Wall clock time and date at job start Tue Mar 31 2020 05:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99825 * 2 1 4 4 H 1.48502 * 109.47347 * 274.99678 * 3 2 1 5 5 H 1.48499 * 109.47313 * 35.00027 * 3 2 1 6 6 H 1.48501 * 109.47289 * 154.99722 * 3 2 1 7 7 C 1.37880 * 120.00484 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00516 * 184.96463 * 7 2 1 9 9 C 1.50703 * 119.99658 * 4.95649 * 7 2 1 10 10 O 1.42896 * 110.27515 * 296.93129 * 9 7 2 11 11 C 1.54599 * 110.30521 * 59.13060 * 9 7 2 12 12 C 1.54934 * 102.92094 * 140.87414 * 11 9 7 13 13 N 1.48534 * 103.22674 * 322.57939 * 12 11 9 14 14 C 1.46897 * 111.00186 * 159.72127 * 13 12 11 15 15 C 1.53001 * 109.47031 * 52.60415 * 14 13 12 16 16 O 1.42908 * 109.47054 * 65.00206 * 15 14 13 17 17 C 1.42895 * 114.00074 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47162 * 90.00038 * 17 16 15 19 19 C 1.53001 * 109.47187 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.46818 * 299.99758 * 19 18 17 21 21 C 1.53005 * 109.47256 * 60.00154 * 20 19 18 22 22 C 1.53000 * 109.46811 * 209.99776 * 17 16 15 23 23 C 1.47901 * 105.81716 * 39.20999 * 13 12 11 24 24 H 0.96993 * 120.00361 * 0.02562 * 1 2 3 25 25 H 0.96702 * 114.00078 * 57.91335 * 10 9 7 26 26 H 1.09000 * 110.72242 * 259.22786 * 11 9 7 27 27 H 1.08995 * 110.72922 * 22.33451 * 11 9 7 28 28 H 1.09004 * 110.66823 * 204.14905 * 12 11 9 29 29 H 1.08992 * 110.67259 * 81.01789 * 12 11 9 30 30 H 1.08999 * 109.47730 * 292.61049 * 14 13 12 31 31 H 1.09002 * 109.47605 * 172.60262 * 14 13 12 32 32 H 1.08998 * 109.47449 * 305.00370 * 15 14 13 33 33 H 1.09000 * 109.47669 * 184.99899 * 15 14 13 34 34 H 1.08993 * 109.46994 * 329.99724 * 17 16 15 35 35 H 1.08997 * 109.47407 * 299.99845 * 18 17 16 36 36 H 1.09003 * 109.47416 * 59.99943 * 18 17 16 37 37 H 1.09003 * 109.47255 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47495 * 59.99687 * 19 18 17 39 39 H 1.09003 * 109.47297 * 299.99735 * 20 19 18 40 40 H 1.09005 * 109.47069 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.46719 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.46594 * 59.99802 * 21 20 19 43 43 H 1.09003 * 109.47297 * 299.99769 * 22 17 16 44 44 H 1.08998 * 109.47239 * 60.00520 * 22 17 16 45 45 H 1.09000 * 109.91866 * 94.02597 * 23 13 12 46 46 H 1.09006 * 109.91939 * 215.31395 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1075 -1.3948 5 1 1.5033 2.6199 0.8030 6 1 3.5954 1.4121 0.5918 7 6 2.0046 -1.1940 -0.0005 8 1 3.0816 -1.1958 0.0804 9 6 1.2554 -2.4967 -0.1139 10 8 0.3950 -2.6727 1.0133 11 6 0.4387 -2.5334 -1.4260 12 6 0.6072 -3.9995 -1.8981 13 7 2.0127 -4.3140 -1.5348 14 6 2.2241 -5.7656 -1.4567 15 6 1.7407 -6.4217 -2.7516 16 8 2.5525 -5.9796 -3.8415 17 6 2.1827 -6.5359 -5.1047 18 6 1.1501 -5.6300 -5.7783 19 6 0.7547 -6.2253 -7.1311 20 6 1.9941 -6.3359 -8.0214 21 6 3.0268 -7.2419 -7.3478 22 6 3.4219 -6.6471 -5.9953 23 6 2.2427 -3.6735 -0.2217 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2490 -1.9611 1.1316 26 1 -0.6104 -2.3083 -1.2338 27 1 0.8527 -1.8397 -2.1577 28 1 0.4622 -4.0758 -2.9757 29 1 -0.0831 -4.6560 -1.3686 30 1 1.6636 -6.1696 -0.6136 31 1 3.2856 -5.9714 -1.3194 32 1 0.7031 -6.1428 -2.9350 33 1 1.8149 -7.5053 -2.6596 34 1 1.7537 -7.5264 -4.9538 35 1 0.2674 -5.5507 -5.1439 36 1 1.5792 -4.6394 -5.9292 37 1 0.0194 -5.5796 -7.6113 38 1 0.3257 -7.2160 -6.9808 39 1 2.4230 -5.3452 -8.1719 40 1 1.7125 -6.7605 -8.9851 41 1 3.9094 -7.3211 -7.9823 42 1 2.5977 -8.2326 -7.1974 43 1 3.8510 -5.6565 -6.1461 44 1 4.1575 -7.2926 -5.5154 45 1 2.0558 -4.3895 0.5786 46 1 3.2670 -3.3054 -0.1623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886265168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:38 Heat of formation + Delta-G solvation = -113.689229 kcal Electronic energy + Delta-G solvation = -23515.410668 eV Core-core repulsion = 20210.927956 eV Total energy + Delta-G solvation = -3304.482712 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.28135 -38.30470 -36.44861 -34.65944 -32.06007 -31.10528 -30.87445 -29.40970 -28.15515 -27.04052 -24.22412 -22.87820 -22.36595 -22.08460 -20.07283 -19.72319 -19.31821 -17.02658 -16.76232 -15.69889 -15.60866 -14.87273 -14.72839 -14.51042 -14.33827 -14.12004 -13.70460 -13.62101 -13.31997 -12.78973 -12.53084 -12.36875 -12.18949 -11.99052 -11.60531 -11.50296 -11.28280 -11.20913 -11.05271 -10.91499 -10.81303 -10.56954 -10.49304 -10.45447 -10.36754 -10.32509 -10.17965 -9.84586 -9.24943 -9.07406 -8.51236 -8.04688 -7.63886 -6.14509 -4.19837 3.28126 3.35112 3.39619 3.75128 4.37501 4.59015 4.62226 4.65875 4.83250 5.03887 5.09931 5.14683 5.22021 5.31036 5.37054 5.39320 5.42205 5.47074 5.54578 5.64374 5.77737 5.83730 5.86420 5.94337 5.98788 6.03848 6.08169 6.10188 6.13850 6.20608 6.29383 6.32911 6.33667 6.48379 6.59015 7.01143 7.13926 7.38173 7.45013 7.59813 7.76167 7.82320 7.92117 8.23699 8.82308 9.45719 9.56876 10.93188 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.022086 B = 0.003804 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.485101 B = 7358.905556 C = 7847.025492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.242 3.758 10 O -0.596 6.596 11 C -0.115 4.115 12 C 0.032 3.968 13 N -0.502 5.502 14 C 0.047 3.953 15 C 0.066 3.934 16 O -0.361 6.361 17 C 0.090 3.910 18 C -0.142 4.142 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.116 4.116 23 C 0.053 3.947 24 H 0.265 0.735 25 H 0.382 0.618 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.034 0.966 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.438 -14.003 -12.441 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.202 3.798 10 O -0.405 6.405 11 C -0.154 4.154 12 C -0.095 4.095 13 N -0.227 5.227 14 C -0.081 4.081 15 C -0.011 4.011 16 O -0.280 6.280 17 C 0.032 3.968 18 C -0.179 4.179 19 C -0.154 4.154 20 C -0.160 4.160 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.074 4.074 24 H 0.075 0.925 25 H 0.232 0.768 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.052 0.948 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.170 -14.114 -12.730 19.130 hybrid contribution -0.756 0.926 0.479 1.288 sum 1.415 -13.188 -12.251 18.056 Atomic orbital electron populations 1.69685 1.05952 1.27283 1.50992 1.25008 0.94966 0.99413 0.93966 0.86465 0.79959 0.82864 0.78031 1.20574 1.21235 1.19767 1.21712 0.93847 0.90698 1.50287 0.92000 1.19379 0.86244 0.91360 0.82786 1.86090 1.51965 1.51771 1.50723 1.22917 1.00580 0.92173 0.99692 1.23281 0.88484 0.98643 0.99115 1.64844 1.22868 1.07258 1.27708 1.22304 1.01695 0.90064 0.94079 1.22622 0.94703 0.96399 0.87338 1.88075 1.55895 1.69553 1.14482 1.22028 0.94888 0.95359 0.84554 1.22038 0.99256 1.00539 0.96111 1.21499 0.97522 1.00878 0.95538 1.21578 0.95906 1.00291 0.98199 1.21491 0.98971 0.98892 0.95959 1.21560 0.97018 1.02271 0.94491 1.22888 1.00550 0.96022 0.87959 0.92474 0.76768 0.91864 0.91453 0.91772 0.95325 0.93839 0.90386 0.93269 0.93823 0.93024 0.91890 0.90766 0.91795 0.92261 0.91689 0.92136 0.91646 0.92138 0.90914 0.91548 0.94819 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.46 10.89 55.43 0.60 -23.86 16 2 C 0.07 1.84 5.22 -17.82 -0.09 1.75 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.58 8.12 -34.44 -0.28 -14.86 16 8 H 0.06 1.72 7.36 -52.49 -0.39 1.33 16 9 C 0.24 6.21 0.99 -90.41 -0.09 6.12 16 10 O -0.60 -15.87 12.94 -35.23 -0.46 -16.32 16 11 C -0.11 -2.76 5.31 -24.87 -0.13 -2.89 16 12 C 0.03 0.66 5.09 -1.90 -0.01 0.65 16 13 N -0.50 -10.25 5.34 -230.46 -1.23 -11.48 16 14 C 0.05 0.78 5.41 -3.82 -0.02 0.76 16 15 C 0.07 0.95 5.57 37.16 0.21 1.16 16 16 O -0.36 -5.57 9.93 -35.23 -0.35 -5.92 16 17 C 0.09 1.09 2.61 -26.73 -0.07 1.02 16 18 C -0.14 -1.67 5.54 -26.73 -0.15 -1.82 16 19 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 20 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 21 C -0.12 -0.98 5.92 -26.75 -0.16 -1.13 16 22 C -0.12 -1.23 5.57 -26.76 -0.15 -1.38 16 23 C 0.05 1.21 6.17 -2.76 -0.02 1.20 16 24 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.38 10.28 7.29 45.56 0.33 10.61 16 26 H 0.06 1.56 7.99 -51.93 -0.41 1.15 16 27 H 0.07 1.73 7.85 -51.93 -0.41 1.33 16 28 H 0.06 1.22 7.56 -51.93 -0.39 0.83 16 29 H 0.03 0.57 8.01 -51.93 -0.42 0.15 16 30 H 0.04 0.70 7.81 -51.93 -0.41 0.29 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.71 6.25 -51.93 -0.32 0.39 16 33 H 0.04 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.05 0.57 7.79 -51.93 -0.40 0.17 16 35 H 0.06 0.78 7.87 -51.93 -0.41 0.37 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.03 0.75 7.39 -51.93 -0.38 0.37 16 46 H 0.08 1.81 7.39 -51.93 -0.38 1.43 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -28.56 351.71 -10.21 -38.77 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.78 Total: 9.22 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.28 Total: -11.88 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.63 Total: -35.33 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.81 Total: -22.25 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.56 -10.21 -38.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886265168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.919 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds