Wall clock time and date at job start Tue Mar 31 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 113.29527 * 2 1 4 4 C 1.55630 * 114.06029 * 132.72067 * 2 1 3 5 5 H 1.09002 * 114.06608 * 323.64953 * 4 2 1 6 6 N 1.46899 * 114.05809 * 191.47462 * 4 2 1 7 7 C 1.46908 * 110.99757 * 155.00052 * 6 4 2 8 8 C 1.52999 * 109.46776 * 179.97438 * 7 6 4 9 9 O 1.42898 * 109.47174 * 65.00267 * 8 7 6 10 10 C 1.42906 * 113.99824 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.46706 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99398 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99350 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47326 * 270.00340 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00090 * 15 13 11 18 18 H 1.48498 * 109.47210 * 149.99801 * 15 13 11 19 19 C 1.50570 * 84.27632 * 77.64755 * 4 2 1 20 20 H 1.09004 * 113.16558 * 281.92358 * 19 4 2 21 21 C 1.52051 * 123.95336 * 139.56358 * 19 4 2 22 22 C 1.54389 * 105.10114 * 203.09898 * 21 19 4 23 23 C 1.52402 * 112.07013 * 53.83263 * 22 21 19 24 24 O 1.44158 * 112.90787 * 309.96562 * 23 22 21 25 25 C 1.40854 * 109.95050 * 56.65024 * 24 23 22 26 26 H 1.09000 * 111.48271 * 53.36526 * 25 24 23 27 27 H 1.09003 * 109.46696 * 287.28078 * 1 2 3 28 28 H 1.08997 * 109.46465 * 47.27618 * 1 2 3 29 29 H 1.08993 * 109.47212 * 167.27871 * 1 2 3 30 30 H 1.09004 * 109.46974 * 192.72431 * 3 2 1 31 31 H 1.08997 * 109.46969 * 312.71858 * 3 2 1 32 32 H 1.08999 * 109.47759 * 72.72208 * 3 2 1 33 33 H 1.00895 * 111.00394 * 278.95000 * 6 4 2 34 34 H 1.09003 * 109.47076 * 60.00230 * 7 6 4 35 35 H 1.08993 * 109.47323 * 299.99685 * 7 6 4 36 36 H 1.09002 * 109.47561 * 304.99666 * 8 7 6 37 37 H 1.09008 * 109.47150 * 184.99785 * 8 7 6 38 38 H 1.09000 * 109.47141 * 60.00107 * 10 9 8 39 39 H 1.08993 * 109.47732 * 299.99746 * 10 9 8 40 40 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 41 41 H 1.09001 * 110.30720 * 84.20489 * 21 19 4 42 42 H 1.09002 * 110.30577 * 321.99523 * 21 19 4 43 43 H 1.08998 * 108.96700 * 293.15857 * 22 21 19 44 44 H 1.08999 * 108.95969 * 174.49173 * 22 21 19 45 45 H 1.09002 * 108.80019 * 189.08615 * 23 22 21 46 46 H 1.08997 * 108.71028 * 70.79025 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1351 1.4052 0.0000 4 6 2.1645 -0.9641 1.0440 5 1 1.6138 -1.0278 1.9825 6 7 3.6091 -0.7754 1.2331 7 6 4.0307 -1.2370 2.5625 8 6 5.5376 -1.0254 2.7215 9 8 5.8273 0.3737 2.6976 10 6 7.2154 0.6824 2.8401 11 6 7.4041 2.1771 2.8004 12 1 6.5497 2.8263 2.6791 13 6 8.6679 2.7156 2.9192 14 7 8.8325 4.0199 2.8851 15 14 10.1459 1.5927 3.1284 16 1 10.3832 1.3509 4.5741 17 1 9.8854 0.2995 2.4464 18 1 11.3441 2.2349 2.5307 19 6 1.8107 -2.0349 0.0464 20 1 0.7553 -2.3070 0.0656 21 6 2.7115 -3.2125 -0.2909 22 6 2.2649 -3.6711 -1.6958 23 6 2.2773 -2.5269 -2.7025 24 8 1.5851 -1.3547 -2.2281 25 6 2.1417 -0.9294 -1.0061 26 1 3.2203 -0.7929 -1.0848 27 1 -0.3633 0.3053 0.9813 28 1 -0.3632 0.6972 -0.7550 29 1 -0.3633 -1.0024 -0.2263 30 1 3.1995 1.3425 -0.2264 31 1 1.6384 2.0146 -0.7550 32 1 1.9985 1.8597 0.9812 33 1 4.1326 -1.2399 0.5063 34 1 3.7997 -2.2969 2.6693 35 1 3.5011 -0.6707 3.3285 36 1 6.0622 -1.5191 1.9035 37 1 5.8657 -1.4481 3.6712 38 1 7.7750 0.2241 2.0247 39 1 7.5779 0.2952 3.7922 40 1 9.7216 4.3989 2.9690 41 1 2.5703 -4.0160 0.4320 42 1 3.7548 -2.8975 -0.3095 43 1 1.2549 -4.0758 -1.6320 44 1 2.9377 -4.4553 -2.0429 45 1 1.8041 -2.8650 -3.6244 46 1 3.3123 -2.2609 -2.9168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831328007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:44 Heat of formation + Delta-G solvation = -46.039515 kcal Electronic energy + Delta-G solvation = -23564.561098 eV Core-core repulsion = 20263.011898 eV Total energy + Delta-G solvation = -3301.549200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.79925 -37.52477 -36.84577 -34.36330 -33.53364 -32.50697 -30.29517 -28.83638 -27.50807 -27.08886 -25.95282 -24.07235 -22.25015 -21.86817 -21.67662 -20.20815 -18.69061 -16.91142 -16.52055 -16.19596 -15.70581 -15.51129 -15.19401 -14.85316 -14.52267 -14.31336 -14.00628 -13.89125 -13.44799 -13.10494 -12.92442 -12.73310 -12.43717 -12.37912 -12.09325 -12.03599 -11.95975 -11.54292 -11.49198 -11.15356 -10.99430 -10.89437 -10.73618 -10.66926 -10.57149 -10.28351 -10.06090 -9.84262 -9.13735 -9.00126 -8.81151 -8.42883 -8.19694 -6.08055 -4.06374 3.25767 3.32766 3.33983 3.41358 3.92798 4.16980 4.37834 4.49522 4.55976 4.62251 4.71946 4.77889 4.93930 4.96745 5.18196 5.22884 5.23174 5.29987 5.37661 5.42292 5.49287 5.52703 5.60876 5.61969 5.68344 5.73166 5.76991 5.85392 5.88609 5.91330 6.01861 6.03118 6.12662 6.20568 6.25239 6.41850 6.62520 6.70703 7.02669 7.04583 7.13459 7.44718 7.63758 8.08041 8.71798 9.05481 9.51647 11.05150 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.021902 B = 0.003718 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.101852 B = 7529.674273 C = 7855.401218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.049 4.049 3 C -0.125 4.125 4 C 0.093 3.907 5 H 0.090 0.910 6 N -0.652 5.652 7 C 0.068 3.932 8 C 0.060 3.940 9 O -0.364 6.364 10 C 0.167 3.833 11 C -0.515 4.515 12 H 0.083 0.917 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.875 3.125 16 H -0.274 1.274 17 H -0.267 1.267 18 H -0.283 1.283 19 C -0.200 4.200 20 H 0.104 0.896 21 C -0.108 4.108 22 C -0.149 4.149 23 C 0.060 3.940 24 O -0.361 6.361 25 C 0.057 3.943 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.339 0.661 34 H 0.036 0.964 35 H 0.082 0.918 36 H 0.034 0.966 37 H 0.042 0.958 38 H 0.000 1.000 39 H -0.005 1.005 40 H 0.266 0.734 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.502 -16.746 -7.511 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.050 4.050 3 C -0.183 4.183 4 C -0.018 4.018 5 H 0.108 0.892 6 N -0.283 5.283 7 C -0.061 4.061 8 C -0.018 4.018 9 O -0.282 6.282 10 C 0.092 3.908 11 C -0.553 4.553 12 H 0.101 0.899 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.702 3.298 16 H -0.200 1.200 17 H -0.192 1.192 18 H -0.208 1.208 19 C -0.220 4.220 20 H 0.122 0.878 21 C -0.146 4.146 22 C -0.187 4.187 23 C -0.016 4.016 24 O -0.280 6.280 25 C -0.001 4.001 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.160 0.840 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.013 0.987 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.676 -15.712 -7.437 23.408 hybrid contribution 1.335 -1.929 0.080 2.348 sum -14.341 -17.642 -7.357 23.896 Atomic orbital electron populations 1.21594 0.92641 1.02146 1.01907 1.21840 0.95496 0.95354 0.92351 1.21562 1.01606 0.93483 1.01618 1.22179 0.89867 0.93246 0.96557 0.89222 1.60126 1.01829 1.62360 1.04033 1.22002 0.95616 0.97080 0.91425 1.22318 0.94169 0.86495 0.98814 1.88028 1.27125 1.19083 1.93994 1.20589 0.78723 0.97644 0.93840 1.20900 0.95117 0.89227 1.50023 0.89861 1.24766 0.98385 0.94991 0.94846 1.69882 1.22967 1.10288 1.50347 0.86865 0.82792 0.81315 0.78826 1.20010 1.19220 1.20828 1.24094 1.01334 0.95586 1.00963 0.87800 1.21500 0.98998 0.97930 0.96126 1.22094 1.02334 0.98496 0.95736 1.22509 0.97185 0.85451 0.96502 1.87917 1.57919 1.43127 1.39017 1.23595 0.97232 0.96602 0.82682 0.90037 0.92236 0.91967 0.92205 0.91001 0.93555 0.91971 0.83964 0.94583 0.89982 0.94804 0.93966 0.98200 0.98713 0.92437 0.91670 0.91716 0.91488 0.90936 0.89164 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.03 37.16 0.34 -0.95 16 2 C -0.05 -0.59 1.45 -157.70 -0.23 -0.82 16 3 C -0.13 -1.72 8.90 37.15 0.33 -1.39 16 4 C 0.09 1.08 3.89 -71.18 -0.28 0.80 16 5 H 0.09 1.00 7.87 -51.93 -0.41 0.59 16 6 N -0.65 -8.91 5.43 -110.44 -0.60 -9.51 16 7 C 0.07 0.93 5.91 -3.82 -0.02 0.90 16 8 C 0.06 1.02 6.22 37.16 0.23 1.25 16 9 O -0.36 -8.44 10.27 -35.23 -0.36 -8.80 16 10 C 0.17 4.28 4.76 36.01 0.17 4.46 16 11 C -0.51 -15.47 9.99 -34.44 -0.34 -15.81 16 12 H 0.08 2.75 8.06 -52.49 -0.42 2.33 16 13 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 14 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 15 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 19 C -0.20 -2.03 3.14 -93.71 -0.29 -2.33 16 20 H 0.10 1.05 6.22 -51.93 -0.32 0.72 16 21 C -0.11 -0.98 5.96 -26.49 -0.16 -1.13 16 22 C -0.15 -1.20 5.95 -26.31 -0.16 -1.36 16 23 C 0.06 0.56 6.67 36.85 0.25 0.81 16 24 O -0.36 -4.43 10.93 -34.62 -0.38 -4.81 16 25 C 0.06 0.68 3.02 -30.15 -0.09 0.59 16 26 H 0.08 1.07 6.15 -51.93 -0.32 0.75 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.58 6.18 -51.93 -0.32 0.26 16 30 H 0.07 1.13 7.63 -51.93 -0.40 0.73 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.34 4.46 5.42 -39.29 -0.21 4.25 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.04 0.67 8.14 -51.92 -0.42 0.24 16 38 H 0.00 0.01 7.20 -51.93 -0.37 -0.37 16 39 H 0.00 -0.12 7.57 -51.93 -0.39 -0.51 16 40 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.62 6.45 -51.93 -0.33 0.28 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -32.08 352.04 -8.45 -40.53 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.17 Total: 0.49 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -0.36 Total: -12.95 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.17 Total: -36.65 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.74 Total: -13.61 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.08 -8.45 -40.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831328007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.505 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds