Wall clock time and date at job start Tue Mar 31 2020 05:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 110.43944 * 2 1 4 4 C 1.54106 * 110.48485 * 122.54544 * 2 1 3 5 5 O 1.43739 * 107.29259 * 120.70387 * 4 2 1 6 6 C 1.44381 * 106.97998 * 333.48614 * 5 4 2 7 7 H 1.08998 * 110.61568 * 281.40784 * 6 5 4 8 8 C 1.52998 * 110.62167 * 158.56266 * 6 5 4 9 9 C 1.52999 * 109.47306 * 68.58076 * 8 6 5 10 10 N 1.46497 * 109.46992 * 180.02562 * 9 8 6 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 C 1.53004 * 109.47208 * 180.27843 * 13 11 10 15 15 C 1.52997 * 109.47000 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46940 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00043 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00213 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00298 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99907 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47136 * 89.99860 * 20 18 16 22 22 H 1.48503 * 109.47098 * 209.99926 * 20 18 16 23 23 H 1.48504 * 109.46915 * 329.99781 * 20 18 16 24 24 C 1.54986 * 110.34231 * 237.30134 * 2 1 3 25 25 H 1.09002 * 109.47154 * 298.91545 * 1 2 3 26 26 H 1.09003 * 109.46405 * 58.90566 * 1 2 3 27 27 H 1.08990 * 109.47516 * 178.90612 * 1 2 3 28 28 H 1.08997 * 109.47029 * 181.08887 * 3 2 1 29 29 H 1.08997 * 109.46811 * 301.08970 * 3 2 1 30 30 H 1.08999 * 109.46577 * 61.09196 * 3 2 1 31 31 H 1.09001 * 109.87757 * 1.28221 * 4 2 1 32 32 H 1.08999 * 110.00379 * 240.19663 * 4 2 1 33 33 H 1.09009 * 109.46771 * 308.57865 * 8 6 5 34 34 H 1.08993 * 109.47193 * 188.58338 * 8 6 5 35 35 H 1.08995 * 109.46838 * 59.99948 * 9 8 6 36 36 H 1.09001 * 109.46617 * 300.00283 * 9 8 6 37 37 H 0.97000 * 120.00580 * 0.02562 * 10 9 8 38 38 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 39 39 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 40 40 H 1.09000 * 109.46887 * 300.00372 * 14 13 11 41 41 H 1.08998 * 109.46846 * 59.99549 * 14 13 11 42 42 H 1.08995 * 109.47672 * 299.99669 * 15 14 13 43 43 H 1.09001 * 109.47109 * 60.00906 * 15 14 13 44 44 H 0.96997 * 120.00396 * 180.02562 * 19 18 16 45 45 H 1.08999 * 110.84005 * 143.90299 * 24 2 1 46 46 H 1.09000 * 111.04674 * 20.24916 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0643 1.4337 0.0000 4 6 2.0693 -0.7766 1.2169 5 8 2.8753 -1.8547 0.7128 6 6 2.3780 -2.1725 -0.6049 7 1 1.4712 -2.7736 -0.5383 8 6 3.4464 -2.9006 -1.4230 9 6 3.6804 -4.2925 -0.8323 10 7 4.7038 -4.9894 -1.6153 11 6 5.0760 -6.2397 -1.2765 12 8 4.5633 -6.7880 -0.3239 13 6 6.1243 -6.9590 -2.0857 14 6 6.3548 -8.3528 -1.4980 15 6 7.4186 -9.0832 -2.3198 16 6 7.6461 -10.4558 -1.7406 17 1 7.0874 -10.7753 -0.8733 18 6 8.5674 -11.3037 -2.3178 19 7 8.7655 -12.5017 -1.8126 20 14 9.5343 -10.7509 -3.8175 21 1 10.7889 -10.0874 -3.3805 22 1 9.8645 -11.9310 -4.6562 23 1 8.7180 -9.7947 -4.6078 24 6 2.0688 -0.7851 -1.2229 25 1 -0.3633 0.4969 0.8996 26 1 -0.3632 0.5308 -0.8801 27 1 -0.3634 -1.0274 -0.0196 28 1 3.1540 1.4153 -0.0195 29 1 1.6939 1.9594 -0.8800 30 1 1.7257 1.9476 0.8996 31 1 1.2390 -1.1757 1.7996 32 1 2.6767 -0.1195 1.8393 33 1 4.3762 -2.3325 -1.3938 34 1 3.1111 -2.9959 -2.4557 35 1 2.7506 -4.8605 -0.8615 36 1 4.0157 -4.1971 0.2004 37 1 5.1142 -4.5508 -2.3770 38 1 5.7866 -7.0513 -3.1180 39 1 7.0561 -6.3942 -2.0573 40 1 6.6924 -8.2605 -0.4657 41 1 5.4230 -8.9176 -1.5263 42 1 7.0806 -9.1756 -3.3519 43 1 8.3506 -8.5186 -2.2917 44 1 9.4140 -13.0981 -2.2185 45 1 2.9754 -0.3218 -1.6123 46 1 1.3100 -0.8663 -2.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894493005.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:03 Heat of formation + Delta-G solvation = -120.436427 kcal Electronic energy + Delta-G solvation = -21704.962638 eV Core-core repulsion = 18400.187345 eV Total energy + Delta-G solvation = -3304.775293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42399 -39.39665 -35.77982 -34.83119 -34.20640 -32.47543 -31.94774 -29.11459 -27.93445 -27.80840 -26.32681 -24.30611 -22.83962 -21.56066 -20.37757 -19.87616 -19.64465 -17.07341 -16.73723 -16.44146 -16.15543 -15.70310 -15.51997 -15.29105 -14.45761 -14.36210 -14.13762 -14.03858 -13.71562 -13.31330 -13.28893 -13.08716 -12.60027 -12.45950 -12.22624 -11.99557 -11.93644 -11.75711 -11.71152 -11.43343 -11.19733 -11.09639 -10.95189 -10.89551 -10.74536 -9.98100 -9.95175 -9.79197 -9.65529 -9.35681 -9.08656 -8.97626 -8.47557 -5.97184 -3.94688 2.95165 3.27345 3.34183 3.41001 3.44174 3.44944 3.92523 4.17064 4.32052 4.46415 4.50224 4.67798 4.71610 4.82944 4.89455 5.03156 5.09270 5.15215 5.19297 5.21555 5.26592 5.35189 5.36060 5.39946 5.43915 5.54772 5.60803 5.62308 5.65252 5.65673 5.78365 5.82186 5.92217 6.17408 6.50262 6.54613 6.61941 6.74889 6.97471 7.42853 7.50625 7.62395 7.86652 8.48275 8.63371 9.09881 9.64885 11.16531 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.052109 B = 0.002108 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.210744 B =13276.604035 C =13527.419742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C -0.137 4.137 4 C 0.054 3.946 5 O -0.369 6.369 6 C 0.080 3.920 7 H 0.073 0.927 8 C -0.124 4.124 9 C 0.121 3.879 10 N -0.742 5.742 11 C 0.511 3.489 12 O -0.535 6.535 13 C -0.141 4.141 14 C -0.088 4.088 15 C -0.015 4.015 16 C -0.518 4.518 17 H 0.073 0.927 18 C 0.063 3.937 19 N -0.905 5.905 20 Si 0.882 3.118 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.141 4.141 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.398 0.602 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.262 0.738 45 H 0.080 0.920 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.931 31.494 -0.917 35.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.194 4.194 4 C -0.023 4.023 5 O -0.288 6.288 6 C 0.022 3.978 7 H 0.091 0.909 8 C -0.162 4.162 9 C -0.003 4.003 10 N -0.395 5.395 11 C 0.299 3.701 12 O -0.411 6.411 13 C -0.181 4.181 14 C -0.126 4.126 15 C -0.052 4.052 16 C -0.556 4.556 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.544 5.544 20 Si 0.709 3.291 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.179 4.179 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.231 0.769 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.033 0.967 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.036 30.811 -0.118 34.734 hybrid contribution 0.554 0.576 -1.226 1.464 sum -15.482 31.386 -1.344 35.023 Atomic orbital electron populations 1.21886 0.93422 1.02170 1.02215 1.21992 0.96459 0.96524 0.95288 1.21841 1.01150 0.94360 1.02077 1.23315 0.95011 0.88578 0.95372 1.88935 1.56284 1.52572 1.31055 1.23042 0.96418 0.95237 0.83079 0.90905 1.21830 0.99668 0.95574 0.99110 1.21241 0.91883 0.91065 0.96138 1.46121 1.42757 1.16663 1.33981 1.21161 0.83257 0.80742 0.84984 1.90697 1.55365 1.66179 1.28817 1.21866 0.97141 0.99179 0.99936 1.21265 1.00503 0.90959 0.99859 1.19612 0.93789 0.96225 0.95594 1.21177 1.22347 0.97287 1.14768 0.90929 1.25061 0.96758 0.94798 0.97115 1.69925 1.35462 1.07739 1.41284 0.86753 0.80587 0.78246 0.83504 1.20365 1.21481 1.19059 1.23326 1.01987 0.95113 0.97444 0.92223 0.92173 0.92294 0.92155 0.92290 0.92314 0.92255 0.89808 0.90289 0.89886 0.91843 0.90961 0.76854 0.89428 0.89420 0.92095 0.92100 0.96671 0.97099 0.92830 0.90145 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 8.25 37.16 0.31 -0.34 16 2 C -0.10 -0.57 0.99 -152.88 -0.15 -0.72 16 3 C -0.14 -0.64 8.28 37.16 0.31 -0.33 16 4 C 0.05 0.39 7.04 37.74 0.27 0.66 16 5 O -0.37 -3.68 10.98 -35.23 -0.39 -4.07 16 6 C 0.08 0.61 3.30 -25.68 -0.08 0.52 16 7 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 8 C -0.12 -0.93 5.09 -26.73 -0.14 -1.06 16 9 C 0.12 1.33 5.61 -4.04 -0.02 1.31 16 10 N -0.74 -8.71 5.56 -60.30 -0.33 -9.04 16 11 C 0.51 8.30 7.83 -10.98 -0.09 8.21 16 12 O -0.53 -11.11 15.98 5.55 0.09 -11.02 16 13 C -0.14 -2.26 5.70 -27.88 -0.16 -2.42 16 14 C -0.09 -1.88 4.44 -26.73 -0.12 -2.00 16 15 C -0.01 -0.36 4.04 -27.88 -0.11 -0.48 16 16 C -0.52 -15.39 9.66 -34.44 -0.33 -15.72 16 17 H 0.07 2.35 7.99 -52.49 -0.42 1.93 16 18 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 19 N -0.90 -28.71 13.96 55.43 0.77 -27.93 16 20 Si 0.88 22.03 27.47 -169.99 -4.67 17.37 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 23 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 24 C -0.14 -0.80 5.71 -24.63 -0.14 -0.94 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.41 7.69 -51.93 -0.40 0.01 16 32 H 0.08 0.56 7.70 -51.93 -0.40 0.16 16 33 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.97 7.99 -51.93 -0.41 0.55 16 37 H 0.40 3.35 8.47 -40.82 -0.35 3.00 16 38 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 41 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 42 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 43 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 44 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 45 H 0.08 0.45 7.79 -51.93 -0.40 0.04 16 46 H 0.08 0.38 7.86 -51.93 -0.41 -0.03 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -35.39 368.58 -8.18 -43.56 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -8.64 Total: -2.93 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -0.56 Total: -11.49 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.44 Total: -36.97 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.30 Total: -15.09 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.39 -8.18 -43.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894493005.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.873 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds