Wall clock time and date at job start Tue Mar 31 2020 05:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53010 * 109.48666 * 2 1 4 4 C 1.53088 * 109.48204 * 239.97408 * 2 1 3 5 5 C 1.53187 * 109.16077 * 297.62299 * 4 2 1 6 6 C 1.53171 * 109.04433 * 303.02903 * 5 4 2 7 7 C 1.53091 * 109.16628 * 56.96166 * 6 5 4 8 8 H 1.08999 * 109.47956 * 62.39801 * 7 6 5 9 9 C 1.53006 * 109.47923 * 182.41928 * 7 6 5 10 10 N 1.46500 * 109.46998 * 184.97733 * 9 7 6 11 11 C 1.34769 * 120.00237 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99854 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00461 * 180.02562 * 11 10 9 14 14 C 1.52996 * 109.47592 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47473 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47429 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31523 * 119.99981 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00300 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47057 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47025 * 120.00050 * 20 18 16 23 23 H 1.48508 * 109.47034 * 240.00048 * 20 18 16 24 24 O 1.42901 * 109.48223 * 120.02516 * 2 1 3 25 25 H 1.08996 * 109.47079 * 299.97182 * 1 2 3 26 26 H 1.09001 * 109.46972 * 59.97292 * 1 2 3 27 27 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46745 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46755 * 300.02677 * 3 2 1 30 30 H 1.08994 * 109.47099 * 60.03325 * 3 2 1 31 31 H 1.09000 * 109.52610 * 57.52684 * 4 2 1 32 32 H 1.09002 * 109.52139 * 177.72013 * 4 2 1 33 33 H 1.08997 * 109.53972 * 62.88994 * 5 4 2 34 34 H 1.08999 * 109.53951 * 183.06136 * 5 4 2 35 35 H 1.09005 * 109.51359 * 297.05924 * 6 5 4 36 36 H 1.09000 * 109.53314 * 176.87605 * 6 5 4 37 37 H 1.08993 * 109.46955 * 304.97959 * 9 7 6 38 38 H 1.09000 * 109.47050 * 64.97788 * 9 7 6 39 39 H 0.97010 * 119.99909 * 359.97438 * 10 9 7 40 40 H 1.08996 * 109.47077 * 300.00146 * 13 11 10 41 41 H 1.09004 * 109.46818 * 59.99313 * 13 11 10 42 42 H 1.09004 * 109.47108 * 300.00035 * 14 13 11 43 43 H 1.09000 * 109.46870 * 59.99930 * 14 13 11 44 44 H 1.09004 * 109.46862 * 300.00038 * 15 14 13 45 45 H 1.09000 * 109.47250 * 60.00015 * 15 14 13 46 46 H 0.96996 * 119.99943 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4425 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 1.5758 -2.1814 -1.2121 6 6 2.0762 -2.8323 0.0809 7 6 1.5645 -2.0284 1.2791 8 1 0.4750 -2.0550 1.2960 9 6 2.1100 -2.6373 2.5725 10 7 1.5267 -1.9428 3.7230 11 6 1.8643 -2.3112 4.9746 12 8 2.6507 -3.2180 5.1485 13 6 1.2639 -1.5973 6.1582 14 6 1.8093 -2.2060 7.4516 15 6 1.1992 -1.4816 8.6531 16 6 1.7370 -2.0808 9.9270 17 1 2.4436 -2.8964 9.8839 18 6 1.3277 -1.5870 11.1476 19 7 0.4676 -0.5934 11.2001 20 14 1.9948 -2.3292 12.7267 21 1 2.9406 -3.4257 12.3973 22 1 2.7036 -1.2819 13.5050 23 1 0.8709 -2.8698 13.5329 24 8 2.0066 -0.6741 1.1664 25 1 -0.3633 0.5134 0.8902 26 1 -0.3633 0.5143 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1305 1.4421 -0.0005 29 1 1.6768 1.9565 -0.8897 30 1 1.6777 1.9562 0.8902 31 1 1.6421 -0.2357 -2.1399 32 1 3.1298 -0.6873 -1.2709 33 1 0.4868 -2.2179 -1.2408 34 1 1.9813 -2.7153 -2.0715 35 1 3.1662 -2.8403 0.0863 36 1 1.7034 -3.8547 0.1422 37 1 1.8480 -3.6944 2.6150 38 1 3.1945 -2.5305 2.5952 39 1 0.8979 -1.2173 3.5839 40 1 1.5250 -0.5400 6.1155 41 1 0.1794 -1.7048 6.1355 42 1 1.5477 -3.2633 7.4941 43 1 2.8938 -2.0988 7.4744 44 1 1.4604 -0.4242 8.6108 45 1 0.1148 -1.5892 8.6301 46 1 0.1794 -0.2463 12.0587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890122077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:24 Heat of formation + Delta-G solvation = -122.520052 kcal Electronic energy + Delta-G solvation = -22440.747022 eV Core-core repulsion = 19135.881376 eV Total energy + Delta-G solvation = -3304.865645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53193 -39.21627 -35.46215 -34.10677 -34.01897 -33.30561 -31.96187 -29.59490 -27.95723 -27.69765 -26.10106 -23.81238 -22.62011 -22.04145 -20.53147 -19.76646 -19.45612 -17.01434 -16.74933 -16.10027 -15.95028 -15.74130 -15.45247 -15.22627 -14.50819 -14.36061 -14.01819 -13.80477 -13.42883 -13.06712 -13.01684 -12.86520 -12.41779 -12.31856 -12.23344 -12.20214 -12.00115 -11.75183 -11.48367 -11.35666 -11.25157 -11.10201 -10.77964 -10.53899 -10.48200 -10.42251 -9.73865 -9.61693 -9.57357 -9.20147 -8.94806 -8.91924 -8.28274 -5.93873 -3.94911 3.02287 3.25677 3.36443 3.37975 3.43577 3.49811 4.26758 4.34855 4.40074 4.50501 4.53223 4.64454 4.78203 4.88616 4.93123 5.11957 5.15735 5.26932 5.27892 5.40011 5.40970 5.42213 5.45360 5.50039 5.55322 5.62387 5.67986 5.75333 5.77544 5.81751 5.82520 5.90637 6.01091 6.34042 6.55888 6.79981 6.99053 7.00418 7.22866 7.70633 7.76794 7.89494 8.07550 8.51597 8.55781 9.12606 9.68865 11.17753 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.035306 B = 0.002525 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.866172 B =11087.733035 C =11566.777967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.111 3.889 3 C -0.139 4.139 4 C -0.143 4.143 5 C -0.123 4.123 6 C -0.148 4.148 7 C 0.078 3.922 8 H 0.068 0.932 9 C 0.129 3.871 10 N -0.735 5.735 11 C 0.512 3.488 12 O -0.541 6.541 13 C -0.138 4.138 14 C -0.095 4.095 15 C 0.020 3.980 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 O -0.365 6.365 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.401 0.599 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.016 0.984 45 H 0.015 0.985 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.033 1.576 -29.735 29.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.072 3.928 3 C -0.196 4.196 4 C -0.181 4.181 5 C -0.160 4.160 6 C -0.186 4.186 7 C 0.020 3.980 8 H 0.085 0.915 9 C 0.005 3.995 10 N -0.388 5.388 11 C 0.300 3.700 12 O -0.418 6.418 13 C -0.178 4.178 14 C -0.133 4.133 15 C -0.017 4.017 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 O -0.284 6.284 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.235 0.765 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.421 1.103 -29.345 29.369 hybrid contribution -0.202 -0.081 0.535 0.578 sum -0.623 1.022 -28.810 28.835 Atomic orbital electron populations 1.22478 0.95737 1.02647 1.02979 1.21482 0.93101 0.92847 0.85385 1.21761 1.02028 0.93225 1.02561 1.22195 1.01890 0.95921 0.98079 1.21621 1.01098 0.95659 0.97628 1.22127 1.02399 0.99658 0.94458 1.22340 0.98470 0.82826 0.94350 0.91466 1.21293 0.99225 0.96015 0.83004 1.46017 1.48548 1.38771 1.05478 1.21246 0.81154 0.83463 0.84103 1.90669 1.34797 1.30455 1.85833 1.21832 1.01546 1.00817 0.93598 1.21436 1.00166 0.99723 0.91939 1.19140 0.95944 0.95502 0.91163 1.21325 1.25557 1.17515 0.91009 0.92526 1.25028 0.95230 0.95126 0.99217 1.69979 1.32723 1.26061 1.25059 0.86540 0.78831 0.79187 0.83502 1.19684 1.21061 1.21064 1.88039 1.73603 1.23836 1.42954 0.91528 0.91548 0.91908 0.91790 0.91226 0.91557 0.90995 0.91000 0.91551 0.91350 0.90618 0.90521 0.90342 0.90946 0.76472 0.89375 0.89467 0.92752 0.92725 0.96597 0.96617 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 7.93 37.16 0.29 -0.87 16 2 C 0.11 0.83 1.11 -90.57 -0.10 0.73 16 3 C -0.14 -0.96 8.85 37.16 0.33 -0.63 16 4 C -0.14 -0.91 4.92 -26.59 -0.13 -1.04 16 5 C -0.12 -0.74 5.72 -26.55 -0.15 -0.89 16 6 C -0.15 -1.06 5.42 -26.60 -0.14 -1.21 16 7 C 0.08 0.68 2.35 -26.68 -0.06 0.62 16 8 H 0.07 0.54 6.34 -51.93 -0.33 0.21 16 9 C 0.13 1.46 5.34 -4.04 -0.02 1.44 16 10 N -0.73 -9.42 5.50 -60.29 -0.33 -9.75 16 11 C 0.51 8.70 7.83 -10.99 -0.09 8.61 16 12 O -0.54 -11.31 15.98 5.56 0.09 -11.22 16 13 C -0.14 -2.39 5.70 -27.88 -0.16 -2.55 16 14 C -0.09 -2.12 4.44 -26.74 -0.12 -2.23 16 15 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 16 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 20 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 O -0.36 -3.62 9.82 -35.23 -0.35 -3.97 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.39 4.98 -51.93 -0.26 0.13 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.37 6.62 -51.93 -0.34 0.03 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.40 4.26 8.47 -40.82 -0.35 3.91 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 43 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 363.53 15.07 5.48 5.48 Total: -1.00 -33.99 363.53 -8.72 -42.71 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -8.42 Total: -2.12 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -0.90 Total: -11.67 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.40 Total: -36.52 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.26 Total: -15.19 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.99 -8.72 -42.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890122077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.814 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds