Wall clock time and date at job start Tue Mar 31 2020 05:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.62867 * 2 1 4 4 O 1.43368 * 109.62771 * 120.39475 * 2 1 3 5 5 C 1.44197 * 107.29042 * 119.21160 * 4 2 1 6 6 C 1.54913 * 103.07090 * 338.55943 * 5 4 2 7 7 H 1.09003 * 110.98181 * 277.41412 * 6 5 4 8 8 C 1.53003 * 110.97353 * 153.67404 * 6 5 4 9 9 C 1.53003 * 109.46967 * 178.11091 * 8 6 5 10 10 N 1.46503 * 109.46757 * 179.97438 * 9 8 6 11 11 C 1.36934 * 119.99877 * 90.00414 * 10 9 8 12 12 H 1.08006 * 119.99662 * 213.24806 * 11 10 9 13 13 C 1.38805 * 120.00642 * 33.24793 * 11 10 9 14 14 N 1.31619 * 119.99721 * 28.39428 * 13 11 10 15 15 Si 1.86795 * 120.00369 * 208.39555 * 13 11 10 16 16 H 1.48501 * 109.47152 * 179.97438 * 15 13 11 17 17 H 1.48497 * 109.47196 * 60.00272 * 15 13 11 18 18 H 1.48498 * 109.47238 * 300.00100 * 15 13 11 19 19 C 1.46500 * 120.00161 * 269.99458 * 10 9 8 20 20 C 1.54262 * 110.03540 * 237.66940 * 19 10 9 21 21 C 1.54958 * 104.16026 * 217.13537 * 20 19 10 22 22 C 1.54888 * 102.78026 * 37.88826 * 21 20 19 23 23 C 1.53866 * 110.03207 * 120.44814 * 19 10 9 24 24 O 1.43788 * 109.59602 * 239.75593 * 2 1 3 25 25 H 1.09001 * 109.47059 * 301.06337 * 1 2 3 26 26 H 1.09004 * 109.46636 * 61.05898 * 1 2 3 27 27 H 1.08994 * 109.47637 * 181.05876 * 1 2 3 28 28 H 1.09003 * 109.46518 * 178.93604 * 3 2 1 29 29 H 1.08991 * 109.47273 * 298.93785 * 3 2 1 30 30 H 1.09003 * 109.47106 * 58.94132 * 3 2 1 31 31 H 1.09003 * 110.69350 * 220.16601 * 5 4 2 32 32 H 1.08993 * 110.69342 * 96.95518 * 5 4 2 33 33 H 1.09000 * 109.47126 * 58.11083 * 8 6 5 34 34 H 1.08997 * 109.46831 * 298.10882 * 8 6 5 35 35 H 1.09000 * 109.47205 * 60.00040 * 9 8 6 36 36 H 1.08997 * 109.47175 * 299.99580 * 9 8 6 37 37 H 0.97001 * 120.00279 * 5.84032 * 14 13 11 38 38 H 1.09009 * 110.01286 * 359.05810 * 19 10 9 39 39 H 1.09000 * 110.48311 * 335.78329 * 20 19 10 40 40 H 1.09004 * 110.48692 * 98.42642 * 20 19 10 41 41 H 1.09002 * 110.72246 * 279.57196 * 21 20 19 42 42 H 1.09007 * 110.76719 * 156.22345 * 21 20 19 43 43 H 1.09000 * 110.49217 * 203.40635 * 22 21 20 44 44 H 1.09000 * 110.48716 * 80.75687 * 22 21 20 45 45 H 1.09003 * 110.03660 * 238.57582 * 23 19 10 46 46 H 1.09004 * 110.03196 * 359.95659 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 8 2.0116 -0.6832 1.1648 5 6 2.7884 -1.8098 0.7103 6 6 2.2651 -2.0381 -0.7298 7 1 1.3460 -2.6240 -0.7228 8 6 3.3310 -2.7070 -1.6002 9 6 2.7632 -2.9587 -2.9985 10 7 3.7839 -3.5986 -3.8321 11 6 3.8765 -4.9642 -3.8736 12 1 4.8400 -5.4366 -3.9963 13 6 2.7322 -5.7413 -3.7582 14 7 1.5715 -5.2671 -4.1584 15 14 2.8394 -7.4602 -3.0348 16 1 1.4885 -8.0767 -3.0212 17 1 3.3610 -7.3814 -1.6467 18 1 3.7539 -8.2888 -3.8609 19 6 4.7055 -2.7776 -4.6213 20 6 4.5965 -3.1479 -6.1148 21 6 6.0513 -3.0443 -6.6383 22 6 6.8817 -3.5988 -5.4542 23 6 6.1579 -3.0637 -4.2013 24 8 2.0123 -0.6823 -1.1702 25 1 -0.3633 0.5303 0.8803 26 1 -0.3633 0.4973 -0.8994 27 1 -0.3634 -1.0274 0.0190 28 1 3.1338 1.4380 0.0191 29 1 1.6977 1.9503 -0.8993 30 1 1.6666 1.9614 0.8804 31 1 2.5987 -2.6846 1.3323 32 1 3.8507 -1.5661 0.7000 33 1 3.6240 -3.6559 -1.1508 34 1 4.2016 -2.0554 -1.6734 35 1 2.4702 -2.0098 -3.4479 36 1 1.8925 -3.6103 -2.9253 37 1 1.5276 -4.4102 -4.6110 38 1 4.4775 -1.7210 -4.4809 39 1 4.2214 -4.1649 -6.2293 40 1 3.9512 -2.4413 -6.6369 41 1 6.3148 -2.0065 -6.8424 42 1 6.1869 -3.6605 -7.5272 43 1 7.9034 -3.2213 -5.4949 44 1 6.8761 -4.6887 -5.4617 45 1 6.6350 -2.1459 -3.8578 46 1 6.1770 -3.8129 -3.4097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851780658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:37 Heat of formation + Delta-G solvation = -90.476006 kcal Electronic energy + Delta-G solvation = -24012.745157 eV Core-core repulsion = 20709.269046 eV Total energy + Delta-G solvation = -3303.476111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.39887 -37.87001 -35.32282 -34.57567 -33.30442 -31.24528 -30.13772 -27.90026 -27.50926 -27.32275 -26.05329 -23.99920 -21.84895 -20.98301 -20.44897 -19.95423 -19.20975 -17.27135 -16.69972 -16.12224 -15.47654 -15.12801 -14.80367 -14.56416 -13.82471 -13.67606 -13.56364 -13.44893 -13.00925 -12.74226 -12.66762 -12.42626 -12.22999 -12.13321 -12.06488 -11.76781 -11.58854 -11.25982 -11.01812 -10.72199 -10.51398 -10.46585 -10.31671 -10.18275 -10.09572 -9.97693 -9.95741 -9.85569 -9.71963 -9.48915 -9.21006 -8.30256 -6.75430 -6.00145 -3.27496 3.48836 3.51366 3.56235 3.69403 4.10609 4.56967 4.74000 4.89040 4.97305 5.13016 5.21884 5.30522 5.40071 5.40719 5.48820 5.50310 5.55216 5.66766 5.69376 5.71152 5.78615 5.89504 6.03458 6.08619 6.11835 6.18307 6.23259 6.25761 6.30292 6.36220 6.44869 6.50183 6.56829 6.60687 6.69208 6.79432 6.93310 6.97145 7.16653 7.27504 7.30120 7.39105 8.15979 8.61787 9.19113 9.88647 10.34282 11.19125 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.005602 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.539264 B = 4997.153549 C = 6174.186099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.246 3.754 3 C -0.152 4.152 4 O -0.387 6.387 5 C 0.025 3.975 6 C 0.053 3.947 7 H 0.083 0.917 8 C -0.122 4.122 9 C 0.139 3.861 10 N -0.587 5.587 11 C -0.339 4.339 12 H 0.053 0.947 13 C -0.022 4.022 14 N -0.904 5.904 15 Si 1.054 2.946 16 H -0.287 1.287 17 H -0.294 1.294 18 H -0.293 1.293 19 C 0.170 3.830 20 C -0.132 4.132 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.133 4.133 24 O -0.365 6.365 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.031 0.969 36 H 0.081 0.919 37 H 0.269 0.731 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.042 0.958 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.726 9.084 5.680 11.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.170 3.830 3 C -0.209 4.209 4 O -0.308 6.308 5 C -0.051 4.051 6 C -0.005 4.005 7 H 0.100 0.900 8 C -0.162 4.162 9 C 0.013 3.987 10 N -0.307 5.307 11 C -0.468 4.468 12 H 0.071 0.929 13 C -0.225 4.225 14 N -0.544 5.544 15 Si 0.884 3.116 16 H -0.213 1.213 17 H -0.222 1.222 18 H -0.220 1.220 19 C 0.063 3.937 20 C -0.171 4.171 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.172 4.172 24 O -0.286 6.286 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.799 7.901 6.127 10.159 hybrid contribution 1.015 1.165 -0.450 1.609 sum 2.813 9.066 5.677 11.061 Atomic orbital electron populations 1.22358 0.94218 1.03360 1.02787 1.23321 0.92789 0.91357 0.75582 1.22041 1.02297 0.93840 1.02719 1.88818 1.69688 1.42366 1.29942 1.24269 0.96259 0.89094 0.95499 1.24074 0.99916 0.83828 0.92672 0.89950 1.22189 0.96028 0.99243 0.98723 1.20934 0.94080 0.96035 0.87699 1.44098 1.36936 1.02496 1.47183 1.19711 0.94107 0.81567 1.51408 0.92922 1.25726 0.93165 1.03785 0.99820 1.70764 1.26903 1.21145 1.35565 0.83676 0.75441 0.76020 0.76428 1.21253 1.22169 1.22043 1.21041 0.89692 0.93159 0.89842 1.22796 0.94471 1.02757 0.97081 1.22430 0.96938 0.99386 0.97308 1.22243 0.97234 1.00405 0.95563 1.22584 0.97138 0.99689 0.97801 1.89311 1.85735 1.22431 1.31104 0.91240 0.90728 0.91727 0.91666 0.90853 0.90978 0.88536 0.90832 0.90263 0.92509 0.95036 0.90122 0.91955 0.93495 0.89940 0.93739 0.92811 0.92822 0.93385 0.92001 0.93918 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 9.20 37.16 0.34 -1.82 16 2 C 0.25 3.60 1.47 -26.73 -0.04 3.56 16 3 C -0.15 -1.84 9.24 37.16 0.34 -1.49 16 4 O -0.39 -5.92 10.87 -59.03 -0.64 -6.56 16 5 C 0.03 0.37 7.54 38.17 0.29 0.66 16 6 C 0.05 0.89 3.45 -25.72 -0.09 0.81 16 7 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 8 C -0.12 -2.33 5.32 -26.73 -0.14 -2.47 16 9 C 0.14 3.13 4.78 -4.04 -0.02 3.11 16 10 N -0.59 -13.81 2.20 -164.39 -0.36 -14.17 16 11 C -0.34 -8.79 7.54 -15.06 -0.11 -8.91 16 12 H 0.05 1.41 7.33 -52.48 -0.38 1.03 16 13 C -0.02 -0.59 4.80 -17.43 -0.08 -0.68 16 14 N -0.90 -25.91 12.15 55.49 0.67 -25.23 16 15 Si 1.05 24.47 30.00 -169.99 -5.10 19.37 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.17 3.53 3.42 -66.82 -0.23 3.31 16 20 C -0.13 -2.64 6.42 -25.04 -0.16 -2.80 16 21 C -0.12 -2.05 6.91 -24.70 -0.17 -2.22 16 22 C -0.12 -1.98 6.83 -25.07 -0.17 -2.15 16 23 C -0.13 -2.49 6.15 -25.61 -0.16 -2.64 16 24 O -0.36 -6.31 10.55 -59.03 -0.62 -6.93 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 33 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.03 0.71 7.82 -51.93 -0.41 0.30 16 36 H 0.08 2.05 5.29 -51.93 -0.27 1.78 16 37 H 0.27 7.86 7.23 -40.82 -0.30 7.56 16 38 H 0.05 0.96 7.82 -51.92 -0.41 0.55 16 39 H 0.08 1.93 7.02 -51.93 -0.36 1.57 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.07 1.49 7.07 -51.93 -0.37 1.12 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -28.15 358.05 -9.53 -37.69 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.48 Total: 4.19 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -0.40 Total: -13.74 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.31 Total: -39.40 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -1.26 Total: -13.49 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -5.10 Total: 19.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.15 -9.53 -37.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851780658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.790 kcal (2) G-P(sol) polarization free energy of solvation -28.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds