Wall clock time and date at job start Tue Mar 31 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52996 * 109.46975 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47219 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47086 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47702 * 54.99394 * 6 5 4 8 8 O 1.42903 * 109.46922 * 294.99280 * 6 5 4 9 9 C 1.50703 * 109.46787 * 175.00276 * 6 5 4 10 10 O 1.21280 * 120.00133 * 114.99922 * 9 6 5 11 11 N 1.34777 * 119.99782 * 294.98788 * 9 6 5 12 12 C 1.46928 * 120.63147 * 359.73098 * 11 9 6 13 13 C 1.52762 * 109.00788 * 233.58082 * 12 11 9 14 14 C 1.53038 * 109.38049 * 305.58492 * 13 12 11 15 15 C 1.53043 * 109.53961 * 61.24026 * 14 13 12 16 16 H 1.09004 * 109.49282 * 58.58810 * 15 14 13 17 17 C 1.50700 * 109.49768 * 178.67974 * 15 14 13 18 18 H 1.08001 * 119.99370 * 119.83901 * 17 15 14 19 19 C 1.37870 * 120.00161 * 299.84177 * 17 15 14 20 20 N 1.31510 * 120.00339 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00048 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47206 * 89.99950 * 21 19 17 23 23 H 1.48497 * 109.47427 * 209.99768 * 21 19 17 24 24 H 1.48507 * 109.47132 * 330.00120 * 21 19 17 25 25 C 1.46920 * 120.63256 * 180.02562 * 11 9 6 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 30 30 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47367 * 299.99815 * 4 3 2 34 34 H 1.09004 * 109.47368 * 60.00217 * 4 3 2 35 35 H 1.09001 * 109.46630 * 300.00058 * 5 4 3 36 36 H 1.09000 * 109.47188 * 60.00209 * 5 4 3 37 37 H 0.96696 * 114.00224 * 300.00979 * 8 6 5 38 38 H 1.09002 * 109.58599 * 353.41168 * 12 11 9 39 39 H 1.08996 * 109.58717 * 113.83781 * 12 11 9 40 40 H 1.08997 * 109.56143 * 185.55165 * 13 12 11 41 41 H 1.08994 * 109.38759 * 65.50938 * 13 12 11 42 42 H 1.09002 * 109.46058 * 301.21763 * 14 13 12 43 43 H 1.08995 * 109.45998 * 181.26432 * 14 13 12 44 44 H 0.97002 * 120.00607 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.59240 * 246.16538 * 25 11 9 46 46 H 1.09000 * 109.58588 * 6.44931 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8850 0.0013 6 6 5.6101 2.8849 0.0013 7 1 5.9735 2.2958 -0.8406 8 8 6.0864 2.3151 1.2222 9 6 6.1124 4.3004 -0.1218 10 8 6.7331 4.8051 0.7897 11 7 5.8722 5.0053 -1.2451 12 6 5.1271 4.4055 -2.3604 13 6 5.9505 4.5428 -3.6398 14 6 6.3215 6.0127 -3.8497 15 6 7.1698 6.4995 -2.6726 16 1 8.0670 5.8857 -2.5924 17 6 7.5617 7.9374 -2.8959 18 1 7.2608 8.6953 -2.1877 19 6 8.3044 8.2855 -4.0041 20 7 8.6712 7.3626 -4.8662 21 14 8.7896 10.0680 -4.2812 22 1 10.0977 10.3320 -3.6296 23 1 8.9008 10.3299 -5.7386 24 1 7.7560 10.9591 -3.6955 25 6 6.3559 6.3860 -1.3803 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9330 0.9287 0.8909 34 1 3.9338 0.9285 -0.8891 35 1 3.7171 3.3990 -0.8887 36 1 3.7165 3.3986 0.8913 37 1 5.8009 2.7891 2.0152 38 1 4.9478 3.3503 -2.1545 39 1 4.1756 4.9226 -2.4842 40 1 5.3660 4.1902 -4.4896 41 1 6.8591 3.9474 -3.5510 42 1 5.4126 6.6110 -3.9143 43 1 6.8899 6.1153 -4.7740 44 1 9.1941 7.6073 -5.6457 45 1 5.5068 7.0683 -1.4224 46 1 6.9851 6.6380 -0.5266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855253232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:06 Heat of formation + Delta-G solvation = -122.314502 kcal Electronic energy + Delta-G solvation = -23220.445840 eV Core-core repulsion = 19915.589108 eV Total energy + Delta-G solvation = -3304.856732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.12808 -37.51879 -36.66718 -35.61352 -33.71346 -32.45725 -31.36612 -30.39186 -28.51861 -25.54669 -25.11980 -23.74521 -21.84886 -21.62444 -21.23110 -20.05254 -18.58994 -17.35406 -16.63916 -16.39439 -15.86242 -15.41472 -14.79936 -14.67624 -14.28575 -13.97595 -13.63712 -13.56163 -13.45013 -13.32698 -12.80357 -12.68947 -12.25932 -12.19422 -12.07337 -11.93906 -11.58682 -11.29881 -11.11772 -11.07097 -11.01201 -10.83693 -10.75532 -10.66029 -10.55827 -10.31067 -9.97246 -9.81613 -9.49119 -9.11639 -8.82677 -8.41665 -7.96331 -6.04431 -4.11665 2.90352 3.28505 3.34975 3.36864 3.44472 4.24763 4.40281 4.48639 4.66434 4.71568 4.78874 4.88939 4.98722 5.20100 5.23202 5.26601 5.28819 5.43581 5.53429 5.55074 5.55926 5.65782 5.71276 5.77117 5.83902 5.85151 5.99332 6.04566 6.12222 6.19804 6.28382 6.34215 6.43317 6.61420 6.75495 6.90765 7.11804 7.28343 7.52592 7.66129 7.87140 7.95379 8.04247 8.33863 8.54287 8.91874 9.53436 11.01200 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027634 B = 0.003450 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.012891 B = 8113.061823 C = 8667.616195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.155 4.155 6 C 0.093 3.907 7 H 0.120 0.880 8 O -0.540 6.540 9 C 0.479 3.521 10 O -0.546 6.546 11 N -0.598 5.598 12 C 0.104 3.896 13 C -0.137 4.137 14 C -0.112 4.112 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.514 4.514 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.116 3.884 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.380 0.620 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.036 0.964 43 H 0.096 0.904 44 H 0.261 0.739 45 H 0.055 0.945 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.233 -13.045 5.961 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.152 4.152 5 C -0.192 4.192 6 C 0.030 3.970 7 H 0.138 0.862 8 O -0.344 6.344 9 C 0.266 3.734 10 O -0.425 6.425 11 N -0.331 5.331 12 C -0.019 4.019 13 C -0.175 4.175 14 C -0.150 4.150 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.553 4.553 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.005 4.005 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.228 0.772 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.537 -13.217 5.875 19.811 hybrid contribution 0.039 1.413 -0.062 1.415 sum -13.498 -11.804 5.813 18.850 Atomic orbital electron populations 1.21785 0.96056 1.01451 1.01793 1.21534 0.95688 0.97024 1.02039 1.21634 0.95391 0.96709 1.02116 1.21542 0.95064 0.95740 1.02865 1.22441 0.94145 0.98577 1.04081 1.21856 0.93739 0.91827 0.89531 0.86219 1.86552 1.77574 1.55103 1.15185 1.21440 0.80496 0.88702 0.82767 1.90673 1.41236 1.71111 1.39435 1.48342 1.54199 1.15616 1.14919 1.21837 0.95065 0.97365 0.87593 1.21955 0.99249 1.01249 0.95091 1.21629 0.99109 0.90351 1.03938 1.18963 0.93501 0.96857 0.88600 0.95266 1.21066 1.33589 0.92767 1.07890 0.92486 1.24935 0.95585 0.97363 0.95929 1.69867 1.37641 1.32547 1.12710 0.86574 0.79010 0.85078 0.77223 1.20644 1.21229 1.19884 1.22009 0.98222 0.78692 1.01612 0.92740 0.92927 0.92848 0.92085 0.92008 0.91924 0.92101 0.91168 0.91743 0.89662 0.91118 0.77169 0.90772 0.91704 0.92287 0.92308 0.94542 0.88595 0.92941 0.92643 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.12 -0.93 5.21 -26.73 -0.14 -1.07 16 4 C -0.11 -0.99 5.11 -26.73 -0.14 -1.12 16 5 C -0.15 -1.57 4.44 -26.73 -0.12 -1.69 16 6 C 0.09 1.23 2.55 -27.88 -0.07 1.16 16 7 H 0.12 1.50 7.42 -51.93 -0.39 1.12 16 8 O -0.54 -7.42 12.53 -55.09 -0.69 -8.11 16 9 C 0.48 8.52 7.10 -10.98 -0.08 8.45 16 10 O -0.55 -11.80 15.74 -14.30 -0.23 -12.03 16 11 N -0.60 -10.74 2.98 -173.06 -0.52 -11.26 16 12 C 0.10 1.53 4.86 -3.93 -0.02 1.51 16 13 C -0.14 -2.36 6.06 -26.83 -0.16 -2.52 16 14 C -0.11 -2.47 4.96 -26.69 -0.13 -2.60 16 15 C 0.04 0.97 2.25 -91.67 -0.21 0.77 16 16 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.51 -13.88 8.56 -34.44 -0.29 -14.18 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 21 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 25 C 0.12 2.48 5.66 -3.74 -0.02 2.46 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.64 7.82 -51.93 -0.41 0.23 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.85 5.45 -51.93 -0.28 0.56 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.38 4.38 8.79 45.56 0.40 4.78 16 38 H 0.07 0.86 4.76 -51.93 -0.25 0.61 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.10 2.41 6.05 -51.93 -0.31 2.09 16 44 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.08 1.83 7.00 -51.93 -0.36 1.47 16 LS Contribution 356.82 15.07 5.38 5.38 Total: -1.00 -30.51 356.82 -9.19 -39.70 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.48 Total: 3.42 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -1.26 Total: -8.89 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.11 Total: -35.50 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.92 Total: -20.14 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.51 -9.19 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855253232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.613 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds