Wall clock time and date at job start Tue Mar 31 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00337 * 2 1 4 4 H 1.48501 * 109.47323 * 89.99742 * 3 2 1 5 5 H 1.48502 * 109.47141 * 209.99945 * 3 2 1 6 6 H 1.48502 * 109.46952 * 330.00016 * 3 2 1 7 7 C 1.37882 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47307 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47162 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47307 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00013 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00093 * 179.97438 * 13 12 11 16 16 C 1.47595 * 118.64387 * 355.56964 * 15 13 12 17 17 C 1.54296 * 111.94524 * 137.77755 * 16 15 13 18 18 C 1.50873 * 110.23338 * 319.69705 * 17 16 15 19 19 C 1.52568 * 109.35643 * 91.80095 * 18 17 16 20 20 C 1.47093 * 114.32492 * 274.98519 * 19 18 17 21 21 C 1.44582 * 118.64245 * 175.83374 * 15 13 12 22 22 H 1.09000 * 109.44961 * 150.66815 * 21 15 13 23 23 C 1.53000 * 109.45191 * 30.72031 * 21 15 13 24 24 O 1.42905 * 109.46890 * 53.07375 * 23 21 15 25 25 H 0.97005 * 119.99933 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47033 * 299.99936 * 9 7 2 27 27 H 1.09002 * 109.47371 * 59.99149 * 9 7 2 28 28 H 1.08999 * 109.46870 * 299.99654 * 10 9 7 29 29 H 1.08994 * 109.46886 * 59.99924 * 10 9 7 30 30 H 1.08994 * 109.47768 * 300.00386 * 11 10 9 31 31 H 1.09008 * 109.47034 * 60.00469 * 11 10 9 32 32 H 1.09003 * 109.47330 * 300.00032 * 12 11 10 33 33 H 1.08996 * 109.47404 * 60.00325 * 12 11 10 34 34 H 1.09000 * 108.94672 * 258.57555 * 16 15 13 35 35 H 1.09001 * 108.95162 * 17.19977 * 16 15 13 36 36 H 1.09007 * 109.36613 * 199.42086 * 17 16 15 37 37 H 1.08995 * 109.22593 * 79.88935 * 17 16 15 38 38 H 1.09001 * 109.49315 * 331.83619 * 18 17 16 39 39 H 1.09006 * 109.51072 * 211.77168 * 18 17 16 40 40 H 1.09002 * 108.51310 * 153.73738 * 19 18 17 41 41 H 1.09001 * 108.51380 * 36.24218 * 19 18 17 42 42 H 1.09000 * 109.32805 * 302.54006 * 20 19 18 43 43 H 1.09004 * 109.33072 * 183.06534 * 20 19 18 44 44 H 1.08993 * 109.47199 * 173.07489 * 23 21 15 45 45 H 1.09002 * 109.46879 * 293.07887 * 23 21 15 46 46 H 0.96698 * 113.99637 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4400 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1501 0.0005 13 6 1.7208 -7.4551 0.0005 14 8 0.5080 -7.4551 0.0005 15 7 2.3946 -8.6224 -0.0005 16 6 3.8667 -8.5894 -0.1017 17 6 4.5333 -9.5986 0.8564 18 6 3.8163 -9.6097 2.1838 19 6 2.7294 -10.6802 2.1625 20 6 1.4535 -10.2367 1.5804 21 6 1.6452 -9.8553 0.0917 22 1 2.1891 -10.6498 -0.4193 23 6 0.2765 -9.6701 -0.5665 24 8 0.4499 -9.1656 -1.8923 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8904 27 1 0.6245 -2.5571 -0.8896 28 1 2.8717 -3.6044 -0.8895 29 1 2.8717 -3.6044 0.8905 30 1 0.8537 -5.0446 0.8913 31 1 0.8532 -5.0451 -0.8887 32 1 3.1003 -6.0924 -0.8899 33 1 3.1015 -6.0924 0.8900 34 1 4.1564 -8.8240 -1.1260 35 1 4.2159 -7.5860 0.1420 36 1 5.5750 -9.3168 1.0105 37 1 4.4917 -10.5941 0.4146 38 1 3.3628 -8.6345 2.3604 39 1 4.5277 -9.8297 2.9800 40 1 2.5473 -11.0089 3.1856 41 1 3.0940 -11.5323 1.5887 42 1 1.0879 -9.3697 2.1307 43 1 0.7232 -11.0424 1.6552 44 1 -0.2399 -10.6291 -0.6073 45 1 -0.3145 -8.9637 0.0166 46 1 -0.3785 -9.0233 -2.3703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911950546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:29 Heat of formation + Delta-G solvation = -100.811336 kcal Electronic energy + Delta-G solvation = -23336.034435 eV Core-core repulsion = 20032.110150 eV Total energy + Delta-G solvation = -3303.924285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77706 -37.69831 -36.48059 -34.83306 -34.05045 -33.12679 -32.44252 -29.84322 -28.11714 -26.28828 -25.53733 -23.40147 -22.66203 -21.27290 -20.77332 -19.90344 -18.58836 -17.28908 -16.98912 -16.34855 -16.11182 -15.77292 -15.18017 -14.72244 -14.48421 -14.19421 -14.06254 -13.95088 -13.73787 -13.21491 -12.72758 -12.58893 -12.49069 -12.36568 -11.92798 -11.64445 -11.52400 -11.30671 -11.20314 -10.95138 -10.93624 -10.92099 -10.67120 -10.49482 -10.45864 -10.33879 -10.28711 -9.56013 -9.23443 -8.96652 -8.66153 -8.54175 -8.27612 -5.92486 -3.94750 2.86211 2.99556 3.35877 3.41791 3.45214 4.05925 4.34145 4.51081 4.58800 4.63888 4.72569 4.86135 4.88138 5.07466 5.24702 5.27962 5.34445 5.37761 5.42673 5.44344 5.47337 5.51468 5.61519 5.63314 5.79135 5.81958 5.86103 5.93619 5.97245 6.04634 6.09099 6.21099 6.37275 6.60748 6.74471 6.90685 7.07911 7.24878 7.45124 7.72909 7.77590 7.94283 8.09434 8.45265 8.51563 9.13030 9.68681 11.18872 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.003186 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.113276 B = 8785.210759 C = 9352.578376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.101 4.101 12 C -0.140 4.140 13 C 0.521 3.479 14 O -0.528 6.528 15 N -0.601 5.601 16 C 0.107 3.893 17 C -0.132 4.132 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.129 4.129 21 C 0.156 3.844 22 H 0.076 0.924 23 C 0.054 3.946 24 O -0.567 6.567 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.027 0.973 45 H 0.103 0.897 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.084 -25.255 1.991 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.139 4.139 12 C -0.180 4.180 13 C 0.311 3.689 14 O -0.405 6.405 15 N -0.335 5.335 16 C -0.016 4.016 17 C -0.170 4.170 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.167 4.167 21 C 0.051 3.949 22 H 0.094 0.906 23 C -0.024 4.024 24 O -0.371 6.371 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.045 0.955 45 H 0.120 0.880 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.935 -25.196 2.151 26.222 hybrid contribution 0.005 0.798 -0.179 0.818 sum 6.940 -24.399 1.971 25.443 Atomic orbital electron populations 1.69976 1.06045 1.26455 1.51033 1.25041 0.94836 0.99204 0.95502 0.86617 0.79844 0.83628 0.78027 1.20728 1.19914 1.21273 1.21295 0.92982 0.91231 1.50271 0.92777 1.19091 0.94061 0.91276 0.97254 1.21646 0.99062 0.94122 0.99957 1.21427 0.97002 0.92682 1.02768 1.21853 1.00093 0.92608 1.03407 1.20950 0.88140 0.85429 0.74338 1.90486 1.14177 1.86495 1.49364 1.47586 1.06305 1.05601 1.74002 1.22063 0.79137 1.01049 0.99358 1.21840 0.99689 0.99766 0.95722 1.21071 0.97507 1.00020 0.96927 1.20426 0.95379 0.98513 1.01001 1.21173 0.98003 1.02079 0.95483 1.21005 0.92233 0.86921 0.94713 0.90553 1.22974 0.96758 0.97376 0.85286 1.86386 1.35383 1.88239 1.27113 0.93080 0.96648 0.96616 0.93547 0.93607 0.91999 0.91852 0.89465 0.89508 0.91825 0.89470 0.90545 0.91663 0.91370 0.91797 0.92239 0.92362 0.91198 0.90959 0.95500 0.87963 0.77778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.29 55.43 0.74 -27.03 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.14 -2.00 4.00 -27.88 -0.11 -2.11 16 13 C 0.52 7.63 6.94 -10.99 -0.08 7.56 16 14 O -0.53 -9.18 11.56 -15.51 -0.18 -9.35 16 15 N -0.60 -6.94 2.04 -164.70 -0.34 -7.28 16 16 C 0.11 0.94 6.00 -2.76 -0.02 0.92 16 17 C -0.13 -0.91 5.71 -27.12 -0.15 -1.06 16 18 C -0.12 -0.90 5.51 -28.02 -0.15 -1.05 16 19 C -0.12 -0.87 5.15 -29.79 -0.15 -1.02 16 20 C -0.13 -1.16 5.06 -28.58 -0.14 -1.31 16 21 C 0.16 1.66 2.34 -67.97 -0.16 1.50 16 22 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 23 C 0.05 0.64 5.62 37.16 0.21 0.85 16 24 O -0.57 -7.56 12.17 -56.30 -0.69 -8.25 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.06 1.26 8.10 -51.92 -0.42 0.84 16 32 H 0.09 1.14 7.86 -51.93 -0.41 0.73 16 33 H 0.09 1.08 7.61 -51.93 -0.40 0.69 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.73 5.79 -51.93 -0.30 0.43 16 36 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.06 0.43 7.32 -51.93 -0.38 0.05 16 38 H 0.07 0.64 7.49 -51.93 -0.39 0.25 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.39 7.36 -51.93 -0.38 0.01 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 44 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.10 1.46 5.43 -53.51 -0.29 1.17 16 46 H 0.38 3.82 9.12 45.56 0.42 4.23 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -33.84 353.25 -9.31 -43.15 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.58 Total: 0.06 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -1.57 Total: -13.70 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.40 Total: -34.31 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.86 Total: -17.60 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.84 -9.31 -43.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911950546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.659 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds