Wall clock time and date at job start Tue Mar 31 2020 06:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47300 * 2 1 4 4 C 1.53008 * 109.47153 * 171.19940 * 3 2 1 5 5 C 1.53001 * 109.47022 * 51.20029 * 3 2 1 6 6 N 1.46497 * 109.47358 * 291.19647 * 3 2 1 7 7 C 1.46504 * 120.00067 * 324.55634 * 6 3 2 8 8 C 1.50702 * 109.46756 * 272.38115 * 7 6 3 9 9 H 1.07998 * 119.99914 * 354.87248 * 8 7 6 10 10 C 1.37877 * 119.99711 * 174.86885 * 8 7 6 11 11 N 1.31510 * 120.00328 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99732 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46597 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.46946 * 299.99846 * 12 10 8 15 15 H 1.48495 * 109.47096 * 59.99860 * 12 10 8 16 16 C 1.34780 * 120.00140 * 144.54773 * 6 3 2 17 17 O 1.21283 * 120.00253 * 198.43779 * 16 6 3 18 18 C 1.50707 * 119.99673 * 18.44062 * 16 6 3 19 19 H 1.09001 * 110.27075 * 295.59379 * 18 16 6 20 20 C 1.54944 * 110.30849 * 57.68771 * 18 16 6 21 21 C 1.55417 * 100.89194 * 155.28829 * 20 18 16 22 22 H 1.08994 * 110.75746 * 84.17049 * 21 20 18 23 23 C 1.52999 * 111.05527 * 207.67303 * 21 20 18 24 24 C 1.54379 * 102.30795 * 325.98840 * 21 20 18 25 25 O 1.43241 * 107.58869 * 21.28507 * 24 21 20 26 26 H 1.09006 * 109.46900 * 64.67712 * 1 2 3 27 27 H 1.08996 * 109.47631 * 184.68147 * 1 2 3 28 28 H 1.08999 * 109.47276 * 304.68501 * 1 2 3 29 29 H 1.09001 * 109.47365 * 240.00001 * 2 1 3 30 30 H 1.09001 * 109.47212 * 120.00068 * 2 1 3 31 31 H 1.09002 * 109.46996 * 150.86552 * 4 3 2 32 32 H 1.09001 * 109.46865 * 270.86487 * 4 3 2 33 33 H 1.08996 * 109.46820 * 30.86072 * 4 3 2 34 34 H 1.08998 * 109.47021 * 278.83503 * 5 3 2 35 35 H 1.09000 * 109.47012 * 38.84110 * 5 3 2 36 36 H 1.09004 * 109.46734 * 158.84115 * 5 3 2 37 37 H 1.08993 * 109.47152 * 152.38544 * 7 6 3 38 38 H 1.09001 * 109.46975 * 32.37986 * 7 6 3 39 39 H 0.97003 * 119.99822 * 0.02562 * 11 10 8 40 40 H 1.09004 * 111.12500 * 273.27708 * 20 18 16 41 41 H 1.09000 * 111.13067 * 37.43636 * 20 18 16 42 42 H 1.09003 * 109.47031 * 174.47465 * 23 21 20 43 43 H 1.08999 * 109.47224 * 294.47036 * 23 21 20 44 44 H 1.08994 * 109.47080 * 54.47197 * 23 21 20 45 45 H 1.09000 * 109.82944 * 261.77529 * 24 21 20 46 46 H 1.08997 * 109.91065 * 140.84415 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5541 1.4481 0.2207 5 6 1.3578 2.2246 1.1242 6 7 1.7320 2.0694 -1.2877 7 6 1.7824 1.2770 -2.5189 8 6 3.1841 1.2969 -3.0720 9 1 3.9400 1.9110 -2.6054 10 6 3.5013 0.5311 -4.1738 11 7 2.5810 -0.2172 -4.7417 12 14 5.2391 0.5552 -4.8590 13 1 5.3194 -0.3463 -6.0362 14 1 5.5897 1.9384 -5.2704 15 1 6.1891 0.0934 -3.8153 16 6 1.4021 3.3752 -1.3398 17 8 0.8322 3.8183 -2.3144 18 6 1.7413 4.2846 -0.1869 19 1 1.1947 3.9821 0.7062 20 6 3.2669 4.2640 0.0834 21 6 3.4622 5.6446 0.7697 22 1 3.2434 5.5806 1.8355 23 6 4.8772 6.1784 0.5379 24 6 2.4184 6.5224 0.0463 25 8 1.4358 5.6478 -0.5208 26 1 -0.3633 0.4396 -0.9290 27 1 -0.3634 -1.0242 0.0839 28 1 -0.3634 0.5848 0.8450 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9891 2.3204 -0.2671 32 1 3.7653 1.4863 1.2894 33 1 3.9863 0.5416 -0.2028 34 1 0.3690 2.5448 0.7959 35 1 1.2602 1.5871 2.0029 36 1 1.9584 3.0991 1.3746 37 1 1.0964 1.7009 -3.2522 38 1 1.4921 0.2491 -2.3015 39 1 1.6787 -0.2300 -4.3856 40 1 3.5360 3.4483 0.7546 41 1 3.8302 4.2058 -0.8480 42 1 4.9562 7.1869 0.9441 43 1 5.5968 5.5288 1.0360 44 1 5.0867 6.2001 -0.5316 45 1 2.9022 7.0967 -0.7438 46 1 1.9449 7.1986 0.7579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890023754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:33 Heat of formation + Delta-G solvation = -47.065210 kcal Electronic energy + Delta-G solvation = -25196.765387 eV Core-core repulsion = 21895.171709 eV Total energy + Delta-G solvation = -3301.593678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.82151 -38.50609 -36.82977 -33.57489 -33.52867 -32.05030 -31.31714 -29.27955 -27.73245 -26.36269 -26.19883 -23.66472 -23.26640 -22.29313 -20.72583 -20.21167 -18.32930 -17.17084 -16.68990 -16.20442 -15.26122 -15.05785 -15.03164 -14.40142 -14.18560 -13.75998 -13.68632 -13.49868 -13.23719 -12.92946 -12.88331 -12.47887 -12.31088 -12.16283 -11.84409 -11.68361 -11.47989 -11.35598 -11.10828 -11.02770 -10.94455 -10.84049 -10.76276 -10.66358 -10.52431 -10.18519 -10.11704 -9.97203 -9.37993 -9.08359 -8.71004 -8.37070 -7.53597 -6.36800 -4.08968 3.28013 3.40264 3.44498 3.51477 3.62099 4.18214 4.41685 4.52446 4.70147 4.84584 4.95844 5.09119 5.16643 5.17807 5.25994 5.31136 5.35730 5.39614 5.53987 5.56823 5.63155 5.64260 5.67297 5.78141 5.85755 5.86578 5.93622 5.96284 6.04097 6.07838 6.12436 6.21789 6.27582 6.35486 6.53232 6.56369 6.75582 6.91388 7.13330 7.23740 7.51644 8.06902 8.35930 8.44860 8.79042 9.03454 9.60308 10.99606 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014157 B = 0.007248 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.339290 B = 3861.986704 C = 4704.319581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.173 3.827 4 C -0.171 4.171 5 C -0.189 4.189 6 N -0.587 5.587 7 C 0.231 3.769 8 C -0.603 4.603 9 H 0.051 0.949 10 C 0.020 3.980 11 N -0.910 5.910 12 Si 1.067 2.933 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.288 1.288 16 C 0.516 3.484 17 O -0.528 6.528 18 C 0.030 3.970 19 H 0.124 0.876 20 C -0.157 4.157 21 C -0.129 4.129 22 H 0.084 0.916 23 C -0.141 4.141 24 C 0.053 3.947 25 O -0.360 6.360 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.031 0.969 38 H 0.033 0.967 39 H 0.268 0.732 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.210 6.055 16.633 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.087 3.913 4 C -0.229 4.229 5 C -0.246 4.246 6 N -0.321 5.321 7 C 0.112 3.888 8 C -0.642 4.642 9 H 0.070 0.930 10 C -0.185 4.185 11 N -0.546 5.546 12 Si 0.895 3.105 13 H -0.207 1.207 14 H -0.215 1.215 15 H -0.215 1.215 16 C 0.302 3.698 17 O -0.404 6.404 18 C -0.030 4.030 19 H 0.140 0.860 20 C -0.194 4.194 21 C -0.148 4.148 22 H 0.102 0.898 23 C -0.198 4.198 24 C -0.024 4.024 25 O -0.278 6.278 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.680 5.724 14.762 16.058 hybrid contribution -0.667 0.596 1.294 1.573 sum 2.013 6.320 16.056 17.372 Atomic orbital electron populations 1.21813 0.95977 1.01007 1.02100 1.21905 0.96081 0.95298 1.03193 1.20236 0.94577 0.93122 0.83357 1.22709 0.95508 1.04622 1.00027 1.23223 1.01293 1.01204 0.98859 1.47994 1.67695 1.08426 1.08014 1.19427 0.98004 0.90475 0.80921 1.22268 0.95736 1.30033 1.16148 0.93041 1.25734 1.05461 0.93183 0.94076 1.70796 1.04039 1.38356 1.41404 0.83566 0.74220 0.76307 0.76372 1.20714 1.21520 1.21477 1.20107 0.79145 0.82711 0.87821 1.90647 1.39555 1.75267 1.34949 1.24376 0.96788 0.83727 0.98086 0.85990 1.23993 0.94961 0.97732 1.02714 1.22772 0.96369 0.95344 1.00266 0.89779 1.21712 0.94942 1.00741 1.02437 1.23233 0.89304 0.92973 0.96926 1.88520 1.48157 1.14810 1.76313 0.92327 0.93147 0.93001 0.89494 0.91545 0.90413 0.92993 0.91349 0.91519 0.91272 0.89906 0.95080 0.94910 0.92182 0.87235 0.89350 0.92400 0.92099 0.92070 0.91419 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.30 37.15 0.35 -1.89 16 2 C -0.13 -1.97 4.27 -26.73 -0.11 -2.09 16 3 C 0.17 2.76 0.54 -131.82 -0.07 2.69 16 4 C -0.17 -2.56 7.11 37.16 0.26 -2.30 16 5 C -0.19 -2.37 5.17 37.16 0.19 -2.18 16 6 N -0.59 -12.23 1.99 -160.17 -0.32 -12.55 16 7 C 0.23 5.88 3.96 -5.19 -0.02 5.86 16 8 C -0.60 -16.58 9.00 -34.44 -0.31 -16.89 16 9 H 0.05 1.41 7.67 -52.49 -0.40 1.01 16 10 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 11 N -0.91 -27.33 13.65 55.43 0.76 -26.57 16 12 Si 1.07 25.17 29.90 -169.99 -5.08 20.09 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 16 C 0.52 11.36 6.27 -10.98 -0.07 11.29 16 17 O -0.53 -14.33 16.14 -13.70 -0.22 -14.55 16 18 C 0.03 0.51 2.68 -26.85 -0.07 0.44 16 19 H 0.12 1.74 3.89 -51.97 -0.20 1.54 16 20 C -0.16 -2.21 3.40 -24.42 -0.08 -2.29 16 21 C -0.13 -1.44 3.58 -88.61 -0.32 -1.76 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 23 C -0.14 -1.37 9.15 37.16 0.34 -1.03 16 24 C 0.05 0.70 7.40 37.88 0.28 0.98 16 25 O -0.36 -6.58 10.61 -54.49 -0.58 -7.16 16 26 H 0.06 1.02 7.42 -51.93 -0.39 0.63 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.66 6.44 -51.93 -0.33 0.33 16 29 H 0.09 1.63 6.00 -51.93 -0.31 1.32 16 30 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 31 H 0.08 1.25 4.71 -51.93 -0.24 1.01 16 32 H 0.05 0.59 7.68 -51.93 -0.40 0.19 16 33 H 0.07 1.14 7.85 -51.93 -0.41 0.73 16 34 H 0.07 0.91 6.21 -51.93 -0.32 0.59 16 35 H 0.07 0.70 7.85 -51.93 -0.41 0.29 16 36 H 0.08 0.93 3.52 -51.93 -0.18 0.75 16 37 H 0.03 0.92 7.23 -51.93 -0.38 0.54 16 38 H 0.03 0.83 4.91 -51.93 -0.25 0.57 16 39 H 0.27 8.03 7.19 -40.82 -0.29 7.74 16 40 H 0.11 1.33 3.71 -51.93 -0.19 1.14 16 41 H 0.09 1.49 7.57 -51.93 -0.39 1.10 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 45 H 0.07 0.90 7.82 -51.93 -0.41 0.49 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -33.84 335.52 -7.39 -41.22 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.27 Total: 3.18 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 0.27 Total: -8.71 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.44 Total: -39.12 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.80 Total: -21.71 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.84 -7.39 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890023754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.840 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds