Wall clock time and date at job start Tue Mar 31 2020 05:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.62858 * 2 1 4 4 O 1.43755 * 109.63392 * 120.39223 * 2 1 3 5 5 C 1.44782 * 104.81523 * 95.56426 * 4 2 1 6 6 C 1.54917 * 101.72140 * 36.10629 * 5 4 2 7 7 H 1.09001 * 110.69620 * 83.00359 * 6 5 4 8 8 C 1.53004 * 110.69519 * 206.04403 * 6 5 4 9 9 C 1.53000 * 109.46788 * 182.62162 * 8 6 5 10 10 N 1.46905 * 109.46963 * 179.97438 * 9 8 6 11 11 C 1.46843 * 110.99786 * 66.04435 * 10 9 8 12 12 C 1.53037 * 109.52078 * 185.83787 * 11 10 9 13 13 C 1.53119 * 109.28161 * 300.82619 * 12 11 10 14 14 C 1.53120 * 109.16285 * 57.65004 * 13 12 11 15 15 H 1.09004 * 109.50098 * 62.33034 * 14 13 12 16 16 C 1.50698 * 109.50163 * 182.40573 * 14 13 12 17 17 H 1.08003 * 119.99615 * 114.44571 * 16 14 13 18 18 C 1.37881 * 120.00264 * 294.43763 * 16 14 13 19 19 N 1.31513 * 119.99661 * 161.77318 * 18 16 14 20 20 Si 1.86799 * 120.00058 * 341.77563 * 18 16 14 21 21 H 1.48494 * 109.47450 * 179.97438 * 20 18 16 22 22 H 1.48504 * 109.47012 * 59.99677 * 20 18 16 23 23 H 1.48496 * 109.47085 * 300.00006 * 20 18 16 24 24 C 1.46843 * 110.99866 * 190.25954 * 10 9 8 25 25 O 1.43641 * 109.73328 * 239.85718 * 2 1 3 26 26 H 1.09004 * 109.47034 * 301.06023 * 1 2 3 27 27 H 1.08998 * 109.47675 * 61.05674 * 1 2 3 28 28 H 1.09004 * 109.47355 * 181.06344 * 1 2 3 29 29 H 1.08994 * 109.47340 * 178.93831 * 3 2 1 30 30 H 1.09007 * 109.46978 * 298.94212 * 3 2 1 31 31 H 1.09002 * 109.46895 * 58.93788 * 3 2 1 32 32 H 1.09004 * 110.98011 * 277.99864 * 5 4 2 33 33 H 1.08998 * 110.97998 * 154.21382 * 5 4 2 34 34 H 1.08998 * 109.47327 * 62.62055 * 8 6 5 35 35 H 1.08999 * 109.46951 * 302.61827 * 8 6 5 36 36 H 1.08998 * 109.47274 * 59.99861 * 9 8 6 37 37 H 1.08999 * 109.47101 * 299.99574 * 9 8 6 38 38 H 1.08997 * 109.46377 * 65.83051 * 11 10 9 39 39 H 1.08991 * 109.46449 * 305.85562 * 11 10 9 40 40 H 1.08995 * 109.50666 * 180.87665 * 12 11 10 41 41 H 1.09008 * 109.50345 * 60.76541 * 12 11 10 42 42 H 1.09000 * 109.51886 * 297.74548 * 13 12 11 43 43 H 1.09002 * 109.52244 * 177.55972 * 13 12 11 44 44 H 0.96994 * 120.00165 * 354.68551 * 19 18 16 45 45 H 1.09002 * 109.46873 * 54.14317 * 24 10 9 46 46 H 1.09006 * 109.46135 * 294.16985 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 8 2.0130 -0.6850 1.1679 5 6 2.2652 -2.0400 0.7246 6 6 2.7885 -1.8079 -0.7150 7 1 3.8515 -1.5671 -0.7043 8 6 2.5222 -3.0335 -1.5913 9 6 3.1071 -2.8001 -2.9857 10 7 2.8520 -3.9771 -3.8270 11 6 1.4144 -4.1452 -4.0747 12 6 1.1751 -5.4556 -4.8281 13 6 1.9402 -5.4235 -6.1540 14 6 3.4281 -5.1990 -5.8703 15 1 3.8164 -6.0317 -5.2838 16 6 4.1803 -5.1071 -7.1729 17 1 4.6557 -4.1801 -7.4577 18 6 4.2617 -6.2065 -8.0011 19 7 4.5886 -6.0542 -9.2658 20 14 3.9077 -7.9121 -7.3267 21 1 4.0620 -8.9150 -8.4109 22 1 2.5187 -7.9591 -6.8035 23 1 4.8604 -8.2181 -6.2295 24 6 3.6021 -3.8960 -5.0867 25 8 2.0149 -0.6789 -1.1692 26 1 -0.3633 0.5302 0.8804 27 1 -0.3634 0.4973 -0.8993 28 1 -0.3634 -1.0275 0.0191 29 1 3.1337 1.4382 0.0190 30 1 1.6975 1.9504 -0.8994 31 1 1.6665 1.9614 0.8803 32 1 1.3457 -2.6253 0.7159 33 1 3.0245 -2.5181 1.3434 34 1 1.4475 -3.1968 -1.6707 35 1 2.9907 -3.9095 -1.1428 36 1 4.1818 -2.6368 -2.9063 37 1 2.6386 -1.9241 -3.4342 38 1 1.0489 -3.3105 -4.6729 39 1 0.8825 -4.1707 -3.1237 40 1 0.1095 -5.5726 -5.0255 41 1 1.5278 -6.2920 -4.2245 42 1 1.5609 -4.6111 -6.7738 43 1 1.8076 -6.3722 -6.6741 44 1 4.6970 -5.1638 -9.6349 45 1 4.6591 -3.7405 -4.8708 46 1 3.2263 -3.0625 -5.6802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852320069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:22 Heat of formation + Delta-G solvation = -104.985341 kcal Electronic energy + Delta-G solvation = -23335.895467 eV Core-core repulsion = 20031.790184 eV Total energy + Delta-G solvation = -3304.105283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85135 -38.48676 -35.56064 -34.59471 -33.35393 -32.18364 -30.62897 -30.08903 -27.83292 -27.36453 -24.65008 -24.05779 -22.06630 -21.67037 -21.37619 -20.28617 -18.71227 -17.73967 -17.43720 -16.61928 -15.81797 -15.13134 -15.00948 -14.75841 -14.20325 -14.05392 -13.73304 -13.59943 -13.36220 -13.19583 -12.88569 -12.66163 -12.57854 -12.43428 -12.36954 -12.21729 -12.07591 -11.97304 -11.60730 -11.28510 -11.09657 -10.77647 -10.52184 -10.49407 -10.37539 -10.02407 -9.88420 -9.79500 -9.56491 -9.20283 -8.67982 -8.20681 -7.79762 -6.39801 -4.01497 3.12414 3.44037 3.49117 3.67235 3.68546 4.08302 4.42682 4.55802 4.56082 4.57651 4.71061 4.91721 5.03745 5.10244 5.20626 5.26561 5.28614 5.38407 5.40778 5.43431 5.51822 5.56458 5.62598 5.67687 5.78187 5.81339 5.88643 5.89682 6.01695 6.11101 6.18713 6.24680 6.35325 6.43058 6.54709 6.70693 6.89037 6.89815 6.98405 7.34445 7.51093 7.65640 7.69959 8.25487 8.42262 8.94278 9.65687 10.97988 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.035879 B = 0.003266 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.218072 B = 8571.299961 C = 8706.721467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.248 3.752 3 C -0.154 4.154 4 O -0.376 6.376 5 C 0.022 3.978 6 C 0.053 3.947 7 H 0.086 0.914 8 C -0.113 4.113 9 C 0.059 3.941 10 N -0.542 5.542 11 C 0.061 3.939 12 C -0.120 4.120 13 C -0.124 4.124 14 C 0.027 3.973 15 H 0.029 0.971 16 C -0.599 4.599 17 H 0.053 0.947 18 C 0.033 3.967 19 N -0.909 5.909 20 Si 1.043 2.957 21 H -0.289 1.289 22 H -0.273 1.273 23 H -0.283 1.283 24 C 0.078 3.922 25 O -0.371 6.371 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.025 0.975 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.060 0.940 44 H 0.267 0.733 45 H 0.063 0.937 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.765 9.792 20.690 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.171 3.829 3 C -0.211 4.211 4 O -0.296 6.296 5 C -0.055 4.055 6 C -0.005 4.005 7 H 0.104 0.896 8 C -0.151 4.151 9 C -0.070 4.070 10 N -0.267 5.267 11 C -0.067 4.067 12 C -0.158 4.158 13 C -0.162 4.162 14 C 0.008 3.992 15 H 0.047 0.953 16 C -0.637 4.637 17 H 0.072 0.928 18 C -0.171 4.171 19 N -0.542 5.542 20 Si 0.872 3.128 21 H -0.215 1.215 22 H -0.199 1.199 23 H -0.210 1.210 24 C -0.049 4.049 25 O -0.293 6.293 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -7.611 7.943 20.516 23.279 hybrid contribution -0.277 2.344 -0.074 2.361 sum -7.888 10.286 20.442 24.205 Atomic orbital electron populations 1.22357 0.93951 1.03275 1.03179 1.23418 0.92894 0.91488 0.75113 1.22064 1.02474 0.93494 1.03063 1.89231 1.86063 1.22090 1.32245 1.24420 1.01561 0.84766 0.94741 1.23820 0.96488 0.87110 0.93063 0.89590 1.21746 1.02444 0.95375 0.95523 1.21968 1.00371 0.92116 0.92505 1.62043 1.08156 1.38193 1.18299 1.22029 0.88656 0.97458 0.98526 1.21675 0.98976 0.96885 0.98233 1.22115 0.98086 1.01476 0.94560 1.18988 0.92087 0.92922 0.95210 0.95305 1.21975 1.37253 1.00225 1.04283 0.92848 1.25743 0.93712 1.03740 0.93928 1.70841 1.44682 1.26151 1.12561 0.84094 0.77233 0.76001 0.75522 1.21498 1.19938 1.20978 1.22102 0.96434 0.99177 0.87216 1.89019 1.69591 1.41743 1.28923 0.90815 0.90694 0.91855 0.91460 0.90461 0.90904 0.90574 0.87311 0.90945 0.89405 0.91174 0.94729 0.95670 0.91944 0.93019 0.91962 0.93399 0.92122 0.92339 0.91893 0.96031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 9.20 37.16 0.34 -1.17 16 2 C 0.25 2.59 1.47 -26.73 -0.04 2.55 16 3 C -0.15 -1.36 9.23 37.16 0.34 -1.02 16 4 O -0.38 -4.09 11.01 -59.01 -0.65 -4.74 16 5 C 0.02 0.19 7.36 38.17 0.28 0.48 16 6 C 0.05 0.56 3.65 -25.72 -0.09 0.47 16 7 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 8 C -0.11 -1.30 4.91 -26.73 -0.13 -1.43 16 9 C 0.06 0.86 4.89 -3.82 -0.02 0.84 16 10 N -0.54 -9.56 4.65 -234.68 -1.09 -10.65 16 11 C 0.06 1.02 5.29 -3.84 -0.02 1.00 16 12 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 13 C -0.12 -2.75 4.96 -26.61 -0.13 -2.88 16 14 C 0.03 0.66 1.84 -91.69 -0.17 0.49 16 15 H 0.03 0.71 6.79 -51.93 -0.35 0.36 16 16 C -0.60 -16.97 8.82 -34.44 -0.30 -17.28 16 17 H 0.05 1.63 7.99 -52.48 -0.42 1.21 16 18 C 0.03 0.97 5.34 -17.82 -0.10 0.88 16 19 N -0.91 -28.15 13.70 55.43 0.76 -27.39 16 20 Si 1.04 25.46 26.42 -169.99 -4.49 20.97 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.27 -6.14 5.57 56.52 0.32 -5.83 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.08 1.64 4.68 -3.84 -0.02 1.62 16 25 O -0.37 -4.55 10.36 -59.01 -0.61 -5.16 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 33 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.01 7.98 -51.93 -0.41 0.59 16 37 H 0.03 0.54 7.97 -51.93 -0.41 0.13 16 38 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.89 6.22 -51.93 -0.32 0.57 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.40 4.86 -51.93 -0.25 1.15 16 44 H 0.27 8.24 8.73 -40.82 -0.36 7.88 16 45 H 0.06 1.33 8.01 -51.93 -0.42 0.91 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -31.08 350.71 -9.52 -40.59 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -8.50 Total: -1.14 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -0.22 Total: -17.76 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.33 Total: -38.04 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -1.26 Total: -9.90 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -4.49 Total: 20.97 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.08 -9.52 -40.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852320069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.391 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds