Wall clock time and date at job start Tue Mar 31 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.49196 * 2 1 4 4 C 1.53086 * 109.48110 * 239.96835 * 2 1 3 5 5 C 1.53182 * 109.16105 * 182.41233 * 4 2 1 6 6 C 1.53172 * 109.03903 * 56.98377 * 5 4 2 7 7 C 1.53095 * 109.16161 * 303.01887 * 6 5 4 8 8 H 1.08999 * 109.49094 * 297.62086 * 7 6 5 9 9 C 1.52993 * 109.48321 * 177.59403 * 7 6 5 10 10 N 1.46496 * 109.47551 * 180.02562 * 9 7 6 11 11 C 1.34777 * 120.00258 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00166 * 359.97438 * 11 10 9 13 13 C 1.50706 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.53002 * 109.46925 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47340 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47232 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99963 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99795 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99974 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99629 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47142 * 60.00574 * 20 18 16 22 22 H 1.48506 * 109.46657 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47444 * 300.00415 * 20 18 16 24 24 O 1.42901 * 109.41816 * 57.60647 * 7 6 5 25 25 H 1.09005 * 109.47540 * 299.97277 * 1 2 3 26 26 H 1.09000 * 109.47031 * 59.96987 * 1 2 3 27 27 H 1.09000 * 109.47467 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46953 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.46660 * 300.03034 * 3 2 1 30 30 H 1.09007 * 109.46718 * 60.02499 * 3 2 1 31 31 H 1.09005 * 109.52335 * 302.31681 * 4 2 1 32 32 H 1.08997 * 109.52256 * 62.44192 * 4 2 1 33 33 H 1.09008 * 109.53875 * 176.84992 * 5 4 2 34 34 H 1.08996 * 109.54036 * 297.02151 * 5 4 2 35 35 H 1.08995 * 109.52044 * 183.11353 * 6 5 4 36 36 H 1.08998 * 109.52761 * 62.92027 * 6 5 4 37 37 H 1.09000 * 109.47250 * 60.05586 * 9 7 6 38 38 H 1.09004 * 109.46862 * 300.05609 * 9 7 6 39 39 H 0.96999 * 119.99694 * 359.97438 * 10 9 7 40 40 H 1.09000 * 109.47318 * 299.99141 * 13 11 10 41 41 H 1.09000 * 109.47161 * 59.99772 * 13 11 10 42 42 H 1.09004 * 109.46930 * 299.99901 * 14 13 11 43 43 H 1.09004 * 109.47059 * 59.99503 * 14 13 11 44 44 H 1.09004 * 109.46785 * 299.99692 * 15 14 13 45 45 H 1.09000 * 109.47196 * 59.99588 * 15 14 13 46 46 H 0.97002 * 119.99803 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5711 -0.7710 -1.2119 6 6 4.0175 -1.4602 0.0810 7 6 3.4306 -0.7094 1.2792 8 1 3.8191 0.3089 1.2962 9 6 3.8225 -1.4265 2.5726 10 7 3.2602 -0.7083 3.7189 11 6 3.4776 -1.1603 4.9699 12 8 4.1382 -2.1619 5.1466 13 6 2.8996 -0.4210 6.1492 14 6 3.2914 -1.1383 7.4426 15 6 2.7042 -0.3882 8.6398 16 6 3.0896 -1.0951 9.9137 17 1 3.6935 -1.9896 9.8735 18 6 2.6722 -0.5992 11.1307 19 7 1.9374 0.4904 11.1797 20 14 3.1494 -1.4758 12.7097 21 1 4.6293 -1.5145 12.8266 22 1 2.5795 -0.7476 13.8717 23 1 2.6184 -2.8623 12.6860 24 8 2.0065 -0.6742 1.1665 25 1 -0.3634 0.5134 0.8902 26 1 -0.3633 0.5143 -0.8897 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1304 1.4419 -0.0005 29 1 1.6769 1.9564 -0.8897 30 1 1.6776 1.9561 0.8903 31 1 1.6442 -1.7375 -1.2708 32 1 1.7139 -0.1850 -2.1398 33 1 3.9391 -1.3328 -2.0705 34 1 3.9689 0.2433 -1.2423 35 1 5.1057 -1.4499 0.1422 36 1 3.6612 -2.4902 0.0866 37 1 4.9088 -1.4533 2.6584 38 1 3.4342 -2.4449 2.5553 39 1 2.7322 0.0930 3.5776 40 1 3.2885 0.5971 6.1659 41 1 1.8133 -0.3938 6.0640 42 1 2.9023 -2.1564 7.4257 43 1 4.3778 -1.1660 7.5279 44 1 3.0930 0.6300 8.6569 45 1 1.6179 -0.3609 8.5542 46 1 1.6434 0.8391 12.0358 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890122076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:21 Heat of formation + Delta-G solvation = -122.415102 kcal Electronic energy + Delta-G solvation = -22458.014570 eV Core-core repulsion = 19153.153476 eV Total energy + Delta-G solvation = -3304.861094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53308 -39.20808 -35.45859 -34.10212 -34.01767 -33.29464 -31.95791 -29.59906 -27.95536 -27.69495 -26.09844 -23.80855 -22.61206 -22.04184 -20.50547 -19.75033 -19.47676 -17.01062 -16.75387 -16.09431 -15.94797 -15.73589 -15.44322 -15.21794 -14.50761 -14.36707 -14.03442 -13.79869 -13.42159 -13.07684 -13.00620 -12.85462 -12.41579 -12.31733 -12.22307 -12.19185 -11.99920 -11.75641 -11.48115 -11.35351 -11.24016 -11.10199 -10.73810 -10.56391 -10.50181 -10.42689 -9.72996 -9.60759 -9.57558 -9.19851 -8.96451 -8.90859 -8.27262 -5.93252 -3.94446 3.02778 3.23622 3.39794 3.40853 3.42866 3.47296 4.26911 4.34876 4.40478 4.50289 4.53417 4.64560 4.78284 4.88874 4.93386 5.11910 5.15861 5.27489 5.28281 5.40272 5.40855 5.42622 5.45385 5.50507 5.55509 5.62586 5.68004 5.75596 5.77679 5.82136 5.82928 5.90940 6.01198 6.34550 6.56558 6.80380 6.98968 7.00793 7.23218 7.71869 7.76863 7.89976 8.07958 8.51954 8.56531 9.12542 9.69123 11.18296 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034988 B = 0.002541 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.093669 B =11016.209150 C =11518.554999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.111 3.889 3 C -0.181 4.181 4 C -0.143 4.143 5 C -0.122 4.122 6 C -0.148 4.148 7 C 0.078 3.922 8 H 0.067 0.933 9 C 0.129 3.871 10 N -0.734 5.734 11 C 0.512 3.488 12 O -0.542 6.542 13 C -0.138 4.138 14 C -0.095 4.095 15 C 0.020 3.980 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 O -0.365 6.365 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.402 0.598 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.015 0.985 45 H 0.016 0.984 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 2.178 -29.668 29.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.072 3.928 3 C -0.238 4.238 4 C -0.181 4.181 5 C -0.160 4.160 6 C -0.186 4.186 7 C 0.020 3.980 8 H 0.085 0.915 9 C 0.005 3.995 10 N -0.387 5.387 11 C 0.300 3.700 12 O -0.418 6.418 13 C -0.178 4.178 14 C -0.133 4.133 15 C -0.017 4.017 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.202 1.202 24 O -0.284 6.284 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.236 0.764 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.137 1.474 -29.273 29.310 hybrid contribution 0.132 0.114 0.521 0.549 sum 0.269 1.588 -28.752 28.797 Atomic orbital electron populations 1.21760 0.92292 1.02962 1.02570 1.21480 0.94838 0.91100 0.85376 1.22476 1.01920 0.96462 1.02978 1.22192 0.96093 1.01721 0.98080 1.21619 0.95668 1.01075 0.97631 1.22128 1.01321 1.00731 0.94461 1.22342 0.82271 0.99026 0.94351 0.91479 1.21300 0.98583 0.96553 0.83078 1.45990 1.56073 1.31040 1.05625 1.21249 0.79687 0.84978 0.84062 1.90667 1.39609 1.25857 1.85673 1.21831 1.01839 1.00460 0.93657 1.21439 1.00792 0.99082 0.91957 1.19129 0.96017 0.95358 0.91164 1.21253 1.32281 1.10829 0.91229 0.92634 1.25023 0.95252 0.95085 0.99178 1.69958 1.36608 1.21806 1.25450 0.86651 0.78815 0.79756 0.82749 1.20241 1.21357 1.20236 1.88031 1.20060 1.77380 1.42956 0.91544 0.91228 0.91780 0.91911 0.91551 0.91527 0.91006 0.90997 0.91367 0.91543 0.90528 0.90616 0.90391 0.91026 0.76394 0.89471 0.89374 0.92735 0.92757 0.96634 0.96605 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.85 37.15 0.33 -0.63 16 2 C 0.11 0.83 1.11 -90.58 -0.10 0.73 16 3 C -0.18 -1.16 7.93 37.16 0.29 -0.87 16 4 C -0.14 -0.91 4.92 -26.59 -0.13 -1.04 16 5 C -0.12 -0.74 5.72 -26.55 -0.15 -0.89 16 6 C -0.15 -1.06 5.42 -26.59 -0.14 -1.21 16 7 C 0.08 0.68 2.40 -26.69 -0.06 0.62 16 8 H 0.07 0.54 6.34 -51.93 -0.33 0.21 16 9 C 0.13 1.46 5.37 -4.05 -0.02 1.44 16 10 N -0.73 -9.46 5.45 -60.30 -0.33 -9.79 16 11 C 0.51 8.72 7.83 -10.98 -0.09 8.64 16 12 O -0.54 -11.33 15.98 5.56 0.09 -11.24 16 13 C -0.14 -2.40 5.70 -27.88 -0.16 -2.56 16 14 C -0.09 -2.12 4.44 -26.73 -0.12 -2.24 16 15 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 16 C -0.52 -15.29 9.11 -34.44 -0.31 -15.61 16 17 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 20 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 O -0.36 -3.60 9.62 -35.23 -0.34 -3.94 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.39 4.98 -51.93 -0.26 0.13 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 34 H 0.07 0.37 6.62 -51.93 -0.34 0.03 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.40 4.33 8.35 -40.82 -0.34 3.99 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 43 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -33.92 363.24 -8.71 -42.63 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -8.42 Total: -2.00 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -0.90 Total: -11.68 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.41 Total: -36.59 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.25 Total: -15.18 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.92 -8.71 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890122076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.782 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds