Wall clock time and date at job start Tue Mar 31 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.62930 * 2 1 4 4 O 1.43375 * 109.62926 * 120.38986 * 2 1 3 5 5 C 1.44194 * 107.28552 * 119.21154 * 4 2 1 6 6 C 1.54916 * 103.07570 * 338.56386 * 5 4 2 7 7 H 1.08999 * 110.97726 * 277.45022 * 6 5 4 8 8 C 1.53007 * 111.00838 * 153.68724 * 6 5 4 9 9 C 1.53006 * 109.46786 * 181.18989 * 8 6 5 10 10 N 1.46897 * 109.46665 * 179.97438 * 9 8 6 11 11 C 1.46857 * 111.00027 * 45.79639 * 10 9 8 12 12 C 1.53035 * 109.52251 * 185.83554 * 11 10 9 13 13 C 1.53117 * 109.28146 * 300.81878 * 12 11 10 14 14 C 1.53119 * 109.15990 * 57.65277 * 13 12 11 15 15 H 1.09000 * 109.53376 * 62.30863 * 14 13 12 16 16 C 1.50700 * 109.50350 * 182.40994 * 14 13 12 17 17 H 1.08000 * 120.00419 * 119.80675 * 16 14 13 18 18 C 1.37885 * 119.99679 * 299.80474 * 16 14 13 19 19 N 1.31513 * 120.00174 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99955 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46955 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46958 * 119.99607 * 20 18 16 23 23 H 1.48497 * 109.46910 * 239.99963 * 20 18 16 24 24 C 1.46846 * 110.99778 * 169.99661 * 10 9 8 25 25 O 1.43748 * 109.63136 * 239.75529 * 2 1 3 26 26 H 1.08998 * 109.47026 * 301.06456 * 1 2 3 27 27 H 1.09001 * 109.46793 * 61.06297 * 1 2 3 28 28 H 1.09001 * 109.47178 * 181.06436 * 1 2 3 29 29 H 1.08996 * 109.46923 * 178.93634 * 3 2 1 30 30 H 1.09001 * 109.46793 * 298.94270 * 3 2 1 31 31 H 1.09002 * 109.47294 * 58.93562 * 3 2 1 32 32 H 1.08996 * 110.69608 * 96.96176 * 5 4 2 33 33 H 1.09001 * 110.69660 * 220.16696 * 5 4 2 34 34 H 1.08993 * 109.46633 * 301.19064 * 8 6 5 35 35 H 1.08996 * 109.47407 * 61.19108 * 8 6 5 36 36 H 1.08993 * 109.46877 * 299.99690 * 9 8 6 37 37 H 1.08996 * 109.47050 * 59.99901 * 9 8 6 38 38 H 1.09004 * 109.45582 * 305.84906 * 11 10 9 39 39 H 1.08996 * 109.46198 * 65.81415 * 11 10 9 40 40 H 1.09003 * 109.50347 * 180.87400 * 12 11 10 41 41 H 1.09008 * 109.53604 * 60.77835 * 12 11 10 42 42 H 1.09007 * 109.51764 * 297.75429 * 13 12 11 43 43 H 1.08997 * 109.52397 * 177.56275 * 13 12 11 44 44 H 0.96997 * 120.00017 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.46583 * 294.18074 * 24 10 9 46 46 H 1.09002 * 109.46041 * 54.16336 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 8 2.0117 -0.6832 1.1649 5 6 2.7885 -1.8097 0.7104 6 6 2.2652 -2.0381 -0.7298 7 1 1.3458 -2.6234 -0.7226 8 6 3.3304 -2.7073 -1.6007 9 6 2.7883 -2.8889 -3.0200 10 7 3.8112 -3.5309 -3.8563 11 6 4.4200 -4.6718 -3.1603 12 6 5.5760 -5.2239 -3.9976 13 6 5.0456 -5.6608 -5.3659 14 6 4.3739 -4.4665 -6.0492 15 1 5.1101 -3.6800 -6.2149 16 6 3.7969 -4.9024 -7.3714 17 1 2.7365 -4.8106 -7.5545 18 6 4.6229 -5.4184 -8.3474 19 7 5.9143 -5.5297 -8.1247 20 14 3.9080 -5.9582 -9.9866 21 1 2.4407 -5.7291 -9.9861 22 1 4.5308 -5.1715 -11.0813 23 1 4.1840 -7.4022 -10.1956 24 6 3.2527 -3.9363 -5.1525 25 8 2.0130 -0.6820 -1.1696 26 1 -0.3633 0.5303 0.8803 27 1 -0.3633 0.4972 -0.8994 28 1 -0.3633 -1.0275 0.0191 29 1 3.1338 1.4381 0.0191 30 1 1.6976 1.9503 -0.8993 31 1 1.6666 1.9615 0.8803 32 1 3.8508 -1.5661 0.7001 33 1 2.5988 -2.6845 1.3323 34 1 4.2220 -2.0811 -1.6296 35 1 3.5837 -3.6809 -1.1812 36 1 1.8968 -3.5151 -2.9910 37 1 2.5351 -1.9153 -3.4395 38 1 4.7969 -4.3465 -2.1906 39 1 3.6714 -5.4508 -3.0162 40 1 6.0177 -6.0804 -3.4881 41 1 6.3320 -4.4500 -4.1305 42 1 4.3184 -6.4623 -5.2356 43 1 5.8729 -6.0146 -5.9812 44 1 6.4953 -5.8931 -8.8111 45 1 2.5096 -4.7188 -4.9990 46 1 2.7819 -3.0769 -5.6299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852320070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:25 Heat of formation + Delta-G solvation = -101.799475 kcal Electronic energy + Delta-G solvation = -23220.453015 eV Core-core repulsion = 19916.485881 eV Total energy + Delta-G solvation = -3303.967134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.81328 -38.36754 -35.46063 -34.55866 -33.30760 -31.94480 -30.54223 -29.68495 -27.70572 -27.26510 -24.99523 -23.96028 -22.06135 -21.76446 -21.28903 -20.22621 -18.61277 -17.63747 -16.57212 -16.33880 -15.67749 -15.22086 -14.91638 -14.47654 -14.43091 -14.02162 -13.84279 -13.53412 -13.24449 -12.86577 -12.79846 -12.57151 -12.44351 -12.37439 -12.31668 -12.21587 -11.93946 -11.60790 -11.42757 -11.04957 -10.96457 -10.93672 -10.57369 -10.51522 -10.29893 -10.02345 -9.84726 -9.80019 -9.43978 -8.99292 -8.66865 -8.28249 -7.61970 -5.95479 -4.01383 3.16498 3.31147 3.39143 3.42961 3.73651 4.13717 4.43977 4.54639 4.59350 4.65888 4.76500 4.94024 5.06995 5.17282 5.26520 5.31887 5.34659 5.44831 5.47094 5.47774 5.58304 5.67348 5.70904 5.78832 5.83819 5.84930 5.94023 6.07954 6.19367 6.23951 6.31543 6.45012 6.54620 6.73250 6.77449 6.94268 7.00261 7.24175 7.42477 7.69440 7.77919 7.85742 8.11469 8.19875 8.50829 9.02974 9.62790 11.10604 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.031801 B = 0.003152 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.254272 B = 8879.715212 C = 9400.046944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.248 3.752 3 C -0.154 4.154 4 O -0.383 6.383 5 C 0.026 3.974 6 C 0.050 3.950 7 H 0.082 0.918 8 C -0.115 4.115 9 C 0.060 3.940 10 N -0.538 5.538 11 C 0.056 3.944 12 C -0.118 4.118 13 C -0.111 4.111 14 C 0.054 3.946 15 H 0.034 0.966 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.068 3.932 25 O -0.362 6.362 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.025 0.975 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.021 0.979 40 H 0.045 0.955 41 H 0.060 0.940 42 H 0.029 0.971 43 H 0.090 0.910 44 H 0.259 0.741 45 H 0.018 0.982 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.877 7.833 18.156 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.171 3.829 3 C -0.211 4.211 4 O -0.304 6.304 5 C -0.051 4.051 6 C -0.008 4.008 7 H 0.100 0.900 8 C -0.152 4.152 9 C -0.068 4.068 10 N -0.263 5.263 11 C -0.072 4.072 12 C -0.156 4.156 13 C -0.149 4.149 14 C 0.036 3.964 15 H 0.053 0.947 16 C -0.552 4.552 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.058 4.058 25 O -0.283 6.283 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.043 0.957 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.109 0.891 44 H 0.069 0.931 45 H 0.036 0.964 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.366 8.280 17.965 20.780 hybrid contribution -1.069 -1.105 -0.758 1.714 sum -7.435 7.175 17.206 20.070 Atomic orbital electron populations 1.22368 0.93982 1.03228 1.03200 1.23372 0.92865 0.91546 0.75135 1.22060 1.02537 0.93458 1.03036 1.88863 1.69604 1.42144 1.29824 1.24230 0.96682 0.89464 0.94693 1.23994 0.99094 0.84609 0.93103 0.90004 1.21797 0.97617 1.00606 0.95185 1.22014 0.93090 0.99784 0.91952 1.62095 1.31353 1.28628 1.04202 1.22150 0.96865 0.91338 0.96822 1.21681 0.96910 0.99055 0.97928 1.21649 1.01312 0.98909 0.92991 1.18669 0.92431 0.93789 0.91558 0.94745 1.21199 0.94041 1.41472 0.98537 0.92820 1.24940 0.94823 0.95776 0.98354 1.69903 1.03153 1.45925 1.33751 0.86576 0.79275 0.78206 0.84157 1.19867 1.21040 1.21124 1.22305 0.97884 0.97718 0.87941 1.89334 1.85786 1.21750 1.31404 0.90948 0.90515 0.91920 0.91411 0.90607 0.90762 0.90368 0.88403 0.89827 0.89834 0.95718 0.90457 0.91959 0.96074 0.93627 0.92096 0.95236 0.89149 0.93142 0.96373 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 9.20 37.16 0.34 -1.21 16 2 C 0.25 2.69 1.47 -26.73 -0.04 2.65 16 3 C -0.15 -1.43 9.24 37.16 0.34 -1.08 16 4 O -0.38 -4.36 10.87 -59.04 -0.64 -5.00 16 5 C 0.03 0.25 7.54 38.17 0.29 0.54 16 6 C 0.05 0.55 3.48 -25.72 -0.09 0.46 16 7 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 8 C -0.11 -1.38 4.26 -26.72 -0.11 -1.50 16 9 C 0.06 0.92 5.19 -3.82 -0.02 0.90 16 10 N -0.54 -10.03 4.81 -234.67 -1.13 -11.16 16 11 C 0.06 0.97 4.85 -3.83 -0.02 0.95 16 12 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 13 C -0.11 -2.63 5.03 -26.61 -0.13 -2.77 16 14 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 15 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.51 -14.23 8.56 -34.44 -0.29 -14.53 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.50 11.36 55.43 0.63 -24.87 16 20 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.07 1.49 4.65 -3.83 -0.02 1.47 16 25 O -0.36 -4.59 10.41 -59.04 -0.61 -5.21 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 0.91 6.21 -51.93 -0.32 0.58 16 36 H 0.02 0.37 8.08 -51.93 -0.42 -0.04 16 37 H 0.08 1.25 7.94 -51.93 -0.41 0.84 16 38 H 0.06 0.90 5.81 -51.93 -0.30 0.60 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -29.58 353.98 -10.16 -39.74 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -8.50 Total: -1.42 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -0.22 Total: -13.78 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.50 Total: -36.03 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -1.26 Total: -10.21 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.58 -10.16 -39.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852320070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.059 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds