Wall clock time and date at job start Tue Mar 31 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.51046 * 2 1 4 4 O 1.43368 * 109.63379 * 120.31885 * 2 1 3 5 5 C 1.44196 * 107.29026 * 120.54347 * 4 2 1 6 6 C 1.54916 * 103.07317 * 21.43874 * 5 4 2 7 7 H 1.08993 * 110.97787 * 82.55088 * 6 5 4 8 8 C 1.53006 * 110.97329 * 206.29013 * 6 5 4 9 9 C 1.53000 * 109.46871 * 184.99786 * 8 6 5 10 10 N 1.46505 * 109.47154 * 179.97438 * 9 8 6 11 11 C 1.36938 * 119.99668 * 90.00277 * 10 9 8 12 12 H 1.08000 * 120.00188 * 216.98018 * 11 10 9 13 13 C 1.38818 * 119.99604 * 36.97979 * 11 10 9 14 14 N 1.31610 * 120.00346 * 21.48613 * 13 11 10 15 15 Si 1.86806 * 119.99548 * 201.48254 * 13 11 10 16 16 H 1.48494 * 109.47419 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46895 * 120.00582 * 15 13 11 18 18 H 1.48503 * 109.46922 * 240.00107 * 15 13 11 19 19 C 1.46496 * 120.00261 * 270.00714 * 10 9 8 20 20 C 1.54271 * 110.03156 * 241.47661 * 19 10 9 21 21 C 1.54959 * 104.15751 * 217.13745 * 20 19 10 22 22 C 1.54890 * 102.78169 * 37.89142 * 21 20 19 23 23 C 1.53871 * 110.03275 * 124.25974 * 19 10 9 24 24 O 1.43751 * 109.62911 * 239.68131 * 2 1 3 25 25 H 1.09000 * 109.46657 * 301.13846 * 1 2 3 26 26 H 1.09001 * 109.47171 * 61.13225 * 1 2 3 27 27 H 1.08996 * 109.47419 * 181.13478 * 1 2 3 28 28 H 1.09003 * 109.46727 * 178.86515 * 3 2 1 29 29 H 1.08997 * 109.46770 * 298.86129 * 3 2 1 30 30 H 1.09000 * 109.46940 * 58.86686 * 3 2 1 31 31 H 1.08995 * 110.69459 * 139.83926 * 5 4 2 32 32 H 1.09002 * 110.69425 * 263.04005 * 5 4 2 33 33 H 1.08990 * 109.47434 * 305.00330 * 8 6 5 34 34 H 1.09000 * 109.47050 * 65.00486 * 8 6 5 35 35 H 1.09000 * 109.47654 * 300.00425 * 9 8 6 36 36 H 1.09000 * 109.46712 * 60.00493 * 9 8 6 37 37 H 0.97001 * 120.00048 * 174.93028 * 14 13 11 38 38 H 1.08994 * 110.01764 * 2.86400 * 19 10 9 39 39 H 1.08996 * 110.48146 * 335.78634 * 20 19 10 40 40 H 1.09002 * 110.48350 * 98.42171 * 20 19 10 41 41 H 1.09002 * 110.72203 * 279.56952 * 21 20 19 42 42 H 1.09011 * 110.91889 * 156.29537 * 21 20 19 43 43 H 1.08998 * 110.48338 * 203.40700 * 22 21 20 44 44 H 1.08996 * 110.59973 * 80.81234 * 22 21 20 45 45 H 1.09002 * 110.03423 * 238.56763 * 23 19 10 46 46 H 1.09009 * 110.03325 * 359.95312 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 8 2.0117 -0.6817 1.1656 5 6 2.8147 -1.7903 0.7126 6 6 3.2064 -1.3739 -0.7273 7 1 4.0652 -0.7028 -0.7194 8 6 3.4829 -2.6024 -1.5965 9 6 3.9857 -2.1526 -2.9698 10 7 4.2510 -3.3288 -3.8020 11 6 3.2585 -3.8481 -4.5897 12 1 3.1759 -4.9170 -4.7197 13 6 2.3587 -3.0004 -5.2212 14 7 2.6751 -1.7395 -5.4265 15 14 0.6985 -3.6496 -5.7797 16 1 0.5879 -5.0893 -5.4335 17 1 -0.3832 -2.8928 -5.0996 18 1 0.5706 -3.4823 -7.2498 19 6 5.5780 -3.9494 -3.7914 20 6 6.2018 -3.8870 -5.2009 21 6 6.9599 -5.2314 -5.3397 22 6 6.0155 -6.2323 -4.6286 23 6 5.4599 -5.4397 -3.4273 24 8 2.0129 -0.6835 -1.1688 25 1 -0.3632 0.5314 0.8796 26 1 -0.3633 0.4961 -0.9000 27 1 -0.3634 -1.0274 0.0204 28 1 3.1308 1.4414 0.0204 29 1 1.6947 1.9502 -0.9000 30 1 1.6615 1.9620 0.8797 31 1 3.7018 -1.9035 1.3357 32 1 2.2302 -2.7103 0.7020 33 1 4.2400 -3.2233 -1.1179 34 1 2.5644 -3.1769 -1.7163 35 1 3.2285 -1.5316 -3.4485 36 1 4.9042 -1.5780 -2.8501 37 1 2.0784 -1.1658 -5.9321 38 1 6.2224 -3.4399 -3.0750 39 1 5.4231 -3.8082 -5.9595 40 1 6.8940 -3.0483 -5.2749 41 1 7.9244 -5.1843 -4.8341 42 1 7.0879 -5.4996 -6.3885 43 1 6.5724 -7.1043 -4.2857 44 1 5.2064 -6.5346 -5.2933 45 1 6.0478 -5.6538 -2.5347 46 1 4.4153 -5.7011 -3.2577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851780657.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:34 Heat of formation + Delta-G solvation = -87.507387 kcal Electronic energy + Delta-G solvation = -24018.804195 eV Core-core repulsion = 20715.456813 eV Total energy + Delta-G solvation = -3303.347382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.29592 -37.71889 -35.14126 -34.37744 -33.15703 -31.26695 -30.08972 -27.82228 -27.40400 -27.20996 -26.20916 -23.97289 -21.83933 -20.86596 -20.41461 -19.86130 -19.03405 -17.15694 -16.17278 -16.01794 -15.35706 -15.05649 -14.72601 -14.52494 -14.08567 -13.62416 -13.36855 -13.28048 -13.06287 -12.65318 -12.48734 -12.25635 -12.09095 -11.98884 -11.87584 -11.66593 -11.49283 -11.12404 -10.94451 -10.77541 -10.61079 -10.40051 -10.34874 -10.21758 -10.14203 -9.94746 -9.78401 -9.72630 -9.52761 -9.41200 -9.35026 -8.39156 -6.43380 -5.71584 -3.25428 3.39639 3.49123 3.50004 3.64982 4.22248 4.51814 4.80813 4.99087 5.06277 5.21146 5.32082 5.35109 5.47081 5.48758 5.53690 5.59015 5.65676 5.75846 5.76971 5.81484 5.87846 5.98019 6.13663 6.14949 6.22993 6.27515 6.30212 6.34696 6.40047 6.45847 6.56891 6.58606 6.65383 6.67719 6.76012 6.89455 7.01207 7.15663 7.27286 7.42856 7.46454 7.84121 7.95848 8.63665 9.28633 9.92532 10.49847 11.30400 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015743 B = 0.005601 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.152945 B = 4997.769753 C = 6075.505134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.245 3.755 3 C -0.168 4.168 4 O -0.388 6.388 5 C 0.024 3.976 6 C 0.055 3.945 7 H 0.076 0.924 8 C -0.128 4.128 9 C 0.148 3.852 10 N -0.578 5.578 11 C -0.254 4.254 12 H 0.061 0.939 13 C 0.017 3.983 14 N -0.885 5.885 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.292 1.292 19 C 0.170 3.830 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.134 4.134 24 O -0.353 6.353 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.018 0.982 37 H 0.254 0.746 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.061 0.939 45 H 0.042 0.958 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 0.716 9.449 9.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.168 3.832 3 C -0.226 4.226 4 O -0.310 6.310 5 C -0.052 4.052 6 C -0.003 4.003 7 H 0.094 0.906 8 C -0.168 4.168 9 C 0.022 3.978 10 N -0.297 5.297 11 C -0.384 4.384 12 H 0.078 0.922 13 C -0.184 4.184 14 N -0.528 5.528 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.219 1.219 19 C 0.062 3.938 20 C -0.170 4.170 21 C -0.162 4.162 22 C -0.155 4.155 23 C -0.173 4.173 24 O -0.273 6.273 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.037 0.963 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.243 0.946 9.408 9.718 hybrid contribution -0.735 -0.299 -0.317 0.854 sum 1.508 0.647 9.092 9.239 Atomic orbital electron populations 1.22040 0.92897 1.03373 1.02665 1.23325 0.93727 0.90511 0.75633 1.22352 1.02148 0.95275 1.02811 1.88804 1.68822 1.43195 1.30161 1.24276 0.95134 0.90339 0.95497 1.24008 0.88381 0.95421 0.92485 0.90649 1.22289 1.02026 0.93909 0.98541 1.20942 0.99206 0.90116 0.87538 1.43943 1.06224 1.32580 1.46918 1.18889 1.05104 0.90979 1.23386 0.92164 1.25143 0.99650 0.96018 0.97561 1.69880 1.36323 1.06054 1.40497 0.86422 0.85179 0.78559 0.77792 1.20234 1.21458 1.21863 1.21039 0.87274 0.91573 0.93895 1.22824 0.98844 0.94350 1.00988 1.22445 0.97647 0.97064 0.99022 1.22240 0.98428 0.96904 0.97897 1.22586 1.01118 0.97572 0.96036 1.89434 1.41376 1.66093 1.30406 0.91122 0.90728 0.91597 0.91976 0.90605 0.91377 0.88908 0.90773 0.92191 0.91061 0.87804 0.96349 0.93604 0.93640 0.89757 0.93802 0.92964 0.92950 0.93525 0.91997 0.93941 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.24 37.16 0.34 -1.78 16 2 C 0.25 3.86 1.47 -26.73 -0.04 3.82 16 3 C -0.17 -2.26 9.19 37.16 0.34 -1.92 16 4 O -0.39 -6.11 10.87 -59.04 -0.64 -6.76 16 5 C 0.02 0.35 7.54 38.17 0.29 0.64 16 6 C 0.06 0.93 3.43 -25.72 -0.09 0.85 16 7 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 8 C -0.13 -2.44 5.31 -26.73 -0.14 -2.58 16 9 C 0.15 3.39 5.23 -4.04 -0.02 3.37 16 10 N -0.58 -13.67 2.39 -164.39 -0.39 -14.06 16 11 C -0.25 -6.64 7.76 -15.06 -0.12 -6.75 16 12 H 0.06 1.60 6.99 -52.49 -0.37 1.23 16 13 C 0.02 0.46 4.96 -17.43 -0.09 0.37 16 14 N -0.89 -25.21 11.43 55.49 0.63 -24.57 16 15 Si 0.89 21.68 29.61 -169.99 -5.03 16.65 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 19 C 0.17 3.47 3.41 -66.81 -0.23 3.24 16 20 C -0.13 -2.62 6.43 -25.03 -0.16 -2.78 16 21 C -0.12 -2.04 6.91 -24.70 -0.17 -2.22 16 22 C -0.12 -1.95 6.83 -25.07 -0.17 -2.13 16 23 C -0.13 -2.45 6.14 -25.61 -0.16 -2.61 16 24 O -0.35 -6.75 10.69 -59.04 -0.63 -7.38 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.07 8.04 -51.93 -0.42 0.65 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.10 2.78 5.47 -51.93 -0.28 2.49 16 36 H 0.02 0.40 7.96 -51.93 -0.41 -0.01 16 37 H 0.25 7.07 8.32 -40.82 -0.34 6.73 16 38 H 0.05 0.89 7.85 -51.93 -0.41 0.48 16 39 H 0.08 1.99 7.18 -51.93 -0.37 1.62 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.46 6.77 -51.92 -0.35 1.11 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -28.61 359.00 -9.58 -38.18 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -8.51 Total: 3.00 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.41 Total: -10.47 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.24 Total: -38.64 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -1.27 Total: -14.13 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.61 -9.58 -38.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851780657.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.324 kcal (2) G-P(sol) polarization free energy of solvation -28.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds