Wall clock time and date at job start Tue Mar 31 2020 05:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48499 * 109.47262 * 240.00206 * 3 2 1 5 5 H 1.48498 * 109.46939 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47181 * 119.99783 * 3 2 1 7 7 C 1.37882 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99793 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00157 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.87325 * 62.39447 * 9 7 2 11 11 C 1.55142 * 110.99129 * 298.54713 * 9 7 2 12 12 C 1.54312 * 103.01818 * 206.25306 * 11 9 7 13 13 N 1.47448 * 107.23367 * 22.28767 * 12 11 9 14 14 C 1.46904 * 110.99813 * 123.25613 * 13 12 11 15 15 C 1.52999 * 109.47233 * 69.87251 * 14 13 12 16 16 O 1.42899 * 109.46775 * 65.00096 * 15 14 13 17 17 C 1.42905 * 113.99931 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47063 * 209.99837 * 17 16 15 19 19 C 1.53006 * 109.47164 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.46626 * 59.99702 * 19 18 17 21 21 C 1.52997 * 109.47592 * 300.00035 * 20 19 18 22 22 C 1.52996 * 109.47165 * 60.00300 * 21 20 19 23 23 C 1.47844 * 108.56562 * 0.98602 * 13 12 11 24 24 H 0.97003 * 119.99726 * 359.97438 * 1 2 3 25 25 H 0.96700 * 113.99580 * 297.60785 * 10 9 7 26 26 H 1.09005 * 110.70461 * 87.87249 * 11 9 7 27 27 H 1.08994 * 110.85472 * 324.70949 * 11 9 7 28 28 H 1.08999 * 109.89211 * 262.87621 * 12 11 9 29 29 H 1.09008 * 110.02162 * 141.76504 * 12 11 9 30 30 H 1.09001 * 109.47132 * 309.86781 * 14 13 12 31 31 H 1.09000 * 109.46851 * 189.87474 * 14 13 12 32 32 H 1.09002 * 109.47176 * 305.00018 * 15 14 13 33 33 H 1.09002 * 109.46611 * 184.99772 * 15 14 13 34 34 H 1.09000 * 109.46641 * 329.99528 * 17 16 15 35 35 H 1.09001 * 109.46922 * 59.99686 * 18 17 16 36 36 H 1.09000 * 109.47140 * 299.99386 * 18 17 16 37 37 H 1.08993 * 109.46955 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47050 * 300.00004 * 19 18 17 39 39 H 1.09000 * 109.47160 * 60.00369 * 20 19 18 40 40 H 1.09002 * 109.46719 * 180.02562 * 20 19 18 41 41 H 1.09000 * 109.47140 * 300.00346 * 21 20 19 42 42 H 1.09001 * 109.47375 * 180.02562 * 21 20 19 43 43 H 1.08992 * 109.47534 * 180.02562 * 22 21 20 44 44 H 1.08996 * 109.47134 * 59.99508 * 22 21 20 45 45 H 1.09007 * 110.37258 * 94.73467 * 23 13 12 46 46 H 1.09000 * 110.36887 * 217.07416 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4600 -2.6305 -1.1835 11 6 0.3741 -2.6347 1.2721 12 6 0.2539 -4.1627 1.4504 13 7 1.3921 -4.7761 0.7417 14 6 2.1863 -5.6157 1.6485 15 6 1.3836 -6.8632 2.0228 16 8 1.1724 -7.6613 0.8565 17 6 0.4277 -8.8570 1.0974 18 6 0.8632 -9.9375 0.1056 19 6 0.0663 -11.2179 0.3640 20 6 -1.4266 -10.9340 0.1861 21 6 -1.8620 -9.8534 1.1778 22 6 -1.0652 -8.5731 0.9195 23 6 2.2185 -3.6986 0.1570 24 1 -0.4850 0.8401 0.0004 25 1 -0.2255 -1.9547 -1.2752 26 1 -0.6070 -2.1868 1.1137 27 1 0.8675 -2.1838 2.1331 28 1 -0.6839 -4.5138 1.0198 29 1 0.2946 -4.4193 2.5091 30 1 2.4238 -5.0521 2.5508 31 1 3.1101 -5.9133 1.1524 32 1 0.4210 -6.5648 2.4381 33 1 1.9355 -7.4415 2.7638 34 1 0.6130 -9.2016 2.1147 35 1 1.9266 -10.1400 0.2327 36 1 0.6778 -9.5929 -0.9117 37 1 0.3768 -11.9878 -0.3423 38 1 0.2519 -11.5624 1.3813 39 1 -1.6122 -10.5895 -0.8313 40 1 -1.9943 -11.8460 0.3706 41 1 -1.6764 -10.1979 2.1952 42 1 -2.9257 -9.6515 1.0514 43 1 -1.3750 -7.8035 1.6263 44 1 -1.2508 -8.2287 -0.0978 45 1 3.0366 -3.4404 0.8296 46 1 2.6068 -4.0032 -0.8148 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886265167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:34 Heat of formation + Delta-G solvation = -133.275403 kcal Electronic energy + Delta-G solvation = -23369.932943 eV Core-core repulsion = 20064.600910 eV Total energy + Delta-G solvation = -3305.332032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.38629 -39.78741 -37.53902 -36.30625 -34.18470 -32.49163 -31.67026 -30.47799 -29.93598 -28.72962 -26.21745 -23.91903 -23.33404 -23.02896 -21.42102 -21.30042 -20.65365 -19.01479 -17.82143 -16.97526 -16.92594 -16.73027 -16.33640 -15.86700 -15.50698 -15.40157 -14.84310 -14.80120 -14.44039 -14.12264 -13.96158 -13.71957 -13.56485 -13.17848 -13.11769 -13.03702 -12.95245 -12.71547 -12.59880 -12.27523 -12.25950 -12.05956 -12.01725 -11.79141 -11.62286 -11.41934 -11.30928 -11.17369 -11.05656 -10.59570 -10.23285 -10.06468 -9.07375 -8.21406 -6.37764 1.40696 1.42269 1.49849 2.37796 2.78675 3.02500 3.17792 3.78824 3.84781 3.93260 4.03300 4.06901 4.15543 4.23424 4.29829 4.36028 4.38987 4.40099 4.44946 4.53708 4.59964 4.61821 4.64704 4.70520 4.77345 4.89865 4.94108 4.98981 5.08054 5.12534 5.14924 5.26417 5.27079 5.27773 5.33016 5.42837 5.47907 5.53934 5.54289 5.79771 5.98448 6.24131 6.30862 6.54364 6.67937 7.33724 7.45825 8.83685 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.037802 B = 0.003284 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.528379 B = 8524.415877 C = 8753.931465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 0.961 3.039 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.563 4.563 8 H 0.054 0.946 9 C 0.234 3.766 10 O -0.589 6.589 11 C -0.134 4.134 12 C 0.056 3.944 13 N -0.527 5.527 14 C 0.047 3.953 15 C 0.075 3.925 16 O -0.391 6.391 17 C 0.086 3.914 18 C -0.115 4.115 19 C -0.110 4.110 20 C -0.122 4.122 21 C -0.113 4.113 22 C -0.140 4.140 23 C 0.068 3.932 24 H 0.269 0.731 25 H 0.371 0.629 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 -19.546 6.438 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.786 3.214 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.602 4.602 8 H 0.073 0.927 9 C 0.194 3.806 10 O -0.396 6.396 11 C -0.173 4.173 12 C -0.072 4.072 13 N -0.251 5.251 14 C -0.081 4.081 15 C -0.002 4.002 16 O -0.310 6.310 17 C 0.028 3.972 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.159 4.159 21 C -0.150 4.150 22 C -0.178 4.178 23 C -0.060 4.060 24 H 0.078 0.922 25 H 0.219 0.781 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.017 -20.247 5.781 21.080 hybrid contribution 0.117 2.356 0.732 2.470 sum -0.900 -17.891 6.513 19.060 Atomic orbital electron populations 1.69830 1.06873 1.28169 1.50106 1.25713 0.95843 1.02299 0.93222 0.85576 0.78432 0.78661 0.78714 1.20055 1.20540 1.19564 1.21795 0.93499 0.92156 1.52704 0.92746 1.19798 0.87517 0.91339 0.81986 1.86156 1.51359 1.56406 1.45677 1.23043 1.00838 0.94171 0.99272 1.22711 0.94531 0.93555 0.96361 1.63508 1.08881 1.20267 1.32463 1.22389 0.96804 0.93391 0.95504 1.22550 0.98725 0.91206 0.87682 1.88036 1.74628 1.34881 1.33477 1.22224 0.90596 0.85163 0.99204 1.21587 1.00428 0.94452 0.98791 1.21489 0.94574 0.95930 1.02773 1.21586 0.96240 0.98937 0.99184 1.21486 0.99363 0.94040 1.00119 1.21997 0.95777 0.98522 1.01459 1.22814 0.94884 0.90063 0.98225 0.92218 0.78142 0.92600 0.93526 0.92624 0.92111 0.92465 0.90379 0.93723 0.90866 0.91354 0.91361 0.92827 0.90446 0.90829 0.92697 0.90250 0.90944 0.91474 0.92877 0.93263 0.92980 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.70 10.75 21.45 0.23 -49.47 16 2 C 0.03 1.61 5.29 84.66 0.45 2.06 16 3 Si 0.96 42.70 29.54 68.60 2.03 44.72 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.56 -31.08 8.27 25.60 0.21 -30.87 16 8 H 0.05 2.97 7.79 -2.91 -0.02 2.95 16 9 C 0.23 12.12 0.87 -10.16 -0.01 12.11 16 10 O -0.59 -32.73 13.16 -148.98 -1.96 -34.69 16 11 C -0.13 -6.38 5.37 31.77 0.17 -6.21 16 12 C 0.06 2.25 6.14 86.64 0.53 2.78 16 13 N -0.53 -21.23 5.11 -885.52 -4.52 -25.76 16 14 C 0.05 1.48 4.92 86.30 0.42 1.91 16 15 C 0.08 2.01 5.85 71.98 0.42 2.44 16 16 O -0.39 -11.88 9.94 -148.98 -1.48 -13.36 16 17 C 0.09 1.98 2.61 30.59 0.08 2.06 16 18 C -0.11 -2.35 5.57 30.60 0.17 -2.18 16 19 C -0.11 -1.61 5.92 30.60 0.18 -1.43 16 20 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 21 C -0.11 -1.90 5.92 30.59 0.18 -1.72 16 22 C -0.14 -3.25 5.54 30.59 0.17 -3.08 16 23 C 0.07 3.09 5.86 86.77 0.51 3.60 16 24 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 25 H 0.37 20.74 7.56 -74.06 -0.56 20.18 16 26 H 0.06 2.85 7.54 -2.38 -0.02 2.83 16 27 H 0.05 2.24 8.04 -2.39 -0.02 2.22 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 2.08 6.94 -2.38 -0.02 2.06 16 30 H 0.06 1.66 7.96 -2.39 -0.02 1.64 16 31 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 32 H 0.04 1.20 6.77 -2.39 -0.02 1.19 16 33 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 34 H 0.07 1.34 7.79 -2.39 -0.02 1.32 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.05 1.31 7.87 -2.39 -0.02 1.29 16 44 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.05 2.25 7.70 -2.38 -0.02 2.23 16 46 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -61.27 353.84 -1.66 -62.94 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.37 Total: 35.78 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 3.67 Total: -20.17 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -4.29 Total: -75.23 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -3.44 Total: -48.05 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -61.27 -1.66 -62.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886265167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.337 kcal (2) G-P(sol) polarization free energy of solvation -61.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds