Wall clock time and date at job start Tue Mar 31 2020 05:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00106 * 2 1 4 4 H 1.48505 * 109.46778 * 239.99730 * 3 2 1 5 5 H 1.48490 * 109.47204 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47104 * 119.99974 * 3 2 1 7 7 C 1.37873 * 119.99486 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99948 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00524 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47499 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47222 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47017 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47294 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99709 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00343 * 179.97438 * 13 12 11 16 16 C 1.47607 * 118.64445 * 354.25008 * 15 13 12 17 17 C 1.53945 * 112.14292 * 222.14879 * 16 15 13 18 18 C 1.50876 * 110.09589 * 40.56555 * 17 16 15 19 19 C 1.52568 * 109.36338 * 268.11365 * 18 17 16 20 20 C 1.47097 * 114.32509 * 85.00517 * 19 18 17 21 21 C 1.44583 * 118.64447 * 174.26776 * 15 13 12 22 22 H 1.09005 * 109.44674 * 209.29238 * 21 15 13 23 23 C 1.52996 * 109.44884 * 329.23774 * 21 15 13 24 24 O 1.42900 * 109.46901 * 86.04003 * 23 21 15 25 25 H 0.96998 * 119.99674 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47229 * 59.99702 * 9 7 2 27 27 H 1.08997 * 109.46691 * 300.00069 * 9 7 2 28 28 H 1.09006 * 109.46836 * 59.99746 * 10 9 7 29 29 H 1.09001 * 109.46947 * 300.00439 * 10 9 7 30 30 H 1.09002 * 109.46976 * 59.99804 * 11 10 9 31 31 H 1.08997 * 109.46924 * 299.99931 * 11 10 9 32 32 H 1.08994 * 109.47455 * 59.99676 * 12 11 10 33 33 H 1.09004 * 109.47251 * 300.00025 * 12 11 10 34 34 H 1.09002 * 108.94452 * 342.83565 * 16 15 13 35 35 H 1.09005 * 108.94430 * 101.46319 * 16 15 13 36 36 H 1.09003 * 109.36494 * 160.75455 * 17 16 15 37 37 H 1.08996 * 109.37080 * 280.37292 * 17 16 15 38 38 H 1.08999 * 109.49164 * 148.14463 * 18 17 16 39 39 H 1.09004 * 109.50650 * 28.09139 * 18 17 16 40 40 H 1.09006 * 108.51055 * 323.75612 * 19 18 17 41 41 H 1.09000 * 108.51809 * 206.26221 * 19 18 17 42 42 H 1.09002 * 109.32928 * 176.93959 * 20 19 18 43 43 H 1.09004 * 109.32654 * 57.46549 * 20 19 18 44 44 H 1.09003 * 109.47381 * 206.03852 * 23 21 15 45 45 H 1.08995 * 109.47514 * 326.04332 * 23 21 15 46 46 H 0.96696 * 114.00378 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4801 -4.9872 0.0046 12 6 2.4743 -6.1501 0.0063 13 6 1.7208 -7.4552 0.0074 14 8 0.5080 -7.4551 0.0074 15 7 2.3946 -8.6224 0.0085 16 6 3.8646 -8.5909 -0.1213 17 6 4.3866 -9.6829 -1.0727 18 6 3.4784 -9.8035 -2.2714 19 6 2.4138 -10.8608 -1.9952 20 6 1.2370 -10.3603 -1.2683 21 6 1.6476 -9.8537 0.1363 22 1 2.2673 -10.6048 0.6263 23 6 0.3923 -9.6034 0.9743 24 8 -0.6600 -9.1362 0.1279 25 1 -0.4849 0.8401 -0.0004 26 1 0.6239 -2.5575 -0.8879 27 1 0.6247 -2.5562 0.8920 28 1 2.8718 -3.6036 0.8927 29 1 2.8718 -3.6052 -0.8873 30 1 0.8531 -5.0459 -0.8851 31 1 0.8538 -5.0438 0.8948 32 1 3.1009 -6.0911 0.8961 33 1 3.1010 -6.0936 -0.8838 34 1 4.1653 -7.6153 -0.5034 35 1 4.3099 -8.7364 0.8629 36 1 5.3914 -9.4224 -1.4052 37 1 4.4181 -10.6365 -0.5458 38 1 4.0637 -10.0959 -3.1432 39 1 2.9973 -8.8440 -2.4616 40 1 2.8658 -11.6628 -1.4115 41 1 2.0821 -11.2751 -2.9472 42 1 0.5089 -11.1647 -1.1631 43 1 0.7874 -9.5414 -1.8300 44 1 0.0859 -10.5319 1.4561 45 1 0.6069 -8.8529 1.7351 46 1 -1.4886 -8.9567 0.5930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911950545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:26 Heat of formation + Delta-G solvation = -121.960570 kcal Electronic energy + Delta-G solvation = -23386.179889 eV Core-core repulsion = 20081.338505 eV Total energy + Delta-G solvation = -3304.841384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63923 -38.58984 -37.33232 -36.51815 -34.86613 -34.56368 -33.54786 -31.45125 -29.11300 -27.31872 -27.09345 -24.64833 -23.78946 -22.45687 -21.65811 -21.29460 -19.23531 -18.41894 -18.20975 -17.68098 -17.21658 -16.97858 -16.51529 -16.11768 -15.58906 -15.23646 -15.05546 -14.66443 -14.57894 -14.48226 -14.10516 -13.67767 -13.61934 -13.42235 -13.24199 -13.20782 -12.78867 -12.55063 -12.35538 -12.23512 -12.14834 -12.11029 -11.83745 -11.58769 -11.44960 -11.37473 -11.31591 -11.15757 -11.09362 -10.64294 -10.54751 -10.14416 -9.43243 -8.18711 -6.31328 1.39975 1.44373 1.52244 1.82594 2.13795 2.42038 3.13685 3.48609 3.63845 3.80328 3.94035 4.03408 4.05957 4.12677 4.14239 4.26986 4.29878 4.43259 4.55049 4.60336 4.66119 4.71820 4.75293 4.77809 4.85036 4.86737 4.96230 5.06136 5.07769 5.19420 5.26104 5.28050 5.32955 5.36566 5.37470 5.40506 5.53684 5.56068 5.77275 5.87018 5.90180 6.24998 6.48846 6.86760 7.05767 7.38282 7.47162 8.93446 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026925 B = 0.003174 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.687404 B = 8820.049512 C = 9457.016361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.090 4.090 12 C -0.129 4.129 13 C 0.487 3.513 14 O -0.530 6.530 15 N -0.606 5.606 16 C 0.098 3.902 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.107 4.107 21 C 0.148 3.852 22 H 0.116 0.884 23 C 0.083 3.917 24 O -0.555 6.555 25 H 0.263 0.737 26 H -0.017 1.017 27 H -0.016 1.016 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.032 0.968 44 H 0.062 0.938 45 H 0.024 0.976 46 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.807 -26.660 0.383 28.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.128 4.128 12 C -0.168 4.168 13 C 0.275 3.725 14 O -0.406 6.406 15 N -0.341 5.341 16 C -0.023 4.023 17 C -0.163 4.163 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.146 4.146 21 C 0.044 3.956 22 H 0.134 0.866 23 C 0.004 3.996 24 O -0.359 6.359 25 H 0.072 0.928 26 H 0.001 0.999 27 H 0.003 0.997 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.080 0.920 45 H 0.042 0.958 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 10.499 -26.655 -0.067 28.649 hybrid contribution -0.851 1.245 0.341 1.546 sum 9.649 -25.411 0.274 27.182 Atomic orbital electron populations 1.70133 1.08100 1.27842 1.51772 1.26107 0.95796 1.03775 0.94705 0.85422 0.78173 0.77596 0.79379 1.18907 1.21012 1.18818 1.21730 0.93742 0.92243 1.50461 0.91591 1.19034 0.94630 0.93783 0.94211 1.21446 0.97814 0.92918 1.01079 1.21189 0.97349 0.93575 1.00685 1.21717 0.98945 0.90787 1.05394 1.21202 0.88553 0.86534 0.76215 1.90865 1.14575 1.86907 1.48281 1.47930 1.07948 1.05011 1.73172 1.22268 0.77482 1.01503 1.01079 1.21764 0.99725 0.99329 0.95446 1.21070 0.97089 0.98594 0.98818 1.20497 0.95804 0.98723 1.00404 1.20852 0.97939 1.00052 0.95770 1.21251 0.91737 0.86412 0.96185 0.86628 1.22172 0.88700 0.96633 0.92081 1.86729 1.23131 1.88606 1.37483 0.92827 0.99889 0.99724 0.92161 0.92389 0.94334 0.93919 0.87217 0.87670 0.89438 0.89886 0.88770 0.90137 0.90934 0.94262 0.90476 0.92736 0.91205 0.94922 0.92025 0.95803 0.78269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.83 13.29 21.45 0.28 -59.54 16 2 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 3 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -32.12 9.11 25.60 0.23 -31.89 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.10 -4.04 5.15 30.60 0.16 -3.88 16 11 C -0.09 -3.41 4.50 30.59 0.14 -3.28 16 12 C -0.13 -3.50 4.15 29.85 0.12 -3.37 16 13 C 0.49 14.03 6.96 87.66 0.61 14.64 16 14 O -0.53 -19.49 10.98 21.34 0.23 -19.25 16 15 N -0.61 -12.50 2.20 -794.04 -1.74 -14.24 16 16 C 0.10 1.29 5.94 86.49 0.51 1.80 16 17 C -0.12 -1.23 5.71 30.22 0.17 -1.06 16 18 C -0.12 -1.71 5.50 29.76 0.16 -1.54 16 19 C -0.12 -1.74 5.15 28.62 0.15 -1.60 16 20 C -0.11 -2.18 4.23 29.39 0.12 -2.06 16 21 C 0.15 2.82 2.52 45.98 0.12 2.94 16 22 H 0.12 1.48 8.07 -2.38 -0.02 1.47 16 23 C 0.08 1.84 6.09 71.98 0.44 2.28 16 24 O -0.55 -15.69 9.11 -124.61 -1.13 -16.83 16 25 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 26 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 27 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 29 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 31 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 32 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.11 2.45 7.17 -2.38 -0.02 2.43 16 34 H 0.09 1.14 5.84 -2.39 -0.01 1.13 16 35 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 0.60 7.32 -2.39 -0.02 0.58 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.04 0.80 7.48 -2.38 -0.02 0.78 16 40 H 0.08 0.83 7.36 -2.38 -0.02 0.82 16 41 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 1.35 8.11 -2.39 -0.02 1.33 16 43 H 0.03 0.94 7.80 -2.39 -0.02 0.93 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 45 H 0.02 0.62 7.10 -2.39 -0.02 0.60 16 46 H 0.37 8.59 9.12 -74.06 -0.68 7.92 16 Total: -1.00 -76.97 350.92 3.48 -73.49 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.26 Total: 14.73 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 3.55 Total: -25.64 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -1.46 Total: -73.78 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.90 Total: -36.08 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -76.97 3.48 -73.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911950545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.471 kcal (2) G-P(sol) polarization free energy of solvation -76.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds