Wall clock time and date at job start Tue Mar 31 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47327 * 2 1 4 4 C 1.53001 * 109.47327 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47327 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47327 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47327 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47349 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99679 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00178 * 179.97438 * 8 7 6 11 11 C 1.47022 * 125.65138 * 359.97438 * 10 8 7 12 12 C 1.54322 * 107.27482 * 178.98361 * 11 10 8 13 13 C 1.55157 * 102.93912 * 337.80443 * 12 11 10 14 14 O 1.42900 * 111.00520 * 277.38901 * 13 12 11 15 15 C 1.50702 * 111.00344 * 153.57728 * 13 12 11 16 16 H 1.08002 * 120.00299 * 241.45696 * 15 13 12 17 17 C 1.37884 * 119.99942 * 61.17254 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.47424 * 125.64952 * 180.02562 * 10 8 7 24 24 H 1.08995 * 109.47248 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46836 * 299.99953 * 1 2 3 26 26 H 1.08993 * 109.46745 * 59.99721 * 1 2 3 27 27 H 1.08996 * 109.47145 * 239.99652 * 2 1 3 28 28 H 1.09002 * 109.47202 * 119.99858 * 2 1 3 29 29 H 1.09009 * 109.47146 * 60.00002 * 3 2 1 30 30 H 1.09003 * 109.47348 * 299.99869 * 3 2 1 31 31 H 1.08996 * 109.47145 * 59.99652 * 4 3 2 32 32 H 1.09002 * 109.47202 * 299.99858 * 4 3 2 33 33 H 1.09009 * 109.47146 * 60.00002 * 5 4 3 34 34 H 1.09003 * 109.47348 * 299.99869 * 5 4 3 35 35 H 1.08999 * 109.46836 * 60.00047 * 6 5 4 36 36 H 1.09003 * 109.46799 * 300.00205 * 6 5 4 37 37 H 1.09005 * 109.47314 * 59.99520 * 7 6 5 38 38 H 1.09003 * 109.47348 * 299.99869 * 7 6 5 39 39 H 1.09003 * 109.88076 * 59.56192 * 11 10 8 40 40 H 1.09001 * 110.00358 * 298.47568 * 11 10 8 41 41 H 1.08995 * 110.71729 * 219.44160 * 12 11 10 42 42 H 1.08996 * 110.71909 * 96.16437 * 12 11 10 43 43 H 0.96704 * 113.99783 * 295.41666 * 14 13 12 44 44 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 45 45 H 1.09007 * 110.36818 * 85.24741 * 23 10 8 46 46 H 1.09006 * 110.37032 * 322.92419 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 6 5.6101 2.8849 0.0013 7 6 6.1202 4.3273 0.0013 8 6 7.6271 4.3273 0.0019 9 8 8.2335 3.2770 0.0019 10 7 8.3010 5.4945 0.0015 11 6 7.6949 6.8340 -0.0001 12 6 8.8483 7.8589 0.0262 13 6 10.0282 7.0393 0.6122 14 8 9.9634 6.9966 2.0391 15 6 11.3519 7.5924 0.1508 16 1 12.0193 6.9779 -0.4352 17 6 11.7085 8.8851 0.4719 18 7 10.8959 9.6334 1.1854 19 14 13.3459 9.5732 -0.1066 20 1 13.1718 10.2151 -1.4343 21 1 13.8324 10.5804 0.8702 22 1 14.3354 8.4712 -0.2155 23 6 9.7681 5.6396 0.0015 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6768 1.9563 -0.8900 31 1 3.9338 0.9284 -0.8890 32 1 3.9330 0.9288 0.8909 33 1 3.7164 3.3985 0.8913 34 1 3.7172 3.3990 -0.8887 35 1 5.9734 2.3714 -0.8889 36 1 5.9734 2.3706 0.8911 37 1 5.7568 4.8412 0.8913 38 1 5.7569 4.8412 -0.8887 39 1 7.0682 6.9583 0.8831 40 1 7.0970 6.9716 -0.9010 41 1 8.6026 8.6993 0.6752 42 1 9.0810 8.2034 -0.9814 43 1 10.0713 7.8587 2.4637 44 1 11.1469 10.5427 1.4116 45 1 10.1540 5.5923 -1.0169 46 1 10.2259 4.8658 0.6179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844013813.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:55 Heat of formation + Delta-G solvation = -129.136750 kcal Electronic energy + Delta-G solvation = -22257.159265 eV Core-core repulsion = 18952.006698 eV Total energy + Delta-G solvation = -3305.152567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.48943 -37.43523 -36.68738 -34.28818 -34.21607 -32.23673 -31.02903 -29.68848 -28.37139 -26.91817 -25.03809 -23.19033 -22.03897 -21.19819 -20.90602 -19.70619 -18.58160 -17.20713 -16.50654 -16.29130 -15.55792 -15.04179 -14.94899 -14.63721 -14.29304 -14.14482 -13.80696 -13.48934 -13.22738 -12.96844 -12.39499 -12.34172 -12.21997 -12.04807 -11.84271 -11.67330 -11.40443 -11.34250 -11.28940 -11.17926 -10.99836 -10.88309 -10.76950 -10.62572 -10.58790 -10.52340 -10.49699 -10.03668 -9.42459 -9.25877 -8.70536 -8.23339 -7.95806 -6.30348 -4.38584 3.13950 3.18365 3.26177 3.30474 3.60577 4.25319 4.47118 4.65847 4.79749 4.91539 4.93367 4.99626 5.02010 5.20436 5.25886 5.41196 5.45617 5.50954 5.55051 5.62265 5.69076 5.72086 5.74937 5.76589 5.84490 5.88433 5.90503 5.96779 6.02675 6.05090 6.15878 6.30189 6.31605 6.40928 6.44628 6.67112 6.89843 6.98760 7.29930 7.34068 7.71597 7.99995 8.18746 8.63761 8.70651 9.29043 9.38228 10.76812 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.054853 B = 0.002448 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.328601 B =11434.234656 C =11634.476866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.103 4.103 7 C -0.135 4.135 8 C 0.520 3.480 9 O -0.558 6.558 10 N -0.609 5.609 11 C 0.099 3.901 12 C -0.136 4.136 13 C 0.247 3.753 14 O -0.583 6.583 15 C -0.536 4.536 16 H 0.065 0.935 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.119 3.881 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.381 0.619 44 H 0.268 0.732 45 H 0.070 0.930 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.812 -9.063 -2.655 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.141 4.141 7 C -0.175 4.175 8 C 0.309 3.691 9 O -0.438 6.438 10 N -0.341 5.341 11 C -0.024 4.024 12 C -0.175 4.175 13 C 0.206 3.794 14 O -0.391 6.391 15 C -0.574 4.574 16 H 0.083 0.917 17 C -0.131 4.131 18 N -0.534 5.534 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.002 4.002 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.230 0.770 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.643 -10.141 -2.693 19.674 hybrid contribution 0.888 1.304 -0.221 1.593 sum -15.755 -8.836 -2.913 18.297 Atomic orbital electron populations 1.21781 0.96077 1.01439 1.01744 1.21551 0.95676 0.97193 1.02001 1.21637 0.95679 0.96525 1.01963 1.21603 0.94964 0.97012 1.02233 1.21623 0.95428 0.96717 1.01952 1.21337 0.94234 0.95055 1.03463 1.21638 0.92457 0.99461 1.03927 1.20284 0.89789 0.82529 0.76512 1.90646 1.70658 1.30807 1.51677 1.48662 1.08619 1.05594 1.71245 1.22171 0.97593 0.82991 0.99611 1.23165 0.94607 0.97335 1.02345 1.19618 0.92329 0.88124 0.79284 1.86139 1.95826 1.36592 1.20588 1.21458 1.03025 0.98174 1.34738 0.91714 1.24998 0.97427 0.96485 0.94146 1.69721 1.36379 1.09387 1.37952 0.86412 0.83318 0.78777 0.78461 1.20475 1.21017 1.19676 1.22351 0.78492 0.99281 1.00106 0.92939 0.92810 0.92824 0.92107 0.92084 0.92087 0.92114 0.91987 0.91951 0.92003 0.92072 0.91390 0.91311 0.89312 0.89450 0.92457 0.92920 0.89513 0.91414 0.76953 0.92224 0.91158 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.13 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -0.93 5.21 -26.73 -0.14 -1.07 16 4 C -0.12 -1.06 5.21 -26.73 -0.14 -1.20 16 5 C -0.12 -1.15 5.21 -26.73 -0.14 -1.29 16 6 C -0.10 -1.29 4.50 -26.73 -0.12 -1.41 16 7 C -0.13 -1.84 4.89 -27.89 -0.14 -1.98 16 8 C 0.52 9.88 7.85 -10.99 -0.09 9.79 16 9 O -0.56 -12.43 16.24 5.56 0.09 -12.34 16 10 N -0.61 -12.18 3.33 -170.52 -0.57 -12.75 16 11 C 0.10 1.78 6.49 -3.06 -0.02 1.76 16 12 C -0.14 -2.89 5.38 -24.90 -0.13 -3.03 16 13 C 0.25 5.95 0.88 -89.62 -0.08 5.87 16 14 O -0.58 -14.83 13.18 -35.23 -0.46 -15.29 16 15 C -0.54 -13.90 8.27 -34.44 -0.28 -14.19 16 16 H 0.06 1.68 7.79 -52.49 -0.41 1.27 16 17 C 0.07 1.84 5.27 -17.82 -0.09 1.74 16 18 N -0.90 -22.78 10.73 55.43 0.59 -22.19 16 19 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 C 0.12 2.71 6.08 -2.53 -0.02 2.69 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 36 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.93 7.54 -51.93 -0.39 1.54 16 42 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 43 H 0.38 9.62 7.51 45.56 0.34 9.96 16 44 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 45 H 0.07 1.55 8.03 -51.92 -0.42 1.13 16 46 H 0.07 1.68 8.04 -51.93 -0.42 1.27 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -28.25 369.01 -9.01 -37.26 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.03 Total: 8.66 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.18 Total: -3.97 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.03 Total: -34.94 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.37 Total: -27.63 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.25 -9.01 -37.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844013813.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.874 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds