Wall clock time and date at job start Tue Mar 31 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46855 * 2 1 4 4 C 1.52999 * 109.46723 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47182 * 60.00476 * 4 3 2 6 6 C 1.53002 * 109.47269 * 300.00005 * 4 3 2 7 7 C 1.50704 * 109.47280 * 180.02562 * 4 3 2 8 8 O 1.20831 * 119.99484 * 359.97438 * 7 4 3 9 9 O 1.34219 * 120.00581 * 180.02562 * 7 4 3 10 10 C 1.45200 * 117.00715 * 179.97438 * 9 7 4 11 11 C 1.53352 * 109.41906 * 270.13037 * 10 9 7 12 12 C 1.53190 * 109.15070 * 178.67274 * 11 10 9 13 13 N 1.46925 * 108.89356 * 54.57285 * 12 11 10 14 14 C 1.36935 * 120.62758 * 126.30089 * 13 12 11 15 15 H 1.08001 * 120.00088 * 332.62829 * 14 13 12 16 16 C 1.38817 * 119.99782 * 152.62208 * 14 13 12 17 17 N 1.31618 * 119.99923 * 159.36242 * 16 14 13 18 18 Si 1.86801 * 120.00195 * 339.36341 * 16 14 13 19 19 H 1.48501 * 109.47054 * 92.89675 * 18 16 14 20 20 H 1.48497 * 109.47324 * 212.90179 * 18 16 14 21 21 H 1.48501 * 109.46722 * 332.89954 * 18 16 14 22 22 C 1.46926 * 118.73822 * 306.31916 * 13 12 11 23 23 C 1.53037 * 109.46364 * 149.99626 * 10 9 7 24 24 H 1.09000 * 109.47267 * 59.99834 * 1 2 3 25 25 H 1.09003 * 109.47299 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47176 * 300.00114 * 1 2 3 27 27 H 1.08997 * 109.47176 * 239.99886 * 2 1 3 28 28 H 1.09000 * 109.46376 * 119.99969 * 2 1 3 29 29 H 1.09004 * 109.46974 * 60.00181 * 3 2 1 30 30 H 1.08996 * 109.47777 * 299.99949 * 3 2 1 31 31 H 1.08999 * 109.47293 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46594 * 299.99444 * 5 4 3 33 33 H 1.09000 * 109.46978 * 59.99432 * 5 4 3 34 34 H 1.08997 * 109.47219 * 299.99935 * 6 4 3 35 35 H 1.08996 * 109.46995 * 60.00320 * 6 4 3 36 36 H 1.09009 * 109.46864 * 180.02562 * 6 4 3 37 37 H 1.09008 * 109.45469 * 30.02491 * 10 9 7 38 38 H 1.09004 * 109.68561 * 58.70026 * 11 10 9 39 39 H 1.09004 * 109.47287 * 298.50687 * 11 10 9 40 40 H 1.09004 * 109.58215 * 294.71811 * 12 11 10 41 41 H 1.08997 * 109.58828 * 174.43980 * 12 11 10 42 42 H 0.96999 * 119.99917 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.58248 * 173.39705 * 22 13 12 44 44 H 1.08994 * 109.58922 * 293.68210 * 22 13 12 45 45 H 1.09003 * 109.49698 * 61.44018 * 23 10 9 46 46 H 1.08994 * 109.52761 * 301.35432 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0805 0.7211 -1.2483 6 6 4.0794 0.7214 1.2502 7 6 4.0724 2.8633 0.0013 8 8 3.2871 3.7817 0.0008 9 8 5.3919 3.1086 0.0014 10 6 5.8037 4.5010 0.0014 11 6 5.9453 4.9909 -1.4448 12 6 6.3475 6.4690 -1.4377 13 7 7.5601 6.6282 -0.6234 14 6 8.6686 7.2472 -1.1364 15 1 8.8527 7.2303 -2.2005 16 6 9.5557 7.8964 -0.2888 17 7 10.7891 8.1326 -0.6828 18 14 8.9989 8.4350 1.4110 19 1 9.3188 7.3713 2.3967 20 1 9.7019 9.6874 1.7885 21 1 7.5334 8.6743 1.3991 22 6 7.5608 6.1102 0.7515 23 6 7.1465 4.6356 0.7231 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 5.1705 0.7207 -1.2477 32 1 3.7172 -0.3065 -1.2483 33 1 3.7174 1.2349 -2.1385 34 1 3.7158 1.2353 2.1400 35 1 3.7161 -0.3062 1.2502 36 1 5.1695 0.7218 1.2508 37 1 5.0533 5.1015 0.5157 38 1 4.9952 4.8748 -1.9665 39 1 6.7133 4.4074 -1.9526 40 1 5.5405 7.0652 -1.0117 41 1 6.5461 6.7986 -2.4574 42 1 11.4091 8.5860 -0.0903 43 1 8.5609 6.2007 1.1755 44 1 6.8546 6.6787 1.3565 45 1 7.9032 4.0553 0.1950 46 1 7.0505 4.2651 1.7436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845497682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:22 Heat of formation + Delta-G solvation = -89.597407 kcal Electronic energy + Delta-G solvation = -23524.234993 eV Core-core repulsion = 20220.796981 eV Total energy + Delta-G solvation = -3303.438012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76310 -38.25341 -36.97787 -35.88724 -33.05646 -32.51796 -30.61734 -30.37343 -27.63751 -26.85042 -25.53861 -24.10921 -22.96609 -22.08486 -21.21660 -19.63232 -19.17147 -17.27323 -17.01044 -16.25309 -15.91843 -15.41773 -15.24142 -14.65101 -14.22621 -13.95080 -13.88726 -13.67274 -13.37593 -13.02535 -12.94063 -12.64534 -12.52035 -12.30637 -12.18183 -12.02831 -11.92772 -11.86280 -11.37107 -11.24728 -11.21913 -10.97711 -10.86120 -10.75922 -10.72379 -10.49880 -10.25204 -10.06580 -9.83258 -9.74086 -9.42449 -8.67242 -7.04566 -5.97564 -3.34183 2.32221 2.78203 3.29398 3.47049 3.49987 4.34225 4.48276 4.50500 4.53692 4.82696 4.83708 4.87863 4.94400 5.13742 5.18115 5.21078 5.34769 5.35923 5.39593 5.47303 5.52392 5.54741 5.57695 5.63659 5.69715 5.76080 5.81559 5.82741 5.93209 5.97330 6.07287 6.10781 6.11090 6.17812 6.25789 6.33358 6.53203 6.56507 6.63895 6.71482 6.93600 7.91220 7.92539 8.29927 8.89586 9.68266 10.04949 11.18244 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.039065 B = 0.003519 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.584209 B = 7955.910304 C = 8041.076399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.101 4.101 4 C -0.055 4.055 5 C -0.143 4.143 6 C -0.144 4.144 7 C 0.466 3.534 8 O -0.511 6.511 9 O -0.351 6.351 10 C 0.097 3.903 11 C -0.147 4.147 12 C 0.152 3.848 13 N -0.606 5.606 14 C -0.262 4.262 15 H 0.087 0.913 16 C 0.024 3.976 17 N -0.907 5.907 18 Si 0.880 3.120 19 H -0.287 1.287 20 H -0.302 1.302 21 H -0.270 1.270 22 C 0.129 3.871 23 C -0.128 4.128 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.026 0.974 41 H 0.070 0.930 42 H 0.263 0.737 43 H 0.081 0.919 44 H 0.028 0.972 45 H 0.077 0.923 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.651 -17.708 2.409 24.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.056 4.056 5 C -0.200 4.200 6 C -0.201 4.201 7 C 0.308 3.692 8 O -0.399 6.399 9 O -0.268 6.268 10 C 0.043 3.957 11 C -0.186 4.186 12 C 0.026 3.974 13 N -0.329 5.329 14 C -0.390 4.390 15 H 0.105 0.895 16 C -0.175 4.175 17 N -0.549 5.549 18 Si 0.710 3.290 19 H -0.215 1.215 20 H -0.230 1.230 21 H -0.195 1.195 22 C 0.003 3.997 23 C -0.168 4.168 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.044 0.956 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.046 0.954 45 H 0.096 0.904 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.676 -17.290 2.417 24.143 hybrid contribution -0.242 0.555 1.003 1.172 sum -16.919 -16.735 3.420 24.042 Atomic orbital electron populations 1.21765 0.95702 1.01514 1.02018 1.21669 0.95971 0.96330 1.02436 1.21545 0.91382 0.97225 1.03672 1.20545 0.96769 0.89241 0.99010 1.21916 1.02399 1.00418 0.95309 1.21920 1.02372 1.00467 0.95306 1.23596 0.81373 0.92137 0.72060 1.90636 1.56869 1.46843 1.45517 1.86541 1.24812 1.32545 1.82886 1.22916 0.96969 0.77715 0.98138 1.22503 1.01221 1.00064 0.94832 1.20877 0.88638 0.91484 0.96433 1.44420 1.11712 1.66341 1.10468 1.18930 0.97651 1.27809 0.94571 0.89515 1.25282 0.95795 0.98495 0.97933 1.69833 1.03403 1.44311 1.37380 0.86987 0.79045 0.77636 0.85288 1.21499 1.22984 1.19499 1.21373 1.00441 0.90242 0.87680 1.22215 0.94846 1.00317 0.99378 0.92678 0.92742 0.92706 0.91472 0.91513 0.91094 0.91023 0.91011 0.90896 0.92092 0.92183 0.90871 0.91033 0.90397 0.92262 0.90897 0.95611 0.91157 0.92696 0.90072 0.95406 0.90438 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.89 5.23 -26.73 -0.14 -1.03 16 3 C -0.10 -0.96 3.56 -26.73 -0.10 -1.06 16 4 C -0.05 -0.57 0.74 -155.66 -0.11 -0.68 16 5 C -0.14 -1.28 8.05 37.16 0.30 -0.98 16 6 C -0.14 -1.26 8.05 37.16 0.30 -0.96 16 7 C 0.47 6.84 6.53 36.01 0.23 7.07 16 8 O -0.51 -8.88 15.20 -18.75 -0.29 -9.17 16 9 O -0.35 -5.57 9.68 -39.23 -0.38 -5.94 16 10 C 0.10 1.71 2.42 -26.53 -0.06 1.64 16 11 C -0.15 -2.63 5.75 -26.45 -0.15 -2.78 16 12 C 0.15 3.10 6.50 -3.71 -0.02 3.07 16 13 N -0.61 -14.58 2.77 -172.32 -0.48 -15.06 16 14 C -0.26 -7.32 10.03 -15.06 -0.15 -7.47 16 15 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 16 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 17 N -0.91 -27.73 13.97 55.49 0.78 -26.95 16 18 Si 0.88 22.32 24.34 -169.99 -4.14 18.18 16 19 H -0.29 -6.97 6.62 56.52 0.37 -6.59 16 20 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 21 H -0.27 -6.77 6.64 56.52 0.38 -6.39 16 22 C 0.13 2.83 4.21 -3.71 -0.02 2.82 16 23 C -0.13 -2.36 5.74 -26.61 -0.15 -2.51 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.43 6.43 -51.93 -0.33 0.09 16 28 H 0.07 0.42 6.43 -51.93 -0.33 0.09 16 29 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 30 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 32 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.49 6.43 -51.93 -0.33 0.15 16 36 H 0.07 0.66 8.11 -51.92 -0.42 0.24 16 37 H 0.08 1.45 7.16 -51.92 -0.37 1.08 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 1.40 7.93 -51.93 -0.41 0.99 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.08 1.93 4.50 -51.93 -0.23 1.69 16 44 H 0.03 0.61 7.07 -51.93 -0.37 0.24 16 45 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -31.33 350.87 -7.26 -38.59 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -8.24 Total: -2.03 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 0.20 Total: -2.92 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.30 Total: -42.01 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.67 Total: -15.11 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.18 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.33 -7.26 -38.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845497682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.003 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds