Wall clock time and date at job start Tue Mar 31 2020 05:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00106 * 2 1 4 4 H 1.48505 * 109.46778 * 239.99730 * 3 2 1 5 5 H 1.48490 * 109.47204 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47104 * 119.99974 * 3 2 1 7 7 C 1.37873 * 119.99486 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99948 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00524 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47499 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47222 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47017 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47294 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99709 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00343 * 179.97438 * 13 12 11 16 16 C 1.47607 * 118.64445 * 354.25008 * 15 13 12 17 17 C 1.53945 * 112.14292 * 222.14879 * 16 15 13 18 18 C 1.50876 * 110.09589 * 40.56555 * 17 16 15 19 19 C 1.52568 * 109.36338 * 268.11365 * 18 17 16 20 20 C 1.47097 * 114.32509 * 85.00517 * 19 18 17 21 21 C 1.44583 * 118.64447 * 174.26776 * 15 13 12 22 22 H 1.09005 * 109.44674 * 209.29238 * 21 15 13 23 23 C 1.52996 * 109.44884 * 329.23774 * 21 15 13 24 24 O 1.42900 * 109.46901 * 86.04003 * 23 21 15 25 25 H 0.96998 * 119.99674 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47229 * 59.99702 * 9 7 2 27 27 H 1.08997 * 109.46691 * 300.00069 * 9 7 2 28 28 H 1.09006 * 109.46836 * 59.99746 * 10 9 7 29 29 H 1.09001 * 109.46947 * 300.00439 * 10 9 7 30 30 H 1.09002 * 109.46976 * 59.99804 * 11 10 9 31 31 H 1.08997 * 109.46924 * 299.99931 * 11 10 9 32 32 H 1.08994 * 109.47455 * 59.99676 * 12 11 10 33 33 H 1.09004 * 109.47251 * 300.00025 * 12 11 10 34 34 H 1.09002 * 108.94452 * 342.83565 * 16 15 13 35 35 H 1.09005 * 108.94430 * 101.46319 * 16 15 13 36 36 H 1.09003 * 109.36494 * 160.75455 * 17 16 15 37 37 H 1.08996 * 109.37080 * 280.37292 * 17 16 15 38 38 H 1.08999 * 109.49164 * 148.14463 * 18 17 16 39 39 H 1.09004 * 109.50650 * 28.09139 * 18 17 16 40 40 H 1.09006 * 108.51055 * 323.75612 * 19 18 17 41 41 H 1.09000 * 108.51809 * 206.26221 * 19 18 17 42 42 H 1.09002 * 109.32928 * 176.93959 * 20 19 18 43 43 H 1.09004 * 109.32654 * 57.46549 * 20 19 18 44 44 H 1.09003 * 109.47381 * 206.03852 * 23 21 15 45 45 H 1.08995 * 109.47514 * 326.04332 * 23 21 15 46 46 H 0.96696 * 114.00378 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4801 -4.9872 0.0046 12 6 2.4743 -6.1501 0.0063 13 6 1.7208 -7.4552 0.0074 14 8 0.5080 -7.4551 0.0074 15 7 2.3946 -8.6224 0.0085 16 6 3.8646 -8.5909 -0.1213 17 6 4.3866 -9.6829 -1.0727 18 6 3.4784 -9.8035 -2.2714 19 6 2.4138 -10.8608 -1.9952 20 6 1.2370 -10.3603 -1.2683 21 6 1.6476 -9.8537 0.1363 22 1 2.2673 -10.6048 0.6263 23 6 0.3923 -9.6034 0.9743 24 8 -0.6600 -9.1362 0.1279 25 1 -0.4849 0.8401 -0.0004 26 1 0.6239 -2.5575 -0.8879 27 1 0.6247 -2.5562 0.8920 28 1 2.8718 -3.6036 0.8927 29 1 2.8718 -3.6052 -0.8873 30 1 0.8531 -5.0459 -0.8851 31 1 0.8538 -5.0438 0.8948 32 1 3.1009 -6.0911 0.8961 33 1 3.1010 -6.0936 -0.8838 34 1 4.1653 -7.6153 -0.5034 35 1 4.3099 -8.7364 0.8629 36 1 5.3914 -9.4224 -1.4052 37 1 4.4181 -10.6365 -0.5458 38 1 4.0637 -10.0959 -3.1432 39 1 2.9973 -8.8440 -2.4616 40 1 2.8658 -11.6628 -1.4115 41 1 2.0821 -11.2751 -2.9472 42 1 0.5089 -11.1647 -1.1631 43 1 0.7874 -9.5414 -1.8300 44 1 0.0859 -10.5319 1.4561 45 1 0.6069 -8.8529 1.7351 46 1 -1.4886 -8.9567 0.5930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911950545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:27 Heat of formation + Delta-G solvation = -101.229558 kcal Electronic energy + Delta-G solvation = -23385.280925 eV Core-core repulsion = 20081.338505 eV Total energy + Delta-G solvation = -3303.942420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70114 -37.61816 -36.39439 -34.77904 -33.96766 -32.92650 -32.40175 -29.79473 -28.07013 -26.37885 -25.53875 -23.40802 -22.61629 -21.20665 -20.66817 -19.90165 -18.22140 -17.31894 -16.75945 -16.39052 -16.06974 -15.89845 -15.11544 -14.56132 -14.48249 -14.27749 -14.10779 -13.76303 -13.50146 -13.14888 -12.73022 -12.58913 -12.53616 -12.07363 -11.83134 -11.55504 -11.51626 -11.37768 -11.22544 -10.92024 -10.84955 -10.81240 -10.49937 -10.46572 -10.43677 -10.32067 -9.73386 -9.55871 -9.28463 -9.04570 -8.89817 -8.54381 -8.27325 -5.92293 -3.94762 2.90167 3.01881 3.37130 3.41353 3.43694 4.36685 4.37526 4.50701 4.53070 4.62141 4.76078 4.92290 4.95326 5.01288 5.20080 5.31067 5.34809 5.41107 5.41904 5.42836 5.49986 5.56425 5.64533 5.67048 5.72534 5.90730 5.92068 5.98654 6.03071 6.07422 6.21103 6.34516 6.38729 6.59971 6.74291 6.90669 7.08180 7.24775 7.44821 7.77324 7.92085 7.94378 8.09604 8.50518 8.52290 9.12852 9.68617 11.19043 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026925 B = 0.003174 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.687404 B = 8820.049512 C = 9457.016361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.110 4.110 11 C -0.101 4.101 12 C -0.139 4.139 13 C 0.493 3.507 14 O -0.487 6.487 15 N -0.615 5.615 16 C 0.108 3.892 17 C -0.131 4.131 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.117 4.117 21 C 0.153 3.847 22 H 0.083 0.917 23 C 0.086 3.914 24 O -0.532 6.532 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.036 0.964 45 H 0.043 0.957 46 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.430 -25.468 -0.022 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.148 4.148 11 C -0.139 4.139 12 C -0.179 4.179 13 C 0.281 3.719 14 O -0.360 6.360 15 N -0.351 5.351 16 C -0.015 4.015 17 C -0.169 4.169 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.156 4.156 21 C 0.049 3.951 22 H 0.101 0.899 23 C 0.007 3.993 24 O -0.335 6.335 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 7.075 -25.425 -0.473 26.395 hybrid contribution 0.259 0.920 0.476 1.068 sum 7.334 -24.505 0.004 25.579 Atomic orbital electron populations 1.69969 1.06041 1.26578 1.50921 1.25040 0.94841 0.99194 0.95487 0.86673 0.79576 0.83282 0.78537 1.20290 1.21328 1.20298 1.21259 0.92940 0.91257 1.50431 0.92839 1.19083 0.94052 0.91253 0.97254 1.21648 0.99051 0.94165 0.99913 1.21422 0.96997 0.92698 1.02752 1.21857 1.00041 0.92766 1.03261 1.21146 0.88972 0.85452 0.76296 1.90869 1.12859 1.86223 1.46047 1.47912 1.06596 1.05842 1.74787 1.21964 0.79590 1.00588 0.99365 1.21775 0.99475 0.99131 0.96566 1.21066 0.96898 1.00180 0.97365 1.20502 0.96477 0.98146 1.00369 1.20967 0.97122 1.01586 0.95917 1.21023 0.91678 0.86172 0.96254 0.89894 1.22021 0.88569 0.96250 0.92438 1.86751 1.22245 1.88262 1.36252 0.93014 0.96612 0.96664 0.93628 0.93599 0.91895 0.92027 0.89686 0.89672 0.89584 0.92056 0.90639 0.91685 0.92042 0.91416 0.92769 0.92593 0.91458 0.90610 0.94641 0.93873 0.78985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.82 13.29 55.43 0.74 -27.09 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.14 -1.96 4.15 -27.88 -0.12 -2.08 16 13 C 0.49 7.12 6.96 -10.99 -0.08 7.05 16 14 O -0.49 -8.55 10.98 -19.93 -0.22 -8.77 16 15 N -0.61 -6.82 2.20 -164.91 -0.36 -7.18 16 16 C 0.11 0.89 5.94 -2.94 -0.02 0.87 16 17 C -0.13 -0.90 5.71 -27.30 -0.16 -1.06 16 18 C -0.12 -0.98 5.50 -28.02 -0.15 -1.13 16 19 C -0.12 -0.99 5.15 -29.79 -0.15 -1.15 16 20 C -0.12 -1.23 4.23 -28.58 -0.12 -1.35 16 21 C 0.15 1.58 2.52 -67.98 -0.17 1.41 16 22 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 23 C 0.09 0.97 6.09 37.16 0.23 1.20 16 24 O -0.53 -7.16 9.11 -60.72 -0.55 -7.71 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.01 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.08 7.17 -51.93 -0.37 0.70 16 34 H 0.09 0.70 5.84 -51.93 -0.30 0.40 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.40 7.32 -51.93 -0.38 0.02 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.71 7.48 -51.93 -0.39 0.32 16 40 H 0.05 0.40 7.36 -51.93 -0.38 0.01 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 43 H 0.08 1.06 7.80 -51.93 -0.41 0.65 16 44 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.04 0.55 7.10 -51.93 -0.37 0.18 16 46 H 0.36 3.88 9.12 45.56 0.42 4.30 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -33.84 350.92 -9.31 -43.15 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.63 Total: -0.51 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.55 Total: -14.26 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.37 Total: -34.27 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.77 Total: -16.48 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.84 -9.31 -43.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911950545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.082 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds