Wall clock time and date at job start Tue Mar 31 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 110.43674 * 2 1 4 4 C 1.54098 * 110.49215 * 122.54794 * 2 1 3 5 5 O 1.43744 * 107.29729 * 116.64457 * 4 2 1 6 6 C 1.44384 * 106.97185 * 26.51701 * 5 4 2 7 7 H 1.08999 * 110.61822 * 78.44165 * 6 5 4 8 8 C 1.53006 * 110.61682 * 201.28236 * 6 5 4 9 9 C 1.53003 * 109.46914 * 293.54543 * 8 6 5 10 10 N 1.46499 * 109.46755 * 180.02562 * 9 8 6 11 11 C 1.34782 * 119.99581 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00122 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99726 * 179.97438 * 11 10 9 14 14 C 1.53003 * 109.46900 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46911 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.46859 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99837 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99940 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99915 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99841 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47475 * 89.99633 * 20 18 16 22 22 H 1.48501 * 109.46714 * 209.99836 * 20 18 16 23 23 H 1.48504 * 109.47262 * 329.99564 * 20 18 16 24 24 C 1.54814 * 110.48742 * 237.31808 * 2 1 3 25 25 H 1.09002 * 109.47153 * 298.90448 * 1 2 3 26 26 H 1.09001 * 109.46832 * 178.90639 * 1 2 3 27 27 H 1.09004 * 109.47261 * 58.90620 * 1 2 3 28 28 H 1.09000 * 109.46864 * 59.30374 * 3 2 1 29 29 H 1.08997 * 109.47099 * 179.29843 * 3 2 1 30 30 H 1.09001 * 109.47279 * 299.30367 * 3 2 1 31 31 H 1.09004 * 109.88080 * 236.07234 * 4 2 1 32 32 H 1.09007 * 109.87565 * 357.07205 * 4 2 1 33 33 H 1.09001 * 109.46916 * 53.54388 * 8 6 5 34 34 H 1.09005 * 109.46690 * 173.54671 * 8 6 5 35 35 H 1.09001 * 109.47121 * 300.00221 * 9 8 6 36 36 H 1.08996 * 109.46882 * 60.00190 * 9 8 6 37 37 H 0.96997 * 120.00204 * 359.97438 * 10 9 8 38 38 H 1.09001 * 109.47427 * 300.00133 * 13 11 10 39 39 H 1.08996 * 109.47184 * 60.00475 * 13 11 10 40 40 H 1.09001 * 109.47203 * 299.99687 * 14 13 11 41 41 H 1.09000 * 109.47362 * 60.00093 * 14 13 11 42 42 H 1.09001 * 109.47116 * 299.99867 * 15 14 13 43 43 H 1.08996 * 109.47484 * 60.00202 * 15 14 13 44 44 H 0.97000 * 119.99551 * 179.97438 * 19 18 16 45 45 H 1.08996 * 110.90787 * 338.63452 * 24 2 1 46 46 H 1.08998 * 110.90989 * 102.24837 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 6 2.0694 -0.7766 1.2168 5 8 2.7956 -1.9101 0.7126 6 6 3.2660 -1.5568 -0.6059 7 1 4.1456 -0.9164 -0.5408 8 6 3.5757 -2.8134 -1.4221 9 6 4.7663 -3.5453 -0.7995 10 7 5.0631 -4.7482 -1.5813 11 6 6.0798 -5.5546 -1.2172 12 8 6.7485 -5.2848 -0.2421 13 6 6.3848 -6.7922 -2.0211 14 6 7.5755 -7.5241 -1.3985 15 6 7.8855 -8.7803 -2.2151 16 6 9.0579 -9.5016 -1.6015 17 1 9.5344 -9.1035 -0.7179 18 6 9.5222 -10.6696 -2.1683 19 7 10.5456 -11.2987 -1.6332 20 14 8.6984 -11.3576 -3.6972 21 1 9.3561 -10.8013 -4.9068 22 1 8.8223 -12.8374 -3.7027 23 1 7.2619 -10.9811 -3.6974 24 6 2.0718 -0.7831 -1.2206 25 1 -0.3633 0.4967 0.8997 26 1 -0.3633 -1.0275 -0.0196 27 1 -0.3634 0.5307 -0.8800 28 1 1.6995 1.9574 0.8837 29 1 3.1540 1.4154 0.0126 30 1 1.7198 1.9499 -0.8962 31 1 2.7351 -0.1387 1.7982 32 1 1.2402 -1.1120 1.8397 33 1 2.7055 -3.4698 -1.4227 34 1 3.8183 -2.5306 -2.4465 35 1 5.6364 -2.8889 -0.7988 36 1 4.5236 -3.8280 0.2249 37 1 4.5280 -4.9641 -2.3610 38 1 5.5148 -7.4490 -2.0214 39 1 6.6269 -6.5095 -3.0455 40 1 8.4456 -6.8677 -1.3980 41 1 7.3330 -7.8069 -0.3742 42 1 7.0155 -9.4370 -2.2161 43 1 8.1282 -8.4972 -3.2393 44 1 10.8720 -12.1206 -2.0318 45 1 1.3197 -1.4712 -1.6063 46 1 2.4103 -0.1015 -2.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894493007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:06 Heat of formation + Delta-G solvation = -120.331903 kcal Electronic energy + Delta-G solvation = -21710.271246 eV Core-core repulsion = 18405.500486 eV Total energy + Delta-G solvation = -3304.770760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43121 -39.39456 -35.78074 -34.82892 -34.20505 -32.46937 -31.94663 -29.11440 -27.93123 -27.81592 -26.32306 -24.31016 -22.84370 -21.55269 -20.37605 -19.87100 -19.64025 -17.07443 -16.74829 -16.44150 -16.16063 -15.69576 -15.51114 -15.29308 -14.45342 -14.36391 -14.14215 -14.02756 -13.71279 -13.31610 -13.29195 -13.08267 -12.60103 -12.45851 -12.22400 -11.98806 -11.94360 -11.76247 -11.69680 -11.43415 -11.19921 -11.09150 -10.95348 -10.89610 -10.74501 -9.97881 -9.95170 -9.79080 -9.65394 -9.35534 -9.08584 -8.97325 -8.47556 -5.97189 -3.94627 2.95351 3.27646 3.34101 3.41039 3.44312 3.44767 3.92703 4.16922 4.32266 4.46544 4.50256 4.67838 4.71772 4.83317 4.89303 5.03314 5.09301 5.15257 5.19576 5.21817 5.26597 5.35245 5.36101 5.40009 5.44075 5.54695 5.60866 5.62373 5.65394 5.65767 5.78367 5.82657 5.92892 6.17545 6.50482 6.54606 6.62053 6.74948 6.97542 7.42967 7.50675 7.62622 7.86725 8.48494 8.63445 9.09939 9.64921 11.16544 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.052017 B = 0.002111 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.155962 B =13259.212767 C =13509.442640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 C -0.139 4.139 4 C 0.054 3.946 5 O -0.369 6.369 6 C 0.080 3.920 7 H 0.073 0.927 8 C -0.124 4.124 9 C 0.121 3.879 10 N -0.742 5.742 11 C 0.511 3.489 12 O -0.535 6.535 13 C -0.141 4.141 14 C -0.088 4.088 15 C -0.015 4.015 16 C -0.518 4.518 17 H 0.073 0.927 18 C 0.063 3.937 19 N -0.905 5.905 20 Si 0.882 3.118 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.141 4.141 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.398 0.602 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.262 0.738 45 H 0.080 0.920 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.453 26.352 -1.422 35.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.197 4.197 4 C -0.023 4.023 5 O -0.288 6.288 6 C 0.022 3.978 7 H 0.091 0.909 8 C -0.162 4.162 9 C -0.003 4.003 10 N -0.395 5.395 11 C 0.299 3.701 12 O -0.411 6.411 13 C -0.181 4.181 14 C -0.126 4.126 15 C -0.052 4.052 16 C -0.556 4.556 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.544 5.544 20 Si 0.709 3.291 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.179 4.179 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.231 0.769 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.033 0.967 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.801 26.192 -0.599 34.731 hybrid contribution -0.682 -0.272 -1.278 1.474 sum -23.483 25.919 -1.877 35.025 Atomic orbital electron populations 1.21848 0.93295 1.02229 1.02073 1.21961 0.96788 0.96203 0.95320 1.21882 1.01087 0.94478 1.02220 1.23313 0.95729 0.87866 0.95382 1.88936 1.71932 1.36975 1.30988 1.23049 0.96347 0.95301 0.83072 0.90919 1.21831 0.99028 0.96288 0.99013 1.21233 0.96666 0.86352 0.96052 1.46124 1.35077 1.26053 1.32278 1.21161 0.79019 0.84713 0.85254 1.90697 1.49148 1.73623 1.27582 1.21863 1.02262 0.94015 0.99979 1.21266 0.94632 0.97016 0.99674 1.19613 0.97136 0.93172 0.95299 1.21178 1.13516 1.07403 1.13484 0.90929 1.25062 0.94781 0.96690 0.97203 1.69927 1.25494 1.18073 1.40908 0.86752 0.80604 0.77987 0.83746 1.20377 1.21476 1.19050 1.23298 0.97986 0.99113 0.97476 0.92326 0.92152 0.92292 0.92206 0.92298 0.92175 0.92252 0.89807 0.90321 0.89891 0.91858 0.90917 0.76863 0.89412 0.89440 0.92125 0.92068 0.96664 0.97110 0.92833 0.90124 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 8.26 37.16 0.31 -0.34 16 2 C -0.10 -0.57 0.99 -152.98 -0.15 -0.72 16 3 C -0.14 -0.64 8.26 37.16 0.31 -0.34 16 4 C 0.05 0.39 7.04 37.73 0.27 0.66 16 5 O -0.37 -3.69 10.89 -35.23 -0.38 -4.07 16 6 C 0.08 0.61 3.32 -25.67 -0.09 0.52 16 7 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 8 C -0.12 -0.92 5.11 -26.73 -0.14 -1.06 16 9 C 0.12 1.34 5.59 -4.04 -0.02 1.32 16 10 N -0.74 -8.72 5.56 -60.29 -0.33 -9.05 16 11 C 0.51 8.31 7.83 -10.99 -0.09 8.22 16 12 O -0.53 -11.12 15.98 5.55 0.09 -11.03 16 13 C -0.14 -2.26 5.70 -27.88 -0.16 -2.42 16 14 C -0.09 -1.88 4.44 -26.73 -0.12 -2.00 16 15 C -0.01 -0.36 4.04 -27.88 -0.11 -0.48 16 16 C -0.52 -15.39 9.66 -34.44 -0.33 -15.72 16 17 H 0.07 2.35 7.99 -52.49 -0.42 1.93 16 18 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 19 N -0.90 -28.71 13.96 55.43 0.77 -27.94 16 20 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 24 C -0.14 -0.80 5.71 -24.72 -0.14 -0.94 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.41 7.69 -51.93 -0.40 0.01 16 32 H 0.08 0.56 7.69 -51.92 -0.40 0.16 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.98 7.92 -51.93 -0.41 0.56 16 37 H 0.40 3.35 8.47 -40.82 -0.35 3.01 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 41 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 42 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 43 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 44 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 45 H 0.08 0.45 7.78 -51.93 -0.40 0.05 16 46 H 0.08 0.37 7.87 -51.93 -0.41 -0.03 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -35.40 368.42 -8.17 -43.57 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -8.64 Total: -2.92 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -0.56 Total: -11.48 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.44 Total: -36.99 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.29 Total: -15.10 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.40 -8.17 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894493007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.764 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds