Wall clock time and date at job start Tue Mar 31 2020 05:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48499 * 109.47262 * 240.00206 * 3 2 1 5 5 H 1.48498 * 109.46939 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47181 * 119.99783 * 3 2 1 7 7 C 1.37882 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99793 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00157 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.87325 * 62.39447 * 9 7 2 11 11 C 1.55142 * 110.99129 * 298.54713 * 9 7 2 12 12 C 1.54312 * 103.01818 * 206.25306 * 11 9 7 13 13 N 1.47448 * 107.23367 * 22.28767 * 12 11 9 14 14 C 1.46904 * 110.99813 * 123.25613 * 13 12 11 15 15 C 1.52999 * 109.47233 * 69.87251 * 14 13 12 16 16 O 1.42899 * 109.46775 * 65.00096 * 15 14 13 17 17 C 1.42905 * 113.99931 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47063 * 209.99837 * 17 16 15 19 19 C 1.53006 * 109.47164 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.46626 * 59.99702 * 19 18 17 21 21 C 1.52997 * 109.47592 * 300.00035 * 20 19 18 22 22 C 1.52996 * 109.47165 * 60.00300 * 21 20 19 23 23 C 1.47844 * 108.56562 * 0.98602 * 13 12 11 24 24 H 0.97003 * 119.99726 * 359.97438 * 1 2 3 25 25 H 0.96700 * 113.99580 * 297.60785 * 10 9 7 26 26 H 1.09005 * 110.70461 * 87.87249 * 11 9 7 27 27 H 1.08994 * 110.85472 * 324.70949 * 11 9 7 28 28 H 1.08999 * 109.89211 * 262.87621 * 12 11 9 29 29 H 1.09008 * 110.02162 * 141.76504 * 12 11 9 30 30 H 1.09001 * 109.47132 * 309.86781 * 14 13 12 31 31 H 1.09000 * 109.46851 * 189.87474 * 14 13 12 32 32 H 1.09002 * 109.47176 * 305.00018 * 15 14 13 33 33 H 1.09002 * 109.46611 * 184.99772 * 15 14 13 34 34 H 1.09000 * 109.46641 * 329.99528 * 17 16 15 35 35 H 1.09001 * 109.46922 * 59.99686 * 18 17 16 36 36 H 1.09000 * 109.47140 * 299.99386 * 18 17 16 37 37 H 1.08993 * 109.46955 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47050 * 300.00004 * 19 18 17 39 39 H 1.09000 * 109.47160 * 60.00369 * 20 19 18 40 40 H 1.09002 * 109.46719 * 180.02562 * 20 19 18 41 41 H 1.09000 * 109.47140 * 300.00346 * 21 20 19 42 42 H 1.09001 * 109.47375 * 180.02562 * 21 20 19 43 43 H 1.08992 * 109.47534 * 180.02562 * 22 21 20 44 44 H 1.08996 * 109.47134 * 59.99508 * 22 21 20 45 45 H 1.09007 * 110.37258 * 94.73467 * 23 13 12 46 46 H 1.09000 * 110.36887 * 217.07416 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4600 -2.6305 -1.1835 11 6 0.3741 -2.6347 1.2721 12 6 0.2539 -4.1627 1.4504 13 7 1.3921 -4.7761 0.7417 14 6 2.1863 -5.6157 1.6485 15 6 1.3836 -6.8632 2.0228 16 8 1.1724 -7.6613 0.8565 17 6 0.4277 -8.8570 1.0974 18 6 0.8632 -9.9375 0.1056 19 6 0.0663 -11.2179 0.3640 20 6 -1.4266 -10.9340 0.1861 21 6 -1.8620 -9.8534 1.1778 22 6 -1.0652 -8.5731 0.9195 23 6 2.2185 -3.6986 0.1570 24 1 -0.4850 0.8401 0.0004 25 1 -0.2255 -1.9547 -1.2752 26 1 -0.6070 -2.1868 1.1137 27 1 0.8675 -2.1838 2.1331 28 1 -0.6839 -4.5138 1.0198 29 1 0.2946 -4.4193 2.5091 30 1 2.4238 -5.0521 2.5508 31 1 3.1101 -5.9133 1.1524 32 1 0.4210 -6.5648 2.4381 33 1 1.9355 -7.4415 2.7638 34 1 0.6130 -9.2016 2.1147 35 1 1.9266 -10.1400 0.2327 36 1 0.6778 -9.5929 -0.9117 37 1 0.3768 -11.9878 -0.3423 38 1 0.2519 -11.5624 1.3813 39 1 -1.6122 -10.5895 -0.8313 40 1 -1.9943 -11.8460 0.3706 41 1 -1.6764 -10.1979 2.1952 42 1 -2.9257 -9.6515 1.0514 43 1 -1.3750 -7.8035 1.6263 44 1 -1.2508 -8.2287 -0.0978 45 1 3.0366 -3.4404 0.8296 46 1 2.6068 -4.0032 -0.8148 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886265167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:35 Heat of formation + Delta-G solvation = -114.212326 kcal Electronic energy + Delta-G solvation = -23369.106306 eV Core-core repulsion = 20064.600910 eV Total energy + Delta-G solvation = -3304.505395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.21597 -38.29099 -36.40528 -34.56128 -32.08969 -31.05616 -30.83999 -29.36080 -28.14221 -27.16111 -24.32568 -22.83319 -22.34509 -22.02091 -19.95835 -19.62432 -19.44505 -16.98882 -16.75175 -15.61996 -15.47175 -14.90598 -14.83518 -14.60384 -14.38177 -14.00136 -13.71625 -13.60747 -13.19932 -12.68061 -12.51638 -12.33924 -12.23344 -11.93970 -11.76284 -11.32633 -11.25751 -11.20746 -11.15650 -10.96199 -10.83811 -10.71108 -10.50387 -10.43186 -10.38939 -10.29579 -10.17620 -9.78863 -9.20689 -9.11787 -8.55574 -8.02126 -7.45808 -6.17344 -4.25501 3.25328 3.30168 3.33234 3.79669 4.31699 4.60693 4.64078 4.71023 4.84706 5.06432 5.10129 5.12095 5.23953 5.35785 5.38642 5.42830 5.45234 5.49448 5.60491 5.66514 5.78914 5.80777 5.87472 5.94398 6.01017 6.03470 6.07481 6.10180 6.12099 6.20000 6.25458 6.30671 6.34944 6.53322 6.75433 6.94286 7.13721 7.46732 7.50439 7.53866 7.73280 7.84913 7.91975 8.22747 8.76609 9.43043 9.58461 10.89460 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.037802 B = 0.003284 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.528379 B = 8524.415877 C = 8753.931465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.252 3.748 10 O -0.577 6.577 11 C -0.144 4.144 12 C 0.044 3.956 13 N -0.516 5.516 14 C 0.051 3.949 15 C 0.072 3.928 16 O -0.361 6.361 17 C 0.090 3.910 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.141 4.141 23 C 0.059 3.941 24 H 0.266 0.734 25 H 0.376 0.624 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.541 -18.169 4.997 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.212 3.788 10 O -0.385 6.385 11 C -0.183 4.183 12 C -0.084 4.084 13 N -0.240 5.240 14 C -0.078 4.078 15 C -0.005 4.005 16 O -0.279 6.279 17 C 0.032 3.968 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.178 4.178 23 C -0.068 4.068 24 H 0.076 0.924 25 H 0.224 0.776 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.062 0.938 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.412 -18.848 4.331 19.391 hybrid contribution 0.246 1.944 1.205 2.300 sum -1.167 -16.904 5.536 17.826 Atomic orbital electron populations 1.69737 1.05918 1.27404 1.50357 1.25000 0.94982 0.99358 0.93765 0.86544 0.79584 0.82467 0.78730 1.20043 1.21175 1.20246 1.21529 0.93490 0.90790 1.51648 0.92214 1.19515 0.86850 0.90561 0.81899 1.86163 1.51292 1.56573 1.44463 1.23249 1.02602 0.91928 1.00538 1.22854 0.94682 0.96095 0.94723 1.63577 1.08608 1.21008 1.30813 1.22247 0.96785 0.93033 0.95754 1.22561 0.98731 0.91781 0.87448 1.88072 1.73939 1.33532 1.32384 1.22019 0.90956 0.85955 0.97888 1.21571 0.99816 0.93741 1.00218 1.21499 0.95136 0.97041 1.01637 1.21572 0.95885 0.98505 0.99989 1.21499 0.99619 0.95196 0.99126 1.22019 0.95214 0.97327 1.03282 1.22985 0.95066 0.90363 0.98361 0.92386 0.77567 0.90547 0.92781 0.91917 0.94954 0.93869 0.90622 0.93580 0.94003 0.93112 0.91582 0.90923 0.91664 0.92150 0.91693 0.92163 0.92300 0.91846 0.91905 0.90793 0.93766 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.20 10.75 55.43 0.60 -23.60 16 2 C 0.07 1.91 5.29 -17.82 -0.09 1.82 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -14.62 8.27 -34.44 -0.28 -14.91 16 8 H 0.06 1.61 7.79 -52.49 -0.41 1.21 16 9 C 0.25 6.44 0.87 -89.63 -0.08 6.36 16 10 O -0.58 -15.62 13.16 -35.23 -0.46 -16.08 16 11 C -0.14 -3.40 5.37 -24.91 -0.13 -3.53 16 12 C 0.04 0.90 6.14 -2.84 -0.02 0.88 16 13 N -0.52 -10.54 5.11 -231.24 -1.18 -11.72 16 14 C 0.05 0.84 4.92 -3.82 -0.02 0.82 16 15 C 0.07 1.04 5.85 37.16 0.22 1.26 16 16 O -0.36 -5.67 9.94 -35.23 -0.35 -6.02 16 17 C 0.09 1.11 2.61 -26.73 -0.07 1.04 16 18 C -0.12 -1.25 5.57 -26.73 -0.15 -1.40 16 19 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 20 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 21 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 22 C -0.14 -1.68 5.54 -26.73 -0.15 -1.82 16 23 C 0.06 1.35 5.86 -2.30 -0.01 1.33 16 24 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.38 10.15 7.56 45.56 0.34 10.50 16 26 H 0.08 1.91 7.54 -51.93 -0.39 1.52 16 27 H 0.05 1.29 8.04 -51.93 -0.42 0.88 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.03 0.58 6.94 -51.92 -0.36 0.22 16 30 H 0.04 0.68 7.96 -51.93 -0.41 0.27 16 31 H 0.08 1.22 8.07 -51.93 -0.42 0.81 16 32 H 0.05 0.67 6.77 -51.93 -0.35 0.32 16 33 H 0.04 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.05 0.57 7.79 -51.93 -0.40 0.16 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.04 0.96 7.70 -51.92 -0.40 0.56 16 46 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -28.55 353.84 -10.19 -38.74 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.84 Total: 9.25 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.26 Total: -11.74 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.59 Total: -35.32 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.81 Total: -22.10 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.55 -10.19 -38.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886265167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.472 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds