Wall clock time and date at job start Tue Mar 31 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 112.93998 * 2 1 4 4 C 1.53910 * 113.64897 * 131.37107 * 2 1 3 5 5 H 1.08994 * 113.71236 * 333.82642 * 4 2 1 6 6 N 1.46900 * 113.70883 * 202.71138 * 4 2 1 7 7 C 1.46902 * 110.99994 * 176.78112 * 6 4 2 8 8 C 1.52997 * 109.47532 * 186.25063 * 7 6 4 9 9 O 1.42905 * 109.46882 * 65.00416 * 8 7 6 10 10 C 1.42891 * 114.00160 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47079 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00286 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99606 * 180.27692 * 11 10 9 14 14 N 1.31512 * 120.00651 * 359.72072 * 13 11 10 15 15 Si 1.86809 * 119.99855 * 179.72512 * 13 11 10 16 16 H 1.48503 * 109.46922 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47124 * 119.99465 * 15 13 11 18 18 H 1.48500 * 109.47125 * 239.99887 * 15 13 11 19 19 C 1.53357 * 86.58393 * 88.27359 * 4 2 1 20 20 H 1.09002 * 111.94053 * 274.20975 * 19 4 2 21 21 C 1.51026 * 115.03263 * 145.41704 * 19 4 2 22 22 C 1.51908 * 113.41272 * 289.52335 * 21 19 4 23 23 C 1.52661 * 110.75011 * 315.44348 * 22 21 19 24 24 O 1.42853 * 108.92620 * 61.29752 * 23 22 21 25 25 C 1.42848 * 113.84179 * 295.61742 * 24 23 22 26 26 H 1.08992 * 113.10208 * 276.31089 * 25 24 23 27 27 H 1.09000 * 109.46953 * 288.62688 * 1 2 3 28 28 H 1.09006 * 109.47072 * 48.62808 * 1 2 3 29 29 H 1.08997 * 109.46828 * 168.62939 * 1 2 3 30 30 H 1.08998 * 109.47157 * 191.36984 * 3 2 1 31 31 H 1.09000 * 109.47382 * 311.37285 * 3 2 1 32 32 H 1.08999 * 109.46940 * 71.37247 * 3 2 1 33 33 H 1.00901 * 111.00108 * 300.73768 * 6 4 2 34 34 H 1.09005 * 109.46845 * 66.25661 * 7 6 4 35 35 H 1.08991 * 109.47336 * 306.25737 * 7 6 4 36 36 H 1.08996 * 109.47405 * 305.00901 * 8 7 6 37 37 H 1.08991 * 109.47560 * 185.00145 * 8 7 6 38 38 H 1.09002 * 109.47376 * 60.00148 * 10 9 8 39 39 H 1.08998 * 109.47352 * 299.99672 * 10 9 8 40 40 H 0.96995 * 120.00318 * 180.02562 * 14 13 11 41 41 H 1.09005 * 108.69116 * 50.53442 * 21 19 4 42 42 H 1.08996 * 108.69678 * 168.50131 * 21 19 4 43 43 H 1.08996 * 109.22687 * 75.77721 * 22 21 19 44 44 H 1.09008 * 109.21669 * 195.12093 * 22 21 19 45 45 H 1.08998 * 109.56490 * 181.13061 * 23 22 21 46 46 H 1.09005 * 109.56432 * 301.46671 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1263 1.4090 0.0000 4 6 2.1474 -0.9318 1.0580 5 1 1.5028 -1.1043 1.9198 6 7 3.5209 -0.5708 1.4338 7 6 4.0235 -1.4492 2.4986 8 6 5.3900 -0.9483 2.9704 9 8 5.2424 0.3364 3.5785 10 6 6.4667 0.8976 4.0560 11 6 6.1943 2.2445 4.6748 12 1 5.1871 2.6332 4.7005 13 6 7.2320 2.9831 5.2026 14 7 8.4587 2.5101 5.1709 15 14 6.8956 4.6560 5.9628 16 1 5.4441 4.9572 5.8738 17 1 7.3128 4.6450 7.3879 18 1 7.6622 5.6958 5.2305 19 6 2.0685 -2.0370 -0.0023 20 1 1.0947 -2.5267 -0.0084 21 6 3.1960 -3.0410 0.0361 22 6 4.5286 -2.4698 -0.4174 23 6 4.3556 -1.6315 -1.6814 24 8 3.4797 -0.5395 -1.3969 25 6 2.1500 -0.9384 -1.0604 26 1 1.5237 -1.1190 -1.9339 27 1 -0.3633 0.3282 0.9738 28 1 -0.3633 0.6793 -0.7712 29 1 -0.3633 -1.0075 -0.2026 30 1 3.1958 1.3509 -0.2026 31 1 1.6425 2.0084 -0.7712 32 1 1.9657 1.8715 0.9738 33 1 4.1320 -0.5892 0.6312 34 1 4.1214 -2.4650 2.1156 35 1 3.3252 -1.4421 3.3353 36 1 6.0633 -0.8709 2.1167 37 1 5.8028 -1.6486 3.6964 38 1 7.1620 1.0134 3.2245 39 1 6.9023 0.2357 4.8044 40 1 9.1886 3.0296 5.5425 41 1 3.3024 -3.4080 1.0570 42 1 2.9381 -3.8809 -0.6090 43 1 4.9391 -1.8440 0.3750 44 1 5.2190 -3.2883 -0.6213 45 1 5.3248 -1.2483 -2.0006 46 1 3.9264 -2.2472 -2.4719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831328006.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:41 Heat of formation + Delta-G solvation = -62.836115 kcal Electronic energy + Delta-G solvation = -24107.135834 eV Core-core repulsion = 20804.858279 eV Total energy + Delta-G solvation = -3302.277556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65980 -36.91102 -36.55480 -34.86853 -33.11161 -32.43668 -30.38711 -28.62157 -27.27303 -26.74971 -25.69649 -24.30123 -22.68434 -22.21206 -21.35466 -19.62034 -18.73437 -16.70158 -16.31125 -16.11959 -16.03031 -15.37590 -15.06777 -14.88800 -14.55664 -14.14061 -14.01321 -13.67363 -13.27297 -13.07418 -12.92147 -12.60026 -12.38782 -12.18108 -12.01670 -11.79048 -11.63031 -11.39485 -11.17930 -11.13832 -10.94658 -10.74798 -10.72637 -10.56270 -10.52405 -10.27274 -9.90303 -9.83640 -9.29524 -8.98673 -8.72144 -8.05376 -7.86140 -6.03013 -4.03365 3.34859 3.41021 3.48559 3.51627 4.16462 4.31674 4.42664 4.44856 4.57019 4.69762 4.71146 4.92648 5.00757 5.07414 5.20070 5.23706 5.30629 5.33672 5.46080 5.52226 5.56707 5.61778 5.64411 5.71077 5.74147 5.79217 5.88905 5.93667 5.95794 6.01474 6.06660 6.12571 6.17629 6.30868 6.40582 6.47520 6.85260 7.11271 7.19547 7.39148 7.52836 7.80700 7.89890 8.26024 8.71666 9.12203 9.61329 11.08831 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.004109 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.121018 B = 6812.573044 C = 7365.428647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 C -0.119 4.119 4 C 0.090 3.910 5 H 0.086 0.914 6 N -0.654 5.654 7 C 0.056 3.944 8 C 0.067 3.933 9 O -0.378 6.378 10 C 0.193 3.807 11 C -0.507 4.507 12 H 0.067 0.933 13 C 0.055 3.945 14 N -0.901 5.901 15 Si 0.906 3.094 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.176 4.176 20 H 0.094 0.906 21 C -0.112 4.112 22 C -0.175 4.175 23 C 0.059 3.941 24 O -0.354 6.354 25 C 0.074 3.926 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.353 0.647 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.038 0.962 38 H 0.003 0.997 39 H 0.001 0.999 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.257 -12.336 -14.211 23.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.076 4.076 3 C -0.176 4.176 4 C -0.022 4.022 5 H 0.104 0.896 6 N -0.290 5.290 7 C -0.073 4.073 8 C -0.012 4.012 9 O -0.297 6.297 10 C 0.119 3.881 11 C -0.546 4.546 12 H 0.085 0.915 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.733 3.267 16 H -0.194 1.194 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.197 4.197 20 H 0.112 0.888 21 C -0.149 4.149 22 C -0.213 4.213 23 C -0.018 4.018 24 O -0.272 6.272 25 C 0.016 3.984 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.180 0.820 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.021 0.979 39 H 0.019 0.981 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.116 0.884 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.344 -11.488 -13.711 22.316 hybrid contribution 0.406 -0.578 -0.123 0.717 sum -12.938 -12.065 -13.834 22.458 Atomic orbital electron populations 1.21553 0.92688 1.01508 1.02541 1.22249 0.94813 0.96383 0.94176 1.21376 1.02041 0.93047 1.01115 1.22680 0.92172 0.92141 0.95182 0.89563 1.60302 1.01690 1.53377 1.13654 1.22173 0.97036 0.93236 0.94846 1.22220 0.94884 0.88225 0.95823 1.87965 1.34265 1.30212 1.77253 1.20178 0.81658 0.93382 0.92918 1.21112 0.94863 1.01424 1.37162 0.91461 1.24943 0.94749 0.98671 0.96226 1.69975 0.99365 1.38334 1.46426 0.86308 0.78576 0.83169 0.78610 1.19446 1.20961 1.20907 1.23181 0.99886 0.96362 1.00260 0.88774 1.20753 0.93982 0.97950 1.02202 1.22220 0.98021 1.01097 0.99915 1.22455 0.94585 0.89143 0.95586 1.87989 1.19858 1.30655 1.88739 1.23196 0.84544 0.95521 0.95130 0.91154 0.91570 0.92102 0.92762 0.90734 0.94037 0.92066 0.81962 0.94195 0.90582 0.95089 0.94407 0.97945 0.98116 0.92858 0.90905 0.92264 0.89786 0.90608 0.88408 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 9.11 37.16 0.34 -0.82 16 2 C -0.08 -0.89 1.36 -153.22 -0.21 -1.10 16 3 C -0.12 -1.67 8.47 37.16 0.31 -1.35 16 4 C 0.09 1.14 3.53 -67.05 -0.24 0.90 16 5 H 0.09 1.09 8.02 -51.93 -0.42 0.67 16 6 N -0.65 -10.13 5.16 -106.03 -0.55 -10.68 16 7 C 0.06 0.86 4.81 -3.82 -0.02 0.84 16 8 C 0.07 1.28 6.21 37.16 0.23 1.51 16 9 O -0.38 -9.49 10.27 -35.23 -0.36 -9.85 16 10 C 0.19 5.49 5.69 36.01 0.20 5.69 16 11 C -0.51 -15.43 9.43 -34.44 -0.32 -15.75 16 12 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 13 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 15 Si 0.91 22.44 29.54 -169.99 -5.02 17.41 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 C -0.18 -1.79 3.54 -91.57 -0.32 -2.12 16 20 H 0.09 0.83 7.35 -51.93 -0.38 0.45 16 21 C -0.11 -1.07 4.92 -28.28 -0.14 -1.21 16 22 C -0.17 -1.77 5.17 -27.46 -0.14 -1.91 16 23 C 0.06 0.60 6.70 36.98 0.25 0.85 16 24 O -0.35 -4.48 7.41 -35.23 -0.26 -4.74 16 25 C 0.07 0.82 4.24 -26.03 -0.11 0.71 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.42 7.12 -51.93 -0.37 0.05 16 30 H 0.07 1.20 6.32 -51.93 -0.33 0.88 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.35 5.43 3.48 -39.29 -0.14 5.30 16 34 H 0.04 0.51 4.55 -51.93 -0.24 0.27 16 35 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 36 H 0.03 0.58 7.80 -51.93 -0.41 0.18 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.07 0.72 5.92 -51.93 -0.31 0.41 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 1.04 3.81 -51.93 -0.20 0.84 16 44 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -32.39 341.86 -8.38 -40.77 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.81 Total: 1.03 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -0.26 Total: -12.24 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.19 Total: -37.53 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.62 Total: -14.59 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.39 -8.38 -40.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831328006.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.063 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds