 0.06 0.70 7.26 -51.93 -0.38 0.32 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.93 6.72 -51.93 -0.35 0.58 16 33 H 0.36 5.91 6.49 -39.29 -0.26 5.65 16 34 H 0.03 0.52 8.13 -51.93 -0.42 0.09 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.69 6.97 -51.93 -0.36 0.33 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -30.48 356.08 -8.77 -39.25 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.31 Total: 1.03 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -0.24 Total: -11.45 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.09 Total: -36.79 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.66 Total: -14.25 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.48 -8.77 -39.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831327706.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.617 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds