Wall clock time and date at job start Tue Mar 31 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46849 * 2 1 4 4 C 1.53009 * 109.46813 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.46837 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47248 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47259 * 57.25283 * 6 5 4 8 8 O 1.42905 * 109.46999 * 297.25361 * 6 5 4 9 9 C 1.50699 * 109.47299 * 177.25753 * 6 5 4 10 10 O 1.21280 * 120.00449 * 108.26675 * 9 6 5 11 11 N 1.34775 * 119.99905 * 288.25693 * 9 6 5 12 12 C 1.46932 * 120.63031 * 5.07115 * 11 9 6 13 13 C 1.53189 * 108.77693 * 126.36335 * 12 11 9 14 14 C 1.53038 * 109.31245 * 54.63783 * 13 12 11 15 15 C 1.53041 * 109.53879 * 298.63261 * 14 13 12 16 16 H 1.09000 * 109.49773 * 301.38615 * 15 14 13 17 17 C 1.50698 * 109.49960 * 181.31363 * 15 14 13 18 18 H 1.08000 * 120.00503 * 239.99818 * 17 15 14 19 19 C 1.37875 * 119.99957 * 60.00139 * 17 15 14 20 20 N 1.31519 * 120.00189 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00443 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47202 * 59.99738 * 21 19 17 23 23 H 1.48493 * 109.47605 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46963 * 300.00231 * 21 19 17 25 25 C 1.46927 * 120.63411 * 184.78535 * 11 9 6 26 26 H 1.09001 * 109.46777 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47466 * 300.00499 * 1 2 3 28 28 H 1.09003 * 109.46799 * 60.01001 * 1 2 3 29 29 H 1.08994 * 109.47466 * 239.99501 * 2 1 3 30 30 H 1.09003 * 109.46799 * 119.98999 * 2 1 3 31 31 H 1.08995 * 109.47194 * 59.99974 * 3 2 1 32 32 H 1.09001 * 109.47086 * 299.98912 * 3 2 1 33 33 H 1.09001 * 109.46664 * 299.99486 * 4 3 2 34 34 H 1.08994 * 109.47226 * 59.99670 * 4 3 2 35 35 H 1.08999 * 109.47556 * 299.99930 * 5 4 3 36 36 H 1.09004 * 109.47110 * 59.99942 * 5 4 3 37 37 H 0.96703 * 114.00220 * 299.99761 * 8 6 5 38 38 H 1.09001 * 109.58762 * 246.15692 * 12 11 9 39 39 H 1.09000 * 109.58618 * 6.57721 * 12 11 9 40 40 H 1.09006 * 109.49384 * 174.58694 * 13 12 11 41 41 H 1.09000 * 109.49899 * 294.68274 * 13 12 11 42 42 H 1.09004 * 109.46128 * 58.65202 * 14 13 12 43 43 H 1.08995 * 109.46174 * 178.62673 * 14 13 12 44 44 H 0.96989 * 120.00347 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.58364 * 353.42317 * 25 11 9 46 46 H 1.09006 * 109.58122 * 113.84720 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6099 2.8851 0.0013 7 1 5.9740 2.3286 -0.8623 8 8 6.0853 2.2691 1.1999 9 6 6.1123 4.3043 -0.0673 10 8 6.6240 4.8143 0.9068 11 7 5.9931 5.0067 -1.2113 12 6 5.2778 4.4434 -2.3646 13 6 4.2003 5.4372 -2.8099 14 6 4.8462 6.7990 -3.0749 15 6 5.4834 7.3229 -1.7858 16 1 4.7214 7.4052 -1.0108 17 6 6.0911 8.6783 -2.0399 18 1 7.1492 8.8328 -1.8882 19 6 5.2963 9.7213 -2.4658 20 7 4.0077 9.5334 -2.6500 21 14 6.0493 11.4016 -2.7800 22 1 7.0888 11.2889 -3.8345 23 1 4.9909 12.3429 -3.2262 24 1 6.6669 11.9091 -1.5285 25 6 6.5706 6.3528 -1.3270 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9329 0.9289 0.8909 34 1 3.9337 0.9286 -0.8890 35 1 3.7170 3.3984 -0.8904 36 1 3.7162 3.3994 0.8895 37 1 5.7993 2.7125 2.0103 38 1 5.9786 4.2737 -3.1820 39 1 4.8102 3.5009 -2.0798 40 1 3.7266 5.0754 -3.7225 41 1 3.4505 5.5367 -2.0250 42 1 5.6132 6.6940 -3.8424 43 1 4.0857 7.5016 -3.4154 44 1 3.4485 10.2672 -2.9493 45 1 6.9558 6.6696 -0.3578 46 1 7.3790 6.3419 -2.0581 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855253230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:00 Heat of formation + Delta-G solvation = -121.802595 kcal Electronic energy + Delta-G solvation = -23364.143504 eV Core-core repulsion = 20059.308970 eV Total energy + Delta-G solvation = -3304.834534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.12350 -37.50458 -36.64918 -35.57590 -33.69336 -32.41802 -31.38405 -30.38985 -28.49957 -25.52058 -25.10742 -23.73147 -21.75371 -21.60461 -21.20901 -20.11113 -18.50656 -17.41987 -16.61783 -16.33928 -15.84278 -15.37061 -14.83869 -14.63927 -14.38834 -13.92600 -13.64625 -13.48771 -13.43845 -13.13017 -12.90811 -12.78319 -12.26284 -12.11981 -12.00866 -11.90139 -11.56216 -11.25034 -11.04596 -11.01559 -10.95963 -10.85175 -10.79122 -10.62120 -10.51887 -10.30271 -9.98920 -9.81699 -9.48690 -9.12683 -8.83425 -8.41608 -7.95625 -6.04800 -4.12050 2.89241 3.29602 3.34040 3.35993 3.45127 4.28077 4.40056 4.52483 4.71676 4.76197 4.82621 4.92582 5.03925 5.20521 5.24417 5.27807 5.30770 5.51070 5.56703 5.57766 5.60458 5.69164 5.76417 5.79381 5.88881 5.91034 6.03271 6.07936 6.17915 6.25921 6.27576 6.34377 6.43638 6.61867 6.76025 6.91914 7.11469 7.28142 7.52858 7.65512 7.86813 7.95630 8.04016 8.33607 8.54091 8.91256 9.52989 11.00685 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020716 B = 0.003866 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.304533 B = 7240.310235 C = 8114.288494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.113 4.113 5 C -0.156 4.156 6 C 0.094 3.906 7 H 0.118 0.882 8 O -0.542 6.542 9 C 0.480 3.520 10 O -0.547 6.547 11 N -0.598 5.598 12 C 0.099 3.901 13 C -0.134 4.134 14 C -0.113 4.113 15 C 0.041 3.959 16 H 0.028 0.972 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.115 3.885 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.382 0.618 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.036 0.964 43 H 0.096 0.904 44 H 0.261 0.739 45 H 0.078 0.922 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 -17.283 1.399 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.150 4.150 5 C -0.194 4.194 6 C 0.032 3.968 7 H 0.135 0.865 8 O -0.347 6.347 9 C 0.267 3.733 10 O -0.425 6.425 11 N -0.331 5.331 12 C -0.024 4.024 13 C -0.173 4.173 14 C -0.151 4.151 15 C 0.022 3.978 16 H 0.047 0.953 17 C -0.554 4.554 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.006 4.006 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.231 0.769 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.393 -17.323 1.440 17.929 hybrid contribution 0.033 1.439 -0.002 1.440 sum -4.360 -15.883 1.438 16.533 Atomic orbital electron populations 1.21786 0.96041 1.01392 1.01897 1.21526 0.95719 0.97028 1.01914 1.21648 0.95349 0.96666 1.02323 1.21520 0.95128 0.95661 1.02702 1.22450 0.93978 0.98566 1.04413 1.21854 0.93984 0.91062 0.89944 0.86472 1.86523 1.77568 1.55094 1.15508 1.21440 0.79881 0.88810 0.83198 1.90669 1.45569 1.70987 1.35313 1.48327 1.54024 1.18125 1.12639 1.21974 0.95066 0.96885 0.88477 1.22003 0.97182 0.97874 1.00202 1.21633 1.00713 0.93310 0.99410 1.18874 0.92983 0.92137 0.93818 0.95341 1.21037 0.94826 0.94112 1.45416 0.92541 1.24931 0.94804 0.98796 0.95236 1.69855 1.04287 1.32051 1.46582 0.86632 0.78782 0.83737 0.78711 1.20246 1.21291 1.20225 1.21933 0.97281 0.79705 1.01638 0.92977 0.92787 0.92703 0.92097 0.92139 0.91996 0.91821 0.91212 0.91884 0.89390 0.90917 0.76925 0.91790 0.90474 0.92332 0.92338 0.94536 0.88566 0.92903 0.90345 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.96 5.93 -26.73 -0.16 -1.12 16 3 C -0.12 -1.06 5.22 -26.72 -0.14 -1.20 16 4 C -0.11 -1.03 5.09 -26.73 -0.14 -1.17 16 5 C -0.16 -1.74 4.47 -26.73 -0.12 -1.86 16 6 C 0.09 1.25 2.56 -27.88 -0.07 1.17 16 7 H 0.12 1.37 7.55 -51.93 -0.39 0.98 16 8 O -0.54 -7.37 12.49 -54.86 -0.69 -8.06 16 9 C 0.48 8.55 7.05 -10.99 -0.08 8.47 16 10 O -0.55 -11.81 15.72 -14.07 -0.22 -12.03 16 11 N -0.60 -10.81 2.98 -173.02 -0.52 -11.32 16 12 C 0.10 1.46 5.58 -3.71 -0.02 1.44 16 13 C -0.13 -2.27 6.05 -26.61 -0.16 -2.44 16 14 C -0.11 -2.46 4.96 -26.69 -0.13 -2.60 16 15 C 0.04 0.99 2.24 -91.87 -0.21 0.79 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.52 -13.87 8.56 -34.44 -0.29 -14.16 16 18 H 0.06 1.50 7.75 -52.49 -0.41 1.10 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.69 11.31 55.43 0.63 -24.06 16 21 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.12 2.48 5.64 -3.93 -0.02 2.46 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.66 7.76 -51.93 -0.40 0.26 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.00 5.57 -51.93 -0.29 0.71 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.38 4.54 8.72 45.56 0.40 4.94 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.90 4.17 -51.93 -0.22 0.68 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.10 2.40 6.04 -51.93 -0.31 2.08 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.08 1.83 7.00 -51.93 -0.36 1.47 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -30.14 356.91 -9.17 -39.31 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.46 Total: 4.13 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -1.27 Total: -9.33 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.11 Total: -35.38 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.91 Total: -20.09 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.14 -9.17 -39.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855253230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.492 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds