Wall clock time and date at job start Tue Mar 31 2020 06:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46722 * 2 1 4 4 C 1.53004 * 109.47545 * 295.31416 * 3 2 1 5 5 C 1.52998 * 109.47059 * 175.30920 * 3 2 1 6 6 N 1.46506 * 109.47159 * 55.30954 * 3 2 1 7 7 C 1.46498 * 120.00108 * 237.86061 * 6 3 2 8 8 C 1.50705 * 109.46830 * 269.99745 * 7 6 3 9 9 H 1.07998 * 120.00044 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99558 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00109 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99580 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47269 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47179 * 120.00296 * 12 10 8 15 15 H 1.48505 * 109.46534 * 239.99793 * 12 10 8 16 16 C 1.34780 * 119.99617 * 57.85924 * 6 3 2 17 17 O 1.21282 * 119.99943 * 4.69115 * 16 6 3 18 18 C 1.50699 * 119.99635 * 184.68644 * 16 6 3 19 19 H 1.08998 * 109.99262 * 308.22135 * 18 16 6 20 20 C 1.54103 * 109.87954 * 69.30913 * 18 16 6 21 21 C 1.54807 * 104.18767 * 121.45140 * 20 18 16 22 22 H 1.09003 * 110.90449 * 262.67751 * 21 20 18 23 23 C 1.52995 * 110.90714 * 139.11584 * 21 20 18 24 24 C 1.54991 * 102.09375 * 20.88068 * 21 20 18 25 25 O 1.43746 * 109.87629 * 187.13623 * 18 16 6 26 26 H 1.08997 * 109.47657 * 300.00032 * 1 2 3 27 27 H 1.09006 * 109.47564 * 60.00370 * 1 2 3 28 28 H 1.09007 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47124 * 240.00509 * 2 1 3 30 30 H 1.08994 * 109.46966 * 119.99929 * 2 1 3 31 31 H 1.08997 * 109.47469 * 180.02562 * 4 3 2 32 32 H 1.09001 * 109.46391 * 300.00301 * 4 3 2 33 33 H 1.09000 * 109.47324 * 59.99700 * 4 3 2 34 34 H 1.08998 * 109.47431 * 298.68006 * 5 3 2 35 35 H 1.08997 * 109.46946 * 58.68461 * 5 3 2 36 36 H 1.09003 * 109.47166 * 178.67975 * 5 3 2 37 37 H 1.08995 * 109.47473 * 29.99891 * 7 6 3 38 38 H 1.08995 * 109.46932 * 150.00143 * 7 6 3 39 39 H 0.97002 * 119.99556 * 180.02562 * 11 10 8 40 40 H 1.08996 * 110.48370 * 240.13358 * 20 18 16 41 41 H 1.09001 * 110.48189 * 2.64076 * 20 18 16 42 42 H 1.09009 * 109.47319 * 59.99394 * 23 21 20 43 43 H 1.08994 * 109.47561 * 179.97438 * 23 21 20 44 44 H 1.08998 * 109.47341 * 299.99891 * 23 21 20 45 45 H 1.09004 * 110.61541 * 204.47838 * 24 21 20 46 46 H 1.08994 * 110.61807 * 81.47840 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6284 2.1290 -1.3040 5 6 3.5653 1.4442 0.1180 6 7 1.4615 2.1650 1.1357 7 6 0.6722 3.3778 0.9072 8 6 1.5809 4.5800 0.9293 9 1 2.6403 4.4531 1.0965 10 6 1.0596 5.8417 0.7362 11 7 -0.2304 5.9961 0.5322 12 14 2.1859 7.3317 0.7629 13 1 3.5828 6.8919 1.0086 14 1 2.1098 8.0333 -0.5437 15 1 1.7602 8.2545 1.8458 16 6 1.6555 1.7136 2.3908 17 8 2.3782 0.7597 2.5873 18 6 0.9743 2.3944 3.5500 19 1 1.1654 3.4670 3.5168 20 6 -0.5429 2.1305 3.4947 21 6 -0.8568 1.4370 4.8427 22 1 -0.8887 0.3539 4.7247 23 6 -2.1688 1.9582 5.4323 24 6 0.3507 1.8631 5.7159 25 8 1.4578 1.8499 4.7893 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9921 3.1566 -1.3042 32 1 2.0587 1.5915 -2.1490 33 1 0.5416 2.1278 -1.3880 34 1 3.8576 0.9762 1.0580 35 1 3.9947 0.8868 -0.7145 36 1 3.9305 2.4710 0.0944 37 1 0.1790 3.3130 -0.0626 38 1 -0.0788 3.4756 1.6910 39 1 -0.5971 6.8837 0.3959 40 1 -1.0906 3.0692 3.4118 41 1 -0.7856 1.4733 2.6596 42 1 -2.9844 1.7583 4.7371 43 1 -2.3671 1.4552 6.3787 44 1 -2.0902 3.0322 5.6008 45 1 0.5148 1.1459 6.5202 46 1 0.1990 2.8646 6.1184 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890023752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:28 Heat of formation + Delta-G solvation = -93.056553 kcal Electronic energy + Delta-G solvation = -25002.590061 eV Core-core repulsion = 21699.002049 eV Total energy + Delta-G solvation = -3303.588012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17781 -38.60108 -36.03652 -33.77898 -33.28404 -32.06391 -30.31759 -29.09743 -27.69277 -26.25812 -26.12311 -23.51391 -23.17903 -22.31451 -20.37955 -20.17634 -17.76474 -16.75722 -16.14357 -15.77632 -15.55478 -15.07227 -14.65728 -14.47272 -14.15407 -13.81162 -13.66394 -13.25259 -12.81661 -12.73072 -12.58845 -12.30074 -12.00401 -11.84993 -11.75754 -11.49193 -11.35622 -11.15114 -11.10694 -11.05402 -10.97604 -10.68691 -10.65587 -10.44068 -10.42059 -10.28536 -10.19614 -9.96552 -9.61487 -9.46781 -8.61795 -8.42440 -7.60165 -6.18788 -4.24967 3.20641 3.29771 3.33102 3.42075 3.69800 4.30461 4.43633 4.76108 4.92753 5.12078 5.13942 5.22587 5.37198 5.45806 5.49857 5.54314 5.65553 5.73194 5.77884 5.79295 5.91402 5.94665 6.03387 6.07212 6.12602 6.16314 6.20882 6.24962 6.31005 6.32390 6.41220 6.50022 6.54965 6.64764 6.70955 6.88591 6.94164 7.00520 7.16100 7.26781 7.67241 7.78591 8.07767 8.41792 8.82778 9.11752 9.42914 10.87243 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011684 B = 0.008270 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.965245 B = 3385.107521 C = 4692.297096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.182 3.818 4 C -0.150 4.150 5 C -0.160 4.160 6 N -0.583 5.583 7 C 0.226 3.774 8 C -0.533 4.533 9 H 0.061 0.939 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.521 3.479 17 O -0.553 6.553 18 C 0.063 3.937 19 H 0.105 0.895 20 C -0.134 4.134 21 C -0.127 4.127 22 H 0.082 0.918 23 C -0.140 4.140 24 C 0.050 3.950 25 O -0.354 6.354 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.264 0.736 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 -7.487 3.176 8.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.097 3.903 4 C -0.207 4.207 5 C -0.218 4.218 6 N -0.315 5.315 7 C 0.106 3.894 8 C -0.571 4.571 9 H 0.079 0.921 10 C -0.137 4.137 11 N -0.530 5.530 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.209 1.209 16 C 0.308 3.692 17 O -0.432 6.432 18 C 0.002 3.998 19 H 0.122 0.878 20 C -0.172 4.172 21 C -0.146 4.146 22 H 0.101 0.899 23 C -0.197 4.197 24 C -0.027 4.027 25 O -0.272 6.272 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.691 -7.902 3.258 8.961 hybrid contribution 0.280 1.239 -0.144 1.279 sum -2.411 -6.663 3.114 7.740 Atomic orbital electron populations 1.21746 0.96167 1.00344 1.02001 1.21931 0.95988 0.96780 1.02527 1.20163 0.92901 0.90750 0.86465 1.22123 1.01761 1.02163 0.94653 1.22195 0.95101 1.02099 1.02393 1.48219 1.51973 1.27433 1.03891 1.19638 0.91020 0.80035 0.98716 1.21561 0.94886 0.90948 1.49738 0.92077 1.24911 0.95043 0.98874 0.94878 1.69923 1.11256 1.23254 1.48524 0.86533 0.81154 0.82676 0.77721 1.19657 1.20903 1.20897 1.20124 0.81498 0.83641 0.83914 1.90536 1.38700 1.29064 1.84922 1.22674 0.93187 0.99268 0.84634 0.87762 1.22962 0.94499 1.02108 0.97647 1.22741 0.95703 1.00883 0.95292 0.89943 1.21709 0.96245 1.01311 1.00475 1.23617 0.85569 1.00678 0.92835 1.88941 1.32824 1.84686 1.20775 0.92792 0.92756 0.93737 0.92182 0.90243 0.90184 0.92969 0.91992 0.90829 0.93184 0.92394 0.93731 0.94268 0.92675 0.89159 0.90480 0.92223 0.92612 0.92144 0.89349 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.45 37.16 0.35 -1.92 16 2 C -0.13 -2.25 4.65 -26.73 -0.12 -2.37 16 3 C 0.18 3.37 0.73 -131.82 -0.10 3.28 16 4 C -0.15 -2.63 6.95 37.16 0.26 -2.37 16 5 C -0.16 -2.96 8.45 37.16 0.31 -2.65 16 6 N -0.58 -11.99 1.52 -160.18 -0.24 -12.23 16 7 C 0.23 5.09 4.16 -5.19 -0.02 5.07 16 8 C -0.53 -13.42 8.52 -34.44 -0.29 -13.71 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -23.65 13.29 55.43 0.74 -22.91 16 12 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 13 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C 0.52 11.17 5.90 -10.98 -0.06 11.10 16 17 O -0.55 -12.89 12.81 -13.93 -0.18 -13.06 16 18 C 0.06 1.24 2.95 -27.31 -0.08 1.16 16 19 H 0.10 2.21 7.54 -51.93 -0.39 1.82 16 20 C -0.13 -2.21 4.64 -25.20 -0.12 -2.32 16 21 C -0.13 -1.74 3.72 -88.62 -0.33 -2.07 16 22 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 23 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 24 C 0.05 0.72 7.18 38.21 0.27 1.00 16 25 O -0.35 -6.92 10.74 -54.71 -0.59 -7.50 16 26 H 0.05 0.92 5.92 -51.93 -0.31 0.61 16 27 H 0.05 0.81 6.56 -51.93 -0.34 0.47 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.50 6.32 -51.93 -0.33 1.17 16 31 H 0.08 1.59 7.13 -51.93 -0.37 1.22 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.09 5.39 -51.93 -0.28 0.81 16 34 H 0.07 1.50 6.14 -51.93 -0.32 1.18 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.04 1.05 5.74 -51.93 -0.30 0.75 16 38 H 0.04 0.90 4.93 -51.93 -0.26 0.64 16 39 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 40 H 0.09 1.48 7.36 -51.93 -0.38 1.10 16 41 H 0.08 1.29 6.40 -51.93 -0.33 0.96 16 42 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.06 0.80 8.01 -51.93 -0.42 0.39 16 LS Contribution 346.09 15.07 5.22 5.22 Total: -1.00 -28.31 346.09 -7.56 -35.87 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.79 Total: 4.70 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 0.31 Total: -5.40 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.49 Total: -35.15 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.77 Total: -20.57 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.31 -7.56 -35.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890023752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.191 kcal (2) G-P(sol) polarization free energy of solvation -28.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds