Wall clock time and date at job start Tue Mar 31 2020 06:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47177 * 2 1 4 4 C 1.53009 * 109.47208 * 240.00506 * 2 1 3 5 5 C 1.50697 * 109.47298 * 59.99780 * 4 2 1 6 6 H 1.08001 * 120.00024 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00068 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00013 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00047 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47347 * 59.99424 * 9 7 5 11 11 H 1.48500 * 109.47267 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47412 * 299.99699 * 9 7 5 13 13 C 1.52994 * 109.47412 * 120.00327 * 2 1 3 14 14 N 1.46907 * 109.47045 * 293.81110 * 13 2 1 15 15 C 1.47903 * 110.99530 * 68.46084 * 14 13 2 16 16 C 1.53999 * 107.05515 * 145.84679 * 15 14 13 17 17 C 1.54598 * 105.13945 * 358.77306 * 16 15 14 18 18 H 1.08990 * 110.72461 * 96.57980 * 17 16 15 19 19 C 1.53001 * 110.72066 * 219.68558 * 17 16 15 20 20 O 1.44389 * 110.16574 * 55.31975 * 19 17 16 21 21 C 1.44839 * 103.23060 * 201.57086 * 20 19 17 22 22 C 1.54447 * 102.89681 * 36.61335 * 21 20 19 23 23 O 1.43778 * 110.11380 * 298.54809 * 19 17 16 24 24 C 1.48534 * 111.00112 * 185.85404 * 14 13 2 25 25 H 1.08996 * 109.47513 * 314.92814 * 1 2 3 26 26 H 1.08998 * 109.47201 * 74.92990 * 1 2 3 27 27 H 1.09000 * 109.47031 * 194.92685 * 1 2 3 28 28 H 1.09003 * 109.47642 * 175.20784 * 3 2 1 29 29 H 1.09002 * 109.47256 * 295.21230 * 3 2 1 30 30 H 1.09001 * 109.46940 * 55.20686 * 3 2 1 31 31 H 1.08997 * 109.46718 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46581 * 299.99707 * 4 2 1 33 33 H 0.96995 * 120.00332 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47668 * 173.81565 * 13 2 1 35 35 H 1.08993 * 109.47260 * 53.81031 * 13 2 1 36 36 H 1.08997 * 109.91843 * 26.49197 * 15 14 13 37 37 H 1.08997 * 109.91661 * 265.19454 * 15 14 13 38 38 H 1.09003 * 110.30519 * 239.85679 * 16 15 14 39 39 H 1.08999 * 110.30458 * 117.68965 * 16 15 14 40 40 H 1.08998 * 110.09167 * 176.95030 * 19 17 16 41 41 H 1.09002 * 110.72524 * 278.26144 * 21 20 19 42 42 H 1.08995 * 110.72718 * 154.96691 * 21 20 19 43 43 H 1.09002 * 110.31866 * 97.10574 * 22 21 20 44 44 H 1.09000 * 110.31917 * 219.19755 * 22 21 20 45 45 H 1.08999 * 110.66467 * 81.84763 * 24 14 13 46 46 H 1.09003 * 110.66610 * 318.71988 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5377 -0.0107 -2.4798 6 1 0.9164 0.8671 -2.3807 7 6 1.8703 -0.4820 -3.7320 8 7 2.6265 -1.5513 -3.8528 9 14 1.2471 0.3982 -5.2572 10 1 1.7418 1.7984 -5.2576 11 1 1.7422 -0.3017 -6.4697 12 1 -0.2379 0.3981 -5.2568 13 6 2.0400 -0.7213 1.2491 14 7 1.6761 0.0520 2.4440 15 6 0.2133 0.0338 2.6617 16 6 -0.0168 0.0411 4.1844 17 6 1.3983 0.0323 4.8067 18 1 1.7122 1.0435 5.0652 19 6 1.4436 -0.8775 6.0360 20 8 0.9920 -2.2045 5.6899 21 6 0.5937 -2.7624 6.9659 22 6 -0.0229 -1.5487 7.6954 23 8 0.5362 -0.3953 7.0416 24 6 2.2748 -0.5432 3.6661 25 1 -0.3634 0.7257 0.7275 26 1 -0.3633 0.2672 -0.9923 27 1 -0.3633 -0.9930 0.2647 28 1 3.1266 1.4438 0.0859 29 1 1.7484 1.9310 -0.9298 30 1 1.6082 1.9805 0.8440 31 1 3.1300 -0.7215 -1.2491 32 1 1.6767 -1.7489 -1.2493 33 1 2.8609 -1.8826 -4.7337 34 1 3.1244 -0.8182 1.1955 35 1 1.5891 -1.7119 1.3062 36 1 -0.2159 -0.8682 2.2256 37 1 -0.2398 0.9181 2.2136 38 1 -0.5690 -0.8484 4.4878 39 1 -0.5552 0.9411 4.4813 40 1 2.4573 -0.9185 6.4343 41 1 1.4600 -3.1398 7.5092 42 1 -0.1491 -3.5481 6.8284 43 1 -1.1078 -1.5548 7.5899 44 1 0.2543 -1.5598 8.7495 45 1 3.3114 -0.2262 3.7801 46 1 2.2048 -1.6307 3.6383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896386719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:22 Heat of formation + Delta-G solvation = -87.993179 kcal Electronic energy + Delta-G solvation = -23613.956062 eV Core-core repulsion = 20310.587614 eV Total energy + Delta-G solvation = -3303.368448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77306 -38.97574 -36.10170 -35.21878 -32.71511 -31.57055 -30.00139 -28.89388 -26.87279 -26.25901 -25.64924 -24.25306 -23.32591 -22.50896 -20.69639 -20.15308 -17.90218 -17.41138 -16.83943 -16.58442 -16.10740 -15.64352 -15.26214 -14.82151 -14.38257 -13.93257 -13.78945 -13.60300 -13.30914 -12.88361 -12.74742 -12.58131 -12.34010 -12.04508 -12.02006 -11.89343 -11.41876 -11.16711 -11.05440 -10.80582 -10.73413 -10.66949 -10.61638 -10.44759 -10.25033 -10.12521 -9.95690 -9.79062 -9.54956 -8.91254 -8.76512 -8.26875 -8.00010 -5.91794 -3.91533 3.20721 3.37824 3.42156 3.44639 3.57601 4.22315 4.32068 4.44478 4.52143 4.59488 4.70509 4.82535 4.98637 5.06539 5.07956 5.28643 5.38330 5.43799 5.48977 5.65528 5.68459 5.74978 5.81471 5.89553 5.96916 6.06954 6.15350 6.20655 6.26997 6.39847 6.48709 6.65566 6.67326 6.75727 6.84882 6.94583 7.19595 7.30272 7.33192 7.40413 7.54858 7.76774 7.92313 8.08918 8.53678 9.13573 9.70672 11.19949 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.042409 B = 0.003224 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.083689 B = 8683.124572 C = 8826.224233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.113 4.113 4 C 0.035 3.965 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.059 3.941 14 N -0.508 5.508 15 C 0.034 3.966 16 C -0.119 4.119 17 C -0.091 4.091 18 H 0.100 0.900 19 C 0.237 3.763 20 O -0.367 6.367 21 C 0.013 3.987 22 C 0.021 3.979 23 O -0.381 6.381 24 C 0.043 3.957 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.014 0.986 32 H 0.011 0.989 33 H 0.259 0.741 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 -0.391 23.433 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.055 4.055 3 C -0.170 4.170 4 C -0.003 4.003 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.069 4.069 14 N -0.231 5.231 15 C -0.094 4.094 16 C -0.157 4.157 17 C -0.111 4.111 18 H 0.118 0.882 19 C 0.142 3.858 20 O -0.287 6.287 21 C -0.064 4.064 22 C -0.056 4.056 23 O -0.303 6.303 24 C -0.085 4.085 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.747 0.135 23.012 23.315 hybrid contribution -0.461 -0.748 -0.614 1.072 sum -4.208 -0.613 22.398 22.798 Atomic orbital electron populations 1.22275 0.96183 0.99509 1.02090 1.20571 0.94790 0.96123 0.94053 1.21579 0.99524 0.95724 1.00219 1.19100 0.96026 0.94983 0.90150 1.21208 1.30708 1.11870 0.90625 0.92291 1.25013 0.95452 0.95124 0.99014 1.69958 1.37317 1.23223 1.23340 0.86728 0.79141 0.79831 0.82711 1.20316 1.21476 1.20372 1.22473 1.00304 0.94132 0.89992 1.64808 1.06793 1.49822 1.01718 1.23287 0.89964 1.01802 0.94344 1.22387 0.95777 1.02203 0.95321 1.22273 0.97729 0.98783 0.92267 0.88227 1.24307 0.92341 0.81140 0.88010 1.89520 1.83899 1.27577 1.27680 1.24241 1.00127 0.97352 0.84688 1.23934 0.99621 0.84634 0.97384 1.88913 1.61133 1.29521 1.50683 1.23130 0.98317 0.97771 0.89293 0.93348 0.91615 0.94577 0.94333 0.92647 0.93999 0.96741 0.97015 0.93147 0.91366 0.95283 0.93241 0.89572 0.91287 0.91361 0.90608 0.90815 0.87542 0.89957 0.90003 0.90265 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 7.02 37.16 0.26 -2.54 16 2 C -0.05 -1.14 0.59 -154.51 -0.09 -1.23 16 3 C -0.11 -2.27 7.96 37.16 0.30 -1.98 16 4 C 0.03 0.90 4.04 -27.88 -0.11 0.79 16 5 C -0.51 -14.08 7.38 -34.44 -0.25 -14.34 16 6 H 0.06 1.60 5.81 -52.49 -0.30 1.29 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 C 0.06 1.08 3.96 -3.82 -0.02 1.06 16 14 N -0.51 -7.99 4.35 -230.45 -1.00 -8.99 16 15 C 0.03 0.49 4.81 -2.75 -0.01 0.48 16 16 C -0.12 -1.50 6.17 -25.37 -0.16 -1.65 16 17 C -0.09 -1.08 3.26 -88.76 -0.29 -1.37 16 18 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 19 C 0.24 2.53 3.62 37.16 0.13 2.67 16 20 O -0.37 -4.14 9.74 -59.28 -0.58 -4.72 16 21 C 0.01 0.09 7.81 37.92 0.30 0.39 16 22 C 0.02 0.15 8.08 37.92 0.31 0.46 16 23 O -0.38 -4.09 11.01 -59.28 -0.65 -4.75 16 24 C 0.04 0.58 5.95 -1.90 -0.01 0.57 16 25 H 0.05 0.83 4.75 -51.93 -0.25 0.58 16 26 H 0.06 1.41 6.27 -51.93 -0.33 1.08 16 27 H 0.04 0.68 7.09 -51.93 -0.37 0.31 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.19 6.48 -51.93 -0.34 0.85 16 30 H 0.04 0.76 7.55 -51.93 -0.39 0.37 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 35 H 0.03 0.55 7.76 -51.93 -0.40 0.14 16 36 H 0.05 0.78 6.13 -51.93 -0.32 0.46 16 37 H 0.09 1.28 5.94 -51.93 -0.31 0.97 16 38 H 0.07 0.89 7.13 -51.93 -0.37 0.52 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.05 0.74 7.25 -51.93 -0.38 0.36 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -31.05 343.50 -9.04 -40.10 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.96 Total: -1.94 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 0.25 Total: -15.23 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.27 Total: -35.50 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -1.23 Total: -9.47 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.05 -9.04 -40.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896386719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.897 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds