Wall clock time and date at job start Tue Mar 31 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47003 * 2 1 4 4 C 1.53001 * 109.47003 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47188 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47188 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.46891 * 305.00042 * 6 5 4 8 8 O 1.42904 * 109.47042 * 64.99922 * 6 5 4 9 9 C 1.50700 * 109.47125 * 184.99927 * 6 5 4 10 10 O 1.21275 * 120.00040 * 244.99732 * 9 6 5 11 11 N 1.34773 * 119.99759 * 65.00203 * 9 6 5 12 12 C 1.46927 * 120.63531 * 359.97438 * 11 9 6 13 13 C 1.53189 * 108.77735 * 126.41336 * 12 11 9 14 14 C 1.53046 * 109.33673 * 54.62021 * 13 12 11 15 15 C 1.53035 * 109.53875 * 298.68326 * 14 13 12 16 16 H 1.08996 * 109.49890 * 301.34518 * 15 14 13 17 17 C 1.50702 * 109.49706 * 181.28526 * 15 14 13 18 18 H 1.08002 * 120.00299 * 240.06884 * 17 15 14 19 19 C 1.37884 * 119.99942 * 59.78443 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.46932 * 120.62865 * 180.02562 * 11 9 6 26 26 H 1.09004 * 109.46677 * 59.99846 * 1 2 3 27 27 H 1.08992 * 109.46893 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47005 * 300.00074 * 1 2 3 29 29 H 1.09006 * 109.47152 * 240.00513 * 2 1 3 30 30 H 1.08993 * 109.47183 * 120.00226 * 2 1 3 31 31 H 1.08998 * 109.46966 * 60.00531 * 3 2 1 32 32 H 1.08993 * 109.47335 * 300.00132 * 3 2 1 33 33 H 1.09005 * 109.47331 * 59.99994 * 4 3 2 34 34 H 1.09003 * 109.47159 * 300.00374 * 4 3 2 35 35 H 1.08998 * 109.47089 * 60.00342 * 5 4 3 36 36 H 1.08993 * 109.47027 * 300.00056 * 5 4 3 37 37 H 0.96697 * 113.99985 * 60.00273 * 8 6 5 38 38 H 1.09006 * 109.58464 * 246.20279 * 12 11 9 39 39 H 1.08994 * 109.58189 * 6.62736 * 12 11 9 40 40 H 1.08997 * 109.49675 * 174.58719 * 13 12 11 41 41 H 1.08997 * 109.49952 * 294.68592 * 13 12 11 42 42 H 1.09004 * 109.48171 * 178.64655 * 14 13 12 43 43 H 1.09000 * 109.42893 * 58.69193 * 14 13 12 44 44 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.58748 * 113.79650 * 25 11 9 46 46 H 1.09001 * 109.58381 * 353.36707 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6100 2.8850 0.0026 7 1 5.9726 2.2954 0.8447 8 8 6.0874 2.3158 -1.2182 9 6 6.1123 4.3004 0.1270 10 8 6.7337 4.8056 -0.7837 11 7 5.8709 5.0047 1.2504 12 6 5.1191 4.4065 2.3621 13 6 5.9452 4.5415 3.6451 14 6 6.3167 6.0111 3.8564 15 6 7.1663 6.4984 2.6805 16 1 8.0639 5.8851 2.6014 17 6 7.5580 7.9363 2.9048 18 1 7.2592 8.6943 2.1958 19 6 8.2929 8.2850 4.0181 20 7 8.6568 7.3620 4.8814 21 14 8.7717 10.0684 4.3000 22 1 8.2437 10.9039 3.1917 23 1 8.2000 10.5368 5.5881 24 1 10.2517 10.1825 4.3447 25 6 6.3536 6.3858 1.3864 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9338 0.9286 -0.8891 34 1 3.9330 0.9288 0.8908 35 1 3.7164 3.3986 0.8913 36 1 3.7171 3.3991 -0.8886 37 1 5.8028 2.7903 -2.0112 38 1 4.1691 4.9272 2.4827 39 1 4.9367 3.3523 2.1543 40 1 5.3593 4.1887 4.4938 41 1 6.8539 3.9461 3.5571 42 1 6.8842 6.1133 4.7814 43 1 5.4077 6.6093 3.9202 44 1 9.1741 7.6073 5.6644 45 1 5.5040 7.0674 1.4276 46 1 6.9857 6.6374 0.5347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855253229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:57 Heat of formation + Delta-G solvation = -122.120490 kcal Electronic energy + Delta-G solvation = -23220.542916 eV Core-core repulsion = 19915.694597 eV Total energy + Delta-G solvation = -3304.848319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.12523 -37.50999 -36.66305 -35.61259 -33.71539 -32.45722 -31.35223 -30.37762 -28.51672 -25.54703 -25.12134 -23.74255 -21.85026 -21.62401 -21.23131 -20.04886 -18.59286 -17.35448 -16.63868 -16.39607 -15.86250 -15.41368 -14.79951 -14.67403 -14.28458 -13.97458 -13.63670 -13.55625 -13.45024 -13.32462 -12.80318 -12.68345 -12.26226 -12.19297 -12.07556 -11.93476 -11.58654 -11.29898 -11.12062 -11.07101 -11.02490 -10.84283 -10.74272 -10.66035 -10.55394 -10.30287 -9.97129 -9.82078 -9.49051 -9.11444 -8.81961 -8.41964 -7.96159 -6.04605 -4.11723 2.90465 3.27028 3.35074 3.38125 3.44782 4.24736 4.40257 4.48605 4.66392 4.71598 4.78877 4.88919 4.98693 5.20151 5.23147 5.26583 5.28853 5.43345 5.53377 5.55019 5.55883 5.65416 5.71192 5.76487 5.83826 5.85090 5.99298 6.04628 6.12187 6.19758 6.28508 6.34203 6.43306 6.61333 6.75508 6.90597 7.11909 7.28509 7.52582 7.66310 7.87155 7.95427 8.04462 8.33878 8.54349 8.92024 9.53354 11.00948 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027592 B = 0.003452 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.554481 B = 8110.128025 C = 8666.186337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.155 4.155 6 C 0.093 3.907 7 H 0.120 0.880 8 O -0.539 6.539 9 C 0.479 3.521 10 O -0.546 6.546 11 N -0.598 5.598 12 C 0.104 3.896 13 C -0.137 4.137 14 C -0.113 4.113 15 C 0.039 3.961 16 H 0.029 0.971 17 C -0.514 4.514 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.116 3.884 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.380 0.620 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.036 0.964 44 H 0.260 0.740 45 H 0.055 0.945 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.224 -13.039 -6.007 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.152 4.152 5 C -0.193 4.193 6 C 0.030 3.970 7 H 0.138 0.862 8 O -0.344 6.344 9 C 0.266 3.734 10 O -0.425 6.425 11 N -0.331 5.331 12 C -0.019 4.019 13 C -0.175 4.175 14 C -0.151 4.151 15 C 0.020 3.980 16 H 0.047 0.953 17 C -0.552 4.552 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.005 4.005 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.228 0.772 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.115 0.885 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.526 -13.211 -5.925 19.813 hybrid contribution 0.024 1.410 0.081 1.413 sum -13.501 -11.801 -5.845 18.860 Atomic orbital electron populations 1.21784 0.96056 1.01452 1.01793 1.21534 0.95688 0.97024 1.02039 1.21635 0.95391 0.96710 1.02115 1.21541 0.95064 0.95739 1.02867 1.22443 0.94152 0.98583 1.04084 1.21858 0.93722 0.91843 0.89535 0.86219 1.86552 1.77570 1.55094 1.15194 1.21437 0.80522 0.88714 0.82737 1.90671 1.41231 1.71089 1.39468 1.48345 1.53996 1.15677 1.15071 1.21934 0.94951 0.97392 0.87645 1.22029 0.99191 1.01235 0.95033 1.21634 0.99094 0.90365 1.03966 1.18984 0.93506 0.96872 0.88596 0.95254 1.21112 1.33766 0.92770 1.07576 0.92433 1.24944 0.95591 0.97377 0.95955 1.69881 1.37978 1.32432 1.12460 0.86517 0.78270 0.85057 0.78053 1.19734 1.21028 1.21001 1.22029 0.98211 0.78674 1.01619 0.92847 0.92927 0.92739 0.92086 0.92008 0.91931 0.92093 0.91163 0.91746 0.89652 0.91120 0.77171 0.91681 0.90743 0.92327 0.92289 0.88545 0.94565 0.93006 0.92633 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.12 -0.93 5.21 -26.73 -0.14 -1.07 16 4 C -0.11 -0.99 5.11 -26.73 -0.14 -1.12 16 5 C -0.15 -1.57 4.44 -26.73 -0.12 -1.69 16 6 C 0.09 1.23 2.55 -27.88 -0.07 1.16 16 7 H 0.12 1.50 7.43 -51.93 -0.39 1.12 16 8 O -0.54 -7.42 12.53 -55.09 -0.69 -8.11 16 9 C 0.48 8.52 7.11 -10.99 -0.08 8.44 16 10 O -0.55 -11.80 15.74 -14.30 -0.23 -12.03 16 11 N -0.60 -10.74 2.97 -172.74 -0.51 -11.26 16 12 C 0.10 1.52 4.89 -3.71 -0.02 1.50 16 13 C -0.14 -2.35 6.08 -26.61 -0.16 -2.51 16 14 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 15 C 0.04 0.96 2.25 -91.63 -0.21 0.76 16 16 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.51 -13.85 8.57 -34.44 -0.30 -14.15 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 20 N -0.89 -24.85 11.31 55.43 0.63 -24.22 16 21 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.12 2.48 5.66 -3.69 -0.02 2.46 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.64 7.82 -51.93 -0.41 0.23 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.85 5.43 -51.93 -0.28 0.56 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.38 4.38 8.79 45.56 0.40 4.78 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.86 4.74 -51.93 -0.25 0.62 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.10 2.42 6.03 -51.93 -0.31 2.11 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.08 1.83 7.01 -51.93 -0.36 1.47 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -30.51 356.81 -9.19 -39.70 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.48 Total: 3.41 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.26 Total: -8.90 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.11 Total: -35.48 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.92 Total: -20.14 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.51 -9.19 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855253229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.418 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds