Wall clock time and date at job start Tue Mar 31 2020 06:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47361 * 2 1 4 4 C 1.53005 * 109.47281 * 204.16392 * 3 2 1 5 5 C 1.52999 * 109.47472 * 84.16320 * 3 2 1 6 6 N 1.46500 * 109.47178 * 324.16389 * 3 2 1 7 7 C 1.46499 * 120.00098 * 133.16763 * 6 3 2 8 8 C 1.50697 * 109.47236 * 266.70951 * 7 6 3 9 9 H 1.08003 * 119.99695 * 4.89278 * 8 7 6 10 10 C 1.37875 * 120.00033 * 184.89296 * 8 7 6 11 11 N 1.31507 * 120.00213 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99842 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47290 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47075 * 120.00155 * 12 10 8 15 15 H 1.48505 * 109.47280 * 239.99809 * 12 10 8 16 16 C 1.34779 * 119.99937 * 313.16544 * 6 3 2 17 17 O 1.21280 * 120.00006 * 187.70827 * 16 6 3 18 18 C 1.50705 * 119.99850 * 7.71339 * 16 6 3 19 19 H 1.09000 * 110.32732 * 49.78989 * 18 16 6 20 20 C 1.54477 * 110.37126 * 287.41965 * 18 16 6 21 21 C 1.54803 * 104.08766 * 217.20207 * 20 18 16 22 22 H 1.08998 * 110.55420 * 118.56978 * 21 20 18 23 23 C 1.52997 * 110.59836 * 241.37375 * 21 20 18 24 24 C 1.54480 * 103.92447 * 359.97438 * 21 20 18 25 25 O 1.44423 * 110.36794 * 172.03603 * 18 16 6 26 26 H 1.09003 * 109.46738 * 62.08371 * 1 2 3 27 27 H 1.08998 * 109.47613 * 182.08704 * 1 2 3 28 28 H 1.09000 * 109.46893 * 302.08515 * 1 2 3 29 29 H 1.09005 * 109.47201 * 239.99585 * 2 1 3 30 30 H 1.08999 * 109.47184 * 120.00053 * 2 1 3 31 31 H 1.09000 * 109.47136 * 206.05216 * 4 3 2 32 32 H 1.09001 * 109.47197 * 326.05487 * 4 3 2 33 33 H 1.09000 * 109.47085 * 86.05008 * 4 3 2 34 34 H 1.08999 * 109.47086 * 301.47945 * 5 3 2 35 35 H 1.09012 * 109.46671 * 61.47127 * 5 3 2 36 36 H 1.08997 * 109.47369 * 181.47209 * 5 3 2 37 37 H 1.09004 * 109.47139 * 26.71123 * 7 6 3 38 38 H 1.09001 * 109.46878 * 146.70741 * 7 6 3 39 39 H 0.97000 * 120.00515 * 179.97438 * 11 10 8 40 40 H 1.09001 * 110.50925 * 335.83229 * 20 18 16 41 41 H 1.08997 * 110.50884 * 98.54751 * 20 18 16 42 42 H 1.09006 * 109.46813 * 175.98259 * 23 21 20 43 43 H 1.08994 * 109.47416 * 295.97832 * 23 21 20 44 44 H 1.09002 * 109.47536 * 55.98575 * 23 21 20 45 45 H 1.09004 * 110.37296 * 265.12118 * 24 21 20 46 46 H 1.09005 * 110.37352 * 142.89268 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.4509 1.4845 -0.5905 5 6 2.0718 1.9722 1.4350 6 7 1.1471 2.2761 -0.8087 7 6 0.6839 3.5669 -0.2934 8 6 -0.6419 3.3846 0.3995 9 1 -1.0563 2.3947 0.5205 10 6 -1.3257 4.4817 0.8790 11 7 -0.8208 5.6870 0.7321 12 14 -2.9694 4.2557 1.7373 13 1 -3.3147 2.8119 1.7734 14 1 -2.8795 4.7786 3.1244 15 1 -4.0210 4.9973 0.9960 16 6 0.7519 1.8556 -2.0267 17 8 0.1295 2.6011 -2.7531 18 6 1.0834 0.4590 -2.4858 19 1 0.8047 -0.2669 -1.7219 20 6 2.5880 0.3446 -2.8166 21 6 2.6327 -0.5909 -4.0491 22 1 3.0653 -0.0745 -4.9060 23 6 3.4236 -1.8617 -3.7320 24 6 1.1487 -0.9290 -4.3134 25 8 0.4089 0.1651 -3.7286 26 1 -0.3633 0.4812 -0.9081 27 1 -0.3634 -1.0269 0.0374 28 1 -0.3633 0.5459 0.8707 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9856 2.3472 -0.1929 32 1 3.9839 0.5720 -0.3235 33 1 3.3883 1.5643 -1.6758 34 1 1.0715 1.9178 1.8646 35 1 2.7563 1.3678 2.0304 36 1 2.4103 3.0083 1.4324 37 1 1.4136 3.9582 0.4154 38 1 0.5684 4.2678 -1.1202 39 1 -1.3020 6.4589 1.0691 40 1 2.9999 1.3227 -3.0648 41 1 3.1300 -0.0984 -1.9811 42 1 3.3834 -2.5373 -4.5865 43 1 4.4612 -1.6013 -3.5233 44 1 2.9896 -2.3518 -2.8605 45 1 0.8818 -1.8689 -3.8303 46 1 0.9575 -0.9862 -5.3850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890023751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:25 Heat of formation + Delta-G solvation = -26.016455 kcal Electronic energy + Delta-G solvation = -25364.982110 eV Core-core repulsion = 22064.301175 eV Total energy + Delta-G solvation = -3300.680935 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08253 -38.41110 -36.67280 -33.55250 -33.36989 -31.79421 -30.90311 -30.20806 -27.30463 -26.48905 -26.13120 -23.75544 -23.20620 -22.18451 -20.74548 -20.37639 -18.12395 -16.74158 -16.60167 -16.11524 -15.64472 -14.94312 -14.80692 -14.46156 -14.19114 -13.96789 -13.75050 -13.35295 -13.08166 -12.83553 -12.58067 -12.28312 -12.21472 -12.08015 -11.85020 -11.66441 -11.46879 -11.29925 -11.09254 -10.98523 -10.88822 -10.80538 -10.72296 -10.39784 -10.34019 -10.27812 -10.00379 -9.86814 -9.50415 -9.39205 -8.67802 -8.37279 -7.55787 -5.99276 -4.02767 3.31509 3.33234 3.40527 3.44429 3.68515 4.27322 4.46210 4.53989 4.65486 4.89454 4.95712 5.01170 5.18096 5.21369 5.28808 5.33601 5.35492 5.44444 5.49906 5.57616 5.61439 5.72287 5.75507 5.80436 5.84923 5.88085 5.92446 6.03549 6.10500 6.16184 6.17172 6.24254 6.32998 6.39565 6.59381 6.73570 6.88179 6.94358 7.20304 7.54580 7.65851 7.99100 8.29983 8.49402 8.97591 9.18046 9.61886 11.08791 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.023034 B = 0.005928 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.293356 B = 4722.556297 C = 5076.916094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.154 4.154 3 C 0.166 3.834 4 C -0.194 4.194 5 C -0.146 4.146 6 N -0.586 5.586 7 C 0.243 3.757 8 C -0.520 4.520 9 H 0.063 0.937 10 C 0.061 3.939 11 N -0.894 5.894 12 Si 0.893 3.107 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.517 3.483 17 O -0.524 6.524 18 C 0.016 3.984 19 H 0.132 0.868 20 C -0.153 4.153 21 C -0.131 4.131 22 H 0.083 0.917 23 C -0.142 4.142 24 C 0.045 3.955 25 O -0.348 6.348 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.037 0.963 38 H 0.042 0.958 39 H 0.261 0.739 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.835 -15.660 -3.159 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.192 4.192 3 C 0.080 3.920 4 C -0.252 4.252 5 C -0.203 4.203 6 N -0.320 5.320 7 C 0.124 3.876 8 C -0.559 4.559 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.721 3.279 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.303 3.697 17 O -0.399 6.399 18 C -0.044 4.044 19 H 0.149 0.851 20 C -0.190 4.190 21 C -0.150 4.150 22 H 0.101 0.899 23 C -0.200 4.200 24 C -0.032 4.032 25 O -0.266 6.266 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.261 -14.924 -3.587 18.463 hybrid contribution -0.743 -0.085 0.615 0.969 sum 9.518 -15.010 -2.972 18.020 Atomic orbital electron populations 1.22250 0.94746 1.00852 1.04652 1.22599 0.97445 0.96670 1.02458 1.20316 0.88956 0.90096 0.92602 1.23221 0.96440 1.01719 1.03778 1.22108 1.03378 1.01284 0.93521 1.48299 1.46822 1.21905 1.14972 1.19346 0.94458 0.78752 0.94999 1.21539 1.04663 0.93450 1.36275 0.91936 1.24916 0.97678 0.95088 0.96358 1.69940 1.38817 0.98033 1.46552 0.86529 0.84184 0.78217 0.79010 1.19820 1.21101 1.20986 1.19739 0.80338 0.87588 0.82053 1.90685 1.39750 1.55848 1.53638 1.24585 0.91990 0.98109 0.89685 0.85104 1.23808 0.96496 1.00375 0.98285 1.22672 0.96692 0.96749 0.98841 0.89883 1.21804 1.00003 0.96494 1.01653 1.23512 0.89851 0.90624 0.99261 1.89279 1.51181 1.51484 1.34619 0.91140 0.93421 0.90762 0.90404 0.90956 0.92328 0.92126 0.89741 0.90335 0.93005 0.91374 0.94511 0.93982 0.92913 0.89694 0.88304 0.92408 0.92223 0.92325 0.92354 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 7.59 37.16 0.28 -2.44 16 2 C -0.15 -2.08 4.28 -26.74 -0.11 -2.20 16 3 C 0.17 2.64 0.75 -131.82 -0.10 2.55 16 4 C -0.19 -2.54 7.42 37.16 0.28 -2.26 16 5 C -0.15 -2.36 7.17 37.16 0.27 -2.09 16 6 N -0.59 -12.26 1.74 -160.18 -0.28 -12.54 16 7 C 0.24 6.25 4.55 -5.20 -0.02 6.22 16 8 C -0.52 -14.32 8.53 -34.44 -0.29 -14.61 16 9 H 0.06 1.70 5.99 -52.48 -0.31 1.38 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 12 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 16 C 0.52 11.40 4.89 -10.98 -0.05 11.35 16 17 O -0.52 -14.38 16.17 -13.52 -0.22 -14.60 16 18 C 0.02 0.28 1.99 -27.11 -0.05 0.22 16 19 H 0.13 2.00 2.79 -51.93 -0.14 1.86 16 20 C -0.15 -1.97 3.62 -25.01 -0.09 -2.06 16 21 C -0.13 -1.41 3.73 -88.89 -0.33 -1.74 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 23 C -0.14 -1.11 8.95 37.16 0.33 -0.78 16 24 C 0.04 0.56 7.18 37.93 0.27 0.83 16 25 O -0.35 -6.34 10.92 -54.31 -0.59 -6.93 16 26 H 0.07 1.36 4.31 -51.93 -0.22 1.14 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.34 6.20 -51.93 -0.32 1.02 16 29 H 0.08 0.92 3.47 -51.93 -0.18 0.74 16 30 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 31 H 0.06 0.78 7.89 -51.93 -0.41 0.37 16 32 H 0.06 0.61 7.48 -51.93 -0.39 0.22 16 33 H 0.08 1.14 3.23 -51.93 -0.17 0.97 16 34 H 0.08 1.44 6.70 -51.93 -0.35 1.10 16 35 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.07 1.20 6.35 -51.93 -0.33 0.87 16 37 H 0.04 0.94 5.82 -51.93 -0.30 0.64 16 38 H 0.04 1.26 7.43 -51.93 -0.39 0.88 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.08 1.21 6.29 -51.93 -0.33 0.88 16 41 H 0.10 1.05 3.98 -51.93 -0.21 0.84 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -33.55 328.11 -7.12 -40.67 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.96 Total: 2.73 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 0.27 Total: -5.36 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.46 Total: -38.33 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.81 Total: -21.53 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.55 -7.12 -40.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890023751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.658 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds