Wall clock time and date at job start Tue Mar 31 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52996 * 109.46975 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47219 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47086 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47702 * 54.99394 * 6 5 4 8 8 O 1.42903 * 109.46922 * 294.99280 * 6 5 4 9 9 C 1.50703 * 109.46787 * 175.00276 * 6 5 4 10 10 O 1.21280 * 120.00133 * 114.99922 * 9 6 5 11 11 N 1.34777 * 119.99782 * 294.98788 * 9 6 5 12 12 C 1.46928 * 120.63147 * 359.73098 * 11 9 6 13 13 C 1.52762 * 109.00788 * 233.58082 * 12 11 9 14 14 C 1.53038 * 109.38049 * 305.58492 * 13 12 11 15 15 C 1.53043 * 109.53961 * 61.24026 * 14 13 12 16 16 H 1.09004 * 109.49282 * 58.58810 * 15 14 13 17 17 C 1.50700 * 109.49768 * 178.67974 * 15 14 13 18 18 H 1.08001 * 119.99370 * 119.83901 * 17 15 14 19 19 C 1.37870 * 120.00161 * 299.84177 * 17 15 14 20 20 N 1.31510 * 120.00339 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00048 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47206 * 89.99950 * 21 19 17 23 23 H 1.48497 * 109.47427 * 209.99768 * 21 19 17 24 24 H 1.48507 * 109.47132 * 330.00120 * 21 19 17 25 25 C 1.46920 * 120.63256 * 180.02562 * 11 9 6 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 30 30 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47367 * 299.99815 * 4 3 2 34 34 H 1.09004 * 109.47368 * 60.00217 * 4 3 2 35 35 H 1.09001 * 109.46630 * 300.00058 * 5 4 3 36 36 H 1.09000 * 109.47188 * 60.00209 * 5 4 3 37 37 H 0.96696 * 114.00224 * 300.00979 * 8 6 5 38 38 H 1.09002 * 109.58599 * 353.41168 * 12 11 9 39 39 H 1.08996 * 109.58717 * 113.83781 * 12 11 9 40 40 H 1.08997 * 109.56143 * 185.55165 * 13 12 11 41 41 H 1.08994 * 109.38759 * 65.50938 * 13 12 11 42 42 H 1.09002 * 109.46058 * 301.21763 * 14 13 12 43 43 H 1.08995 * 109.45998 * 181.26432 * 14 13 12 44 44 H 0.97002 * 120.00607 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.59240 * 246.16538 * 25 11 9 46 46 H 1.09000 * 109.58588 * 6.44931 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8850 0.0013 6 6 5.6101 2.8849 0.0013 7 1 5.9735 2.2958 -0.8406 8 8 6.0864 2.3151 1.2222 9 6 6.1124 4.3004 -0.1218 10 8 6.7331 4.8051 0.7897 11 7 5.8722 5.0053 -1.2451 12 6 5.1271 4.4055 -2.3604 13 6 5.9505 4.5428 -3.6398 14 6 6.3215 6.0127 -3.8497 15 6 7.1698 6.4995 -2.6726 16 1 8.0670 5.8857 -2.5924 17 6 7.5617 7.9374 -2.8959 18 1 7.2608 8.6953 -2.1877 19 6 8.3044 8.2855 -4.0041 20 7 8.6712 7.3626 -4.8662 21 14 8.7896 10.0680 -4.2812 22 1 10.0977 10.3320 -3.6296 23 1 8.9008 10.3299 -5.7386 24 1 7.7560 10.9591 -3.6955 25 6 6.3559 6.3860 -1.3803 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9330 0.9287 0.8909 34 1 3.9338 0.9285 -0.8891 35 1 3.7171 3.3990 -0.8887 36 1 3.7165 3.3986 0.8913 37 1 5.8009 2.7891 2.0152 38 1 4.9478 3.3503 -2.1545 39 1 4.1756 4.9226 -2.4842 40 1 5.3660 4.1902 -4.4896 41 1 6.8591 3.9474 -3.5510 42 1 5.4126 6.6110 -3.9143 43 1 6.8899 6.1153 -4.7740 44 1 9.1941 7.6073 -5.6457 45 1 5.5068 7.0683 -1.4224 46 1 6.9851 6.6380 -0.5266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855253232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:05 Heat of formation + Delta-G solvation = -140.687062 kcal Electronic energy + Delta-G solvation = -23221.242534 eV Core-core repulsion = 19915.589108 eV Total energy + Delta-G solvation = -3305.653426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.49458 -38.85734 -37.87834 -36.44962 -35.47200 -33.55432 -32.84577 -31.99338 -29.52084 -27.04157 -26.64505 -24.95285 -23.40233 -22.45895 -21.90378 -21.51823 -20.07647 -18.79015 -18.22492 -17.81087 -16.86634 -16.62355 -16.31431 -16.08618 -15.48752 -15.25453 -15.06187 -14.65859 -14.46896 -14.29949 -14.24965 -13.92579 -13.72029 -13.64278 -13.09215 -12.90102 -12.83726 -12.65134 -12.57237 -12.47705 -12.03417 -11.93104 -11.87969 -11.71148 -11.69047 -11.59266 -11.46483 -11.28122 -11.18490 -10.83731 -10.48023 -10.34569 -9.53641 -8.12341 -6.27636 1.39647 1.40966 1.50343 1.52970 2.03770 2.42252 3.14311 3.22935 3.46734 3.79381 3.94170 4.06455 4.08441 4.20645 4.23021 4.33485 4.37360 4.48930 4.51764 4.58614 4.63768 4.77469 4.81431 4.84716 4.86793 4.95578 4.98195 5.07372 5.10565 5.13031 5.21613 5.26233 5.30688 5.42720 5.45652 5.53245 5.53862 5.59883 5.60636 5.91780 6.12520 6.32812 6.42306 6.63287 6.81941 7.12863 7.40664 8.91411 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027634 B = 0.003450 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.012891 B = 8113.061823 C = 8667.616195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.109 4.109 5 C -0.145 4.145 6 C 0.104 3.896 7 H 0.134 0.866 8 O -0.550 6.550 9 C 0.471 3.529 10 O -0.593 6.593 11 N -0.600 5.600 12 C 0.104 3.896 13 C -0.131 4.131 14 C -0.106 4.106 15 C 0.040 3.960 16 H -0.017 1.017 17 C -0.538 4.538 18 H 0.052 0.948 19 C 0.017 3.983 20 N -0.913 5.913 21 Si 0.955 3.045 22 H -0.281 1.281 23 H -0.279 1.279 24 H -0.266 1.266 25 C 0.128 3.872 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.389 0.611 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.043 0.957 42 H 0.040 0.960 43 H 0.061 0.939 44 H 0.262 0.738 45 H 0.064 0.936 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.385 -14.115 5.603 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.146 4.146 5 C -0.183 4.183 6 C 0.042 3.958 7 H 0.151 0.849 8 O -0.355 6.355 9 C 0.261 3.739 10 O -0.475 6.475 11 N -0.332 5.332 12 C -0.017 4.017 13 C -0.169 4.169 14 C -0.144 4.144 15 C 0.021 3.979 16 H 0.001 0.999 17 C -0.577 4.577 18 H 0.070 0.930 19 C -0.183 4.183 20 N -0.552 5.552 21 Si 0.780 3.220 22 H -0.207 1.207 23 H -0.205 1.205 24 H -0.191 1.191 25 C 0.006 3.994 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.238 0.762 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.717 -14.309 5.511 21.958 hybrid contribution 0.753 1.738 0.075 1.896 sum -14.963 -12.571 5.586 20.325 Atomic orbital electron populations 1.21789 0.95733 1.01781 1.01845 1.21533 0.95991 0.96700 1.02095 1.21604 0.94584 0.97075 1.02311 1.21495 0.95653 0.94402 1.03060 1.22394 0.91315 0.99906 1.04651 1.21942 0.95747 0.88250 0.89858 0.84872 1.86528 1.78095 1.55134 1.15787 1.22438 0.79443 0.90280 0.81784 1.90646 1.43272 1.72487 1.41066 1.48401 1.54259 1.14320 1.16230 1.22118 0.94757 0.99928 0.84876 1.21877 0.99714 0.97255 0.98021 1.21422 0.98078 0.94000 1.00915 1.18872 0.92712 0.94938 0.91350 0.99854 1.21439 1.34155 0.94112 1.07981 0.92972 1.25690 0.95569 1.01289 0.95709 1.70004 1.37973 1.34263 1.12990 0.85607 0.78554 0.80470 0.77327 1.20689 1.20463 1.19090 1.21552 0.97683 0.81466 0.98730 0.92606 0.92521 0.92886 0.92245 0.91778 0.91425 0.92243 0.91686 0.90929 0.88675 0.91046 0.76166 0.86696 0.89261 0.88801 0.93822 0.94134 0.91998 0.92905 0.91728 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.96 16 2 C -0.13 -1.46 5.93 30.60 0.18 -1.28 16 3 C -0.12 -1.44 5.21 30.59 0.16 -1.28 16 4 C -0.11 -1.50 5.11 30.60 0.16 -1.34 16 5 C -0.14 -2.46 4.44 30.60 0.14 -2.32 16 6 C 0.10 2.52 2.55 29.85 0.08 2.60 16 7 H 0.13 2.90 7.42 -2.39 -0.02 2.88 16 8 O -0.55 -14.24 12.53 -129.99 -1.63 -15.87 16 9 C 0.47 16.43 7.10 87.66 0.62 17.05 16 10 O -0.59 -26.12 15.74 15.96 0.25 -25.87 16 11 N -0.60 -20.99 2.98 -819.82 -2.44 -23.44 16 12 C 0.10 2.72 4.86 86.22 0.42 3.14 16 13 C -0.13 -4.23 6.06 30.53 0.19 -4.05 16 14 C -0.11 -4.67 4.96 30.62 0.15 -4.52 16 15 C 0.04 2.04 2.25 -11.48 -0.03 2.02 16 16 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 17 C -0.54 -29.93 8.56 25.60 0.22 -29.71 16 18 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 19 C 0.02 0.92 5.30 84.65 0.45 1.37 16 20 N -0.91 -52.38 11.32 21.44 0.24 -52.14 16 21 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 C 0.13 5.62 5.66 86.35 0.49 6.11 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.99 7.82 -2.39 -0.02 0.98 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 1.46 5.45 -2.39 -0.01 1.44 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 37 H 0.39 8.54 8.79 -74.06 -0.65 7.89 16 38 H 0.12 2.12 4.76 -2.39 -0.01 2.11 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.06 3.16 6.05 -2.39 -0.01 3.15 16 44 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 45 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.05 2.42 7.00 -2.39 -0.02 2.41 16 Total: -1.00 -69.18 356.82 2.68 -66.51 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.29 Total: 18.26 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 3.93 Total: -13.18 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -2.20 Total: -75.58 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -1.38 Total: -41.74 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -69.18 2.68 -66.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855253232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.181 kcal (2) G-P(sol) polarization free energy of solvation -69.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds