Wall clock time and date at job start Tue Mar 31 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.50189 * 2 1 4 4 O 1.43749 * 109.63002 * 120.31341 * 2 1 3 5 5 C 1.44791 * 104.81615 * 95.56815 * 4 2 1 6 6 C 1.54925 * 101.71680 * 36.10203 * 5 4 2 7 7 H 1.08996 * 110.69060 * 83.00512 * 6 5 4 8 8 C 1.52994 * 110.69275 * 206.04005 * 6 5 4 9 9 C 1.53005 * 109.46804 * 185.00212 * 8 6 5 10 10 N 1.46901 * 109.47154 * 185.23383 * 9 8 6 11 11 C 1.46901 * 110.99761 * 283.79204 * 10 9 8 12 12 C 1.50694 * 109.47136 * 170.00071 * 11 10 9 13 13 H 1.08002 * 120.00160 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00147 * 179.72605 * 12 11 10 15 15 N 1.31517 * 120.00455 * 180.27217 * 14 12 11 16 16 Si 1.86801 * 119.99873 * 0.27794 * 14 12 11 17 17 H 1.48498 * 109.47604 * 90.00005 * 16 14 12 18 18 H 1.48505 * 109.47174 * 210.00118 * 16 14 12 19 19 H 1.48498 * 109.46894 * 329.99774 * 16 14 12 20 20 C 1.46901 * 110.99963 * 159.84071 * 10 9 8 21 21 C 1.53001 * 109.47314 * 287.60167 * 20 10 9 22 22 C 1.52999 * 117.49644 * 245.55512 * 21 20 10 23 23 C 1.52991 * 117.49786 * 176.89388 * 21 20 10 24 24 O 1.43362 * 109.63544 * 239.68135 * 2 1 3 25 25 H 1.08997 * 109.47432 * 301.13734 * 1 2 3 26 26 H 1.09004 * 109.46997 * 61.14095 * 1 2 3 27 27 H 1.09000 * 109.46794 * 181.13230 * 1 2 3 28 28 H 1.09006 * 109.46631 * 178.85924 * 3 2 1 29 29 H 1.08994 * 109.47709 * 298.86099 * 3 2 1 30 30 H 1.09007 * 109.46928 * 58.86199 * 3 2 1 31 31 H 1.08999 * 110.97603 * 278.00008 * 5 4 2 32 32 H 1.08993 * 111.01191 * 154.22362 * 5 4 2 33 33 H 1.09003 * 109.47202 * 65.00868 * 8 6 5 34 34 H 1.08995 * 109.47668 * 304.99895 * 8 6 5 35 35 H 1.08996 * 109.47069 * 65.22605 * 9 8 6 36 36 H 1.09003 * 109.47111 * 305.22714 * 9 8 6 37 37 H 1.08999 * 109.46993 * 50.00072 * 11 10 9 38 38 H 1.09002 * 109.47050 * 290.00307 * 11 10 9 39 39 H 0.96995 * 120.00306 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.47213 * 47.60437 * 20 10 9 41 41 H 1.09002 * 109.46608 * 167.60007 * 20 10 9 42 42 H 1.09005 * 115.54757 * 31.21925 * 21 20 10 43 43 H 1.08998 * 117.50176 * 359.97438 * 22 21 20 44 44 H 1.09004 * 117.49605 * 145.01808 * 22 21 20 45 45 H 1.09003 * 117.49820 * 214.97564 * 23 21 20 46 46 H 1.08998 * 117.50037 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 8 2.0130 -0.6834 1.1688 5 6 2.2653 -2.0391 0.7273 6 6 2.7886 -1.8087 -0.7126 7 1 3.8516 -1.5680 -0.7021 8 6 2.5225 -3.0355 -1.5872 9 6 3.1587 -2.8285 -2.9632 10 7 2.7982 -3.9484 -3.8429 11 6 3.5794 -5.1483 -3.5145 12 6 3.0189 -6.3321 -4.2597 13 1 2.1671 -6.2059 -4.9116 14 6 3.5965 -7.5754 -4.1131 15 7 3.1106 -8.6076 -4.7675 16 14 5.0691 -7.7940 -2.9849 17 1 4.5990 -8.1255 -1.6158 18 1 5.9243 -8.8958 -3.4949 19 1 5.8549 -6.5345 -2.9470 20 6 2.9642 -3.5824 -5.2559 21 6 1.8559 -2.6101 -5.6646 22 6 0.8415 -3.0917 -6.7038 23 6 1.8962 -2.0510 -7.0881 24 8 2.0118 -0.6816 -1.1656 25 1 -0.3634 0.5314 0.8796 26 1 -0.3633 0.4960 -0.9001 27 1 -0.3633 -1.0275 0.0203 28 1 3.1307 1.4416 0.0205 29 1 1.6946 1.9504 -0.8999 30 1 1.6612 1.9621 0.8797 31 1 1.3458 -2.6243 0.7193 32 1 3.0243 -2.5169 1.3466 33 1 1.4474 -3.1741 -1.7012 34 1 2.9548 -3.9183 -1.1162 35 1 4.2428 -2.7825 -2.8590 36 1 2.7954 -1.8959 -3.3949 37 1 3.5250 -5.3351 -2.4420 38 1 4.6191 -4.9956 -3.8044 39 1 3.5172 -9.4822 -4.6647 40 1 3.9349 -3.1068 -5.3964 41 1 2.9065 -4.4793 -5.8726 42 1 1.4936 -1.9515 -4.8751 43 1 0.9640 -4.1010 -7.0966 44 1 -0.1881 -2.7496 -6.5983 45 1 1.5600 -1.0246 -7.2353 46 1 2.7125 -2.3754 -7.7333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851799197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:28 Heat of formation + Delta-G solvation = -68.038888 kcal Electronic energy + Delta-G solvation = -23322.892712 eV Core-core repulsion = 20020.389547 eV Total energy + Delta-G solvation = -3302.503165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.67307 -37.91744 -35.93449 -35.02210 -33.69841 -32.45400 -30.93150 -28.26090 -27.71737 -27.40589 -24.94768 -22.89947 -21.97724 -21.46517 -21.19020 -20.42834 -19.42437 -17.50696 -16.85626 -16.43009 -15.72662 -15.30995 -14.92112 -14.53976 -14.35055 -14.09933 -13.77852 -13.53981 -13.30694 -13.17170 -12.65122 -12.61862 -12.49326 -12.31848 -12.26931 -12.14247 -11.88555 -11.77912 -11.58632 -11.15149 -10.96255 -10.82646 -10.59691 -10.47788 -10.26149 -10.13235 -9.84951 -9.81251 -9.66604 -9.41693 -9.23930 -8.57296 -7.34422 -6.05920 -4.02875 3.25966 3.30562 3.34157 3.35456 3.85941 4.17571 4.39485 4.40926 4.65397 4.74385 4.78434 4.92963 5.07590 5.23507 5.25498 5.30238 5.37082 5.37980 5.39813 5.41650 5.50758 5.53972 5.64653 5.67548 5.85143 5.86722 5.92394 5.93375 5.99008 6.01924 6.07844 6.20326 6.31949 6.35845 6.41092 6.52240 6.54972 6.78743 6.93337 6.98560 7.08861 7.60558 7.94632 8.08006 8.66453 9.03899 9.56098 11.07218 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.004871 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.848119 B = 5746.703334 C = 7307.710215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.248 3.752 3 C -0.153 4.153 4 O -0.378 6.378 5 C 0.020 3.980 6 C 0.055 3.945 7 H 0.082 0.918 8 C -0.111 4.111 9 C 0.056 3.944 10 N -0.524 5.524 11 C 0.161 3.839 12 C -0.508 4.508 13 H 0.082 0.918 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.872 3.128 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.092 3.908 21 C -0.136 4.136 22 C -0.173 4.173 23 C -0.191 4.191 24 O -0.370 6.370 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.023 0.977 36 H 0.071 0.929 37 H 0.025 0.975 38 H -0.013 1.013 39 H 0.263 0.737 40 H 0.022 0.978 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 17.528 7.456 19.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.171 3.829 3 C -0.210 4.210 4 O -0.298 6.298 5 C -0.056 4.056 6 C -0.003 4.003 7 H 0.100 0.900 8 C -0.149 4.149 9 C -0.073 4.073 10 N -0.248 5.248 11 C 0.035 3.965 12 C -0.546 4.546 13 H 0.100 0.900 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.699 3.301 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.036 4.036 21 C -0.154 4.154 22 C -0.210 4.210 23 C -0.229 4.229 24 O -0.291 6.291 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.041 0.959 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.004 0.996 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.603 17.366 7.501 19.095 hybrid contribution 1.629 -0.258 0.521 1.730 sum -0.974 17.107 8.022 18.920 Atomic orbital electron populations 1.22366 0.94050 1.03416 1.02968 1.23340 0.92907 0.91357 0.75282 1.22062 1.02362 0.93671 1.02938 1.89212 1.86073 1.22223 1.32338 1.24440 1.01742 0.84574 0.94840 1.23827 0.96036 0.87276 0.93169 0.89988 1.21689 1.03431 0.94492 0.95255 1.22026 0.96641 0.95381 0.93203 1.61833 1.57275 1.03698 1.01944 1.20205 0.91037 0.88693 0.96597 1.21053 1.15903 0.90672 1.26989 0.90034 1.24894 0.96829 0.95912 0.95638 1.69892 1.41426 1.00123 1.42494 0.86911 0.83560 0.78037 0.81542 1.20164 1.21229 1.19305 1.21589 0.93632 0.97820 0.90595 1.22325 1.00334 1.01308 0.91460 1.22951 0.94865 0.99222 1.04009 1.22939 1.02465 0.98293 0.99189 1.88935 1.69503 1.41804 1.28880 0.91005 0.90757 0.91685 0.91598 0.90537 0.91009 0.90325 0.87458 0.89919 0.90191 0.95924 0.91077 0.95735 0.99567 0.92697 0.95988 0.88971 0.88091 0.88537 0.89572 0.89568 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.19 37.16 0.34 -1.41 16 2 C 0.25 2.94 1.47 -26.73 -0.04 2.90 16 3 C -0.15 -1.50 9.24 37.16 0.34 -1.15 16 4 O -0.38 -4.77 11.01 -59.04 -0.65 -5.42 16 5 C 0.02 0.23 7.36 38.17 0.28 0.52 16 6 C 0.05 0.71 3.64 -25.72 -0.09 0.61 16 7 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 8 C -0.11 -1.66 5.01 -26.73 -0.13 -1.80 16 9 C 0.06 0.95 4.76 -3.82 -0.02 0.94 16 10 N -0.52 -10.75 4.38 -236.07 -1.03 -11.78 16 11 C 0.16 3.81 3.61 -4.98 -0.02 3.80 16 12 C -0.51 -14.16 8.83 -34.44 -0.30 -14.46 16 13 H 0.08 2.49 7.51 -52.49 -0.39 2.09 16 14 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 16 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 20 C 0.09 1.77 5.08 -3.82 -0.02 1.75 16 21 C -0.14 -2.23 5.58 -90.62 -0.51 -2.74 16 22 C -0.17 -2.69 10.18 -26.69 -0.27 -2.97 16 23 C -0.19 -2.69 10.25 -26.70 -0.27 -2.96 16 24 O -0.37 -5.08 10.36 -59.04 -0.61 -5.69 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 32 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.22 6.98 -51.93 -0.36 0.86 16 35 H 0.02 0.39 7.99 -51.93 -0.42 -0.03 16 36 H 0.07 1.17 6.31 -51.93 -0.33 0.84 16 37 H 0.02 0.57 6.18 -51.93 -0.32 0.25 16 38 H -0.01 -0.32 7.17 -51.93 -0.37 -0.70 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 40 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 41 H 0.09 2.03 6.33 -51.93 -0.33 1.70 16 42 H 0.10 1.65 6.90 -51.93 -0.36 1.30 16 43 H 0.10 1.61 8.04 -51.93 -0.42 1.20 16 44 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -30.36 363.10 -9.90 -40.26 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.37 Total: 2.29 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -0.81 Total: -15.12 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.26 Total: -38.29 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -1.26 Total: -11.11 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.36 -9.90 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851799197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.779 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds