Wall clock time and date at job start Tue Mar 31 2020 06:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47361 * 2 1 4 4 C 1.53005 * 109.47281 * 204.16392 * 3 2 1 5 5 C 1.52999 * 109.47472 * 84.16320 * 3 2 1 6 6 N 1.46500 * 109.47178 * 324.16389 * 3 2 1 7 7 C 1.46499 * 120.00098 * 133.16763 * 6 3 2 8 8 C 1.50697 * 109.47236 * 266.70951 * 7 6 3 9 9 H 1.08003 * 119.99695 * 4.89278 * 8 7 6 10 10 C 1.37875 * 120.00033 * 184.89296 * 8 7 6 11 11 N 1.31507 * 120.00213 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99842 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47290 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47075 * 120.00155 * 12 10 8 15 15 H 1.48505 * 109.47280 * 239.99809 * 12 10 8 16 16 C 1.34779 * 119.99937 * 313.16544 * 6 3 2 17 17 O 1.21280 * 120.00006 * 187.70827 * 16 6 3 18 18 C 1.50705 * 119.99850 * 7.71339 * 16 6 3 19 19 H 1.09000 * 110.32732 * 49.78989 * 18 16 6 20 20 C 1.54477 * 110.37126 * 287.41965 * 18 16 6 21 21 C 1.54803 * 104.08766 * 217.20207 * 20 18 16 22 22 H 1.08998 * 110.55420 * 118.56978 * 21 20 18 23 23 C 1.52997 * 110.59836 * 241.37375 * 21 20 18 24 24 C 1.54480 * 103.92447 * 359.97438 * 21 20 18 25 25 O 1.44423 * 110.36794 * 172.03603 * 18 16 6 26 26 H 1.09003 * 109.46738 * 62.08371 * 1 2 3 27 27 H 1.08998 * 109.47613 * 182.08704 * 1 2 3 28 28 H 1.09000 * 109.46893 * 302.08515 * 1 2 3 29 29 H 1.09005 * 109.47201 * 239.99585 * 2 1 3 30 30 H 1.08999 * 109.47184 * 120.00053 * 2 1 3 31 31 H 1.09000 * 109.47136 * 206.05216 * 4 3 2 32 32 H 1.09001 * 109.47197 * 326.05487 * 4 3 2 33 33 H 1.09000 * 109.47085 * 86.05008 * 4 3 2 34 34 H 1.08999 * 109.47086 * 301.47945 * 5 3 2 35 35 H 1.09012 * 109.46671 * 61.47127 * 5 3 2 36 36 H 1.08997 * 109.47369 * 181.47209 * 5 3 2 37 37 H 1.09004 * 109.47139 * 26.71123 * 7 6 3 38 38 H 1.09001 * 109.46878 * 146.70741 * 7 6 3 39 39 H 0.97000 * 120.00515 * 179.97438 * 11 10 8 40 40 H 1.09001 * 110.50925 * 335.83229 * 20 18 16 41 41 H 1.08997 * 110.50884 * 98.54751 * 20 18 16 42 42 H 1.09006 * 109.46813 * 175.98259 * 23 21 20 43 43 H 1.08994 * 109.47416 * 295.97832 * 23 21 20 44 44 H 1.09002 * 109.47536 * 55.98575 * 23 21 20 45 45 H 1.09004 * 110.37296 * 265.12118 * 24 21 20 46 46 H 1.09005 * 110.37352 * 142.89268 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.4509 1.4845 -0.5905 5 6 2.0718 1.9722 1.4350 6 7 1.1471 2.2761 -0.8087 7 6 0.6839 3.5669 -0.2934 8 6 -0.6419 3.3846 0.3995 9 1 -1.0563 2.3947 0.5205 10 6 -1.3257 4.4817 0.8790 11 7 -0.8208 5.6870 0.7321 12 14 -2.9694 4.2557 1.7373 13 1 -3.3147 2.8119 1.7734 14 1 -2.8795 4.7786 3.1244 15 1 -4.0210 4.9973 0.9960 16 6 0.7519 1.8556 -2.0267 17 8 0.1295 2.6011 -2.7531 18 6 1.0834 0.4590 -2.4858 19 1 0.8047 -0.2669 -1.7219 20 6 2.5880 0.3446 -2.8166 21 6 2.6327 -0.5909 -4.0491 22 1 3.0653 -0.0745 -4.9060 23 6 3.4236 -1.8617 -3.7320 24 6 1.1487 -0.9290 -4.3134 25 8 0.4089 0.1651 -3.7286 26 1 -0.3633 0.4812 -0.9081 27 1 -0.3634 -1.0269 0.0374 28 1 -0.3633 0.5459 0.8707 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9856 2.3472 -0.1929 32 1 3.9839 0.5720 -0.3235 33 1 3.3883 1.5643 -1.6758 34 1 1.0715 1.9178 1.8646 35 1 2.7563 1.3678 2.0304 36 1 2.4103 3.0083 1.4324 37 1 1.4136 3.9582 0.4154 38 1 0.5684 4.2678 -1.1202 39 1 -1.3020 6.4589 1.0691 40 1 2.9999 1.3227 -3.0648 41 1 3.1300 -0.0984 -1.9811 42 1 3.3834 -2.5373 -4.5865 43 1 4.4612 -1.6013 -3.5233 44 1 2.9896 -2.3518 -2.8605 45 1 0.8818 -1.8689 -3.8303 46 1 0.9575 -0.9862 -5.3850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890023751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:24 Heat of formation + Delta-G solvation = -48.127983 kcal Electronic energy + Delta-G solvation = -25365.940938 eV Core-core repulsion = 22064.301175 eV Total energy + Delta-G solvation = -3301.639763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.45435 -39.68941 -38.33934 -35.36408 -34.52137 -33.53247 -32.33849 -31.39097 -29.11621 -27.74285 -27.00341 -25.42631 -24.43887 -23.79398 -22.12106 -21.41217 -19.58148 -18.69086 -17.90335 -17.63064 -17.02370 -16.56216 -16.29669 -16.01421 -15.61404 -15.10439 -14.98144 -14.67941 -14.33760 -14.12807 -13.90435 -13.83191 -13.60374 -13.25798 -13.10530 -12.98992 -12.89375 -12.77865 -12.61132 -12.44915 -12.38181 -12.09022 -11.98927 -11.77861 -11.74805 -11.65551 -11.40910 -11.34359 -10.97660 -10.69526 -10.59449 -10.33859 -9.35688 -8.18469 -6.30346 1.33276 1.36780 1.47163 1.72559 2.16090 2.39563 3.09012 3.14399 3.41287 3.62630 3.79376 3.88195 3.95514 4.01406 4.15839 4.23149 4.31838 4.38630 4.57182 4.58554 4.65540 4.72859 4.77455 4.79701 4.85211 4.86524 4.90562 4.99825 5.03150 5.12093 5.15292 5.17357 5.19137 5.27642 5.29114 5.41505 5.44728 5.50063 5.61809 5.69385 5.82348 5.97045 6.13679 6.75798 6.86323 7.32825 7.51315 8.89039 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.023034 B = 0.005928 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.293356 B = 4722.556297 C = 5076.916094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.147 4.147 3 C 0.152 3.848 4 C -0.192 4.192 5 C -0.142 4.142 6 N -0.584 5.584 7 C 0.260 3.740 8 C -0.525 4.525 9 H 0.063 0.937 10 C 0.005 3.995 11 N -0.931 5.931 12 Si 0.959 3.041 13 H -0.265 1.265 14 H -0.269 1.269 15 H -0.288 1.288 16 C 0.505 3.495 17 O -0.599 6.599 18 C 0.027 3.973 19 H 0.154 0.846 20 C -0.148 4.148 21 C -0.123 4.123 22 H 0.081 0.919 23 C -0.138 4.138 24 C 0.034 3.966 25 O -0.395 6.395 26 H 0.031 0.969 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.041 0.959 37 H 0.035 0.965 38 H -0.016 1.016 39 H 0.263 0.737 40 H 0.066 0.934 41 H 0.133 0.867 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.702 -19.816 -2.059 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.184 4.184 3 C 0.069 3.931 4 C -0.249 4.249 5 C -0.200 4.200 6 N -0.316 5.316 7 C 0.139 3.861 8 C -0.563 4.563 9 H 0.081 0.919 10 C -0.193 4.193 11 N -0.572 5.572 12 Si 0.784 3.216 13 H -0.189 1.189 14 H -0.194 1.194 15 H -0.214 1.214 16 C 0.294 3.706 17 O -0.480 6.480 18 C -0.033 4.033 19 H 0.170 0.830 20 C -0.185 4.185 21 C -0.142 4.142 22 H 0.099 0.901 23 C -0.195 4.195 24 C -0.042 4.042 25 O -0.314 6.314 26 H 0.050 0.950 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.070 0.930 32 H 0.127 0.873 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.002 0.998 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.177 -19.134 -2.456 22.813 hybrid contribution -1.315 1.221 0.241 1.810 sum 10.863 -17.914 -2.215 21.067 Atomic orbital electron populations 1.22216 0.97033 1.01917 1.01411 1.22611 0.95247 0.94945 1.05574 1.20840 0.89750 0.90861 0.91694 1.23221 0.94418 1.03996 1.03268 1.22078 1.02714 1.00770 0.94392 1.48303 1.47085 1.20794 1.15405 1.18790 0.94318 0.80535 0.92498 1.21788 1.05328 0.93448 1.35763 0.91935 1.25806 1.01427 0.94807 0.97252 1.70069 1.40472 0.98859 1.47782 0.85491 0.79323 0.78430 0.78338 1.18939 1.19433 1.21404 1.20852 0.78838 0.89463 0.81438 1.90629 1.43234 1.58362 1.55817 1.24574 0.94536 0.94120 0.90029 0.82982 1.23860 0.93474 1.00499 1.00633 1.22660 0.96021 0.97852 0.97630 0.90083 1.21806 1.00112 0.94756 1.02790 1.23874 0.90492 0.89916 0.99883 1.89245 1.53061 1.53759 1.35376 0.95007 0.90169 0.93395 0.87860 0.86932 0.92955 0.87295 0.90209 0.93097 0.88460 0.93965 0.94770 0.99773 0.92762 0.91575 0.84965 0.91123 0.90906 0.91082 0.89853 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.17 7.59 71.98 0.55 -4.63 16 2 C -0.15 -3.38 4.28 30.59 0.13 -3.24 16 3 C 0.15 4.59 0.75 3.60 0.00 4.60 16 4 C -0.19 -4.41 7.42 71.98 0.53 -3.88 16 5 C -0.14 -4.44 7.17 71.98 0.52 -3.92 16 6 N -0.58 -25.39 1.74 -779.08 -1.36 -26.74 16 7 C 0.26 14.32 4.55 85.63 0.39 14.71 16 8 C -0.52 -30.36 8.53 25.60 0.22 -30.14 16 9 H 0.06 3.54 5.99 -2.91 -0.02 3.53 16 10 C 0.01 0.31 5.46 84.66 0.46 0.77 16 11 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 12 Si 0.96 46.19 29.54 68.60 2.03 48.22 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 15 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 16 C 0.51 23.36 4.89 87.66 0.43 23.79 16 17 O -0.60 -35.66 16.17 15.21 0.25 -35.42 16 18 C 0.03 0.88 1.99 30.35 0.06 0.94 16 19 H 0.15 4.28 2.79 -2.39 -0.01 4.27 16 20 C -0.15 -3.43 3.62 31.71 0.11 -3.31 16 21 C -0.12 -2.25 3.73 -9.68 -0.04 -2.28 16 22 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 23 C -0.14 -1.42 8.95 71.98 0.64 -0.78 16 24 C 0.03 0.78 7.18 72.49 0.52 1.30 16 25 O -0.40 -14.46 10.92 -130.74 -1.43 -15.89 16 26 H 0.03 1.23 4.31 -2.39 -0.01 1.22 16 27 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.05 1.71 6.20 -2.39 -0.01 1.69 16 29 H 0.10 1.88 3.47 -2.38 -0.01 1.87 16 30 H 0.11 1.82 7.92 -2.39 -0.02 1.80 16 31 H 0.05 1.28 7.89 -2.39 -0.02 1.26 16 32 H 0.11 1.49 7.48 -2.39 -0.02 1.48 16 33 H 0.08 1.98 3.23 -2.39 -0.01 1.97 16 34 H 0.05 1.86 6.70 -2.39 -0.02 1.85 16 35 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.04 1.51 6.35 -2.39 -0.02 1.50 16 37 H 0.03 1.88 5.82 -2.39 -0.01 1.87 16 38 H -0.02 -1.05 7.43 -2.39 -0.02 -1.07 16 39 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 40 H 0.07 1.82 6.29 -2.39 -0.02 1.80 16 41 H 0.13 2.10 3.98 -2.39 -0.01 2.09 16 42 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.08 1.45 7.87 -2.38 -0.02 1.43 16 46 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -82.84 328.11 5.29 -77.54 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.99 Total: 16.00 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 4.53 Total: -6.08 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -1.07 Total: -84.37 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -1.18 Total: -51.31 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -82.84 5.29 -77.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890023751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.416 kcal (2) G-P(sol) polarization free energy of solvation -82.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds