Wall clock time and date at job start Tue Mar 31 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00337 * 2 1 4 4 H 1.48501 * 109.47323 * 89.99742 * 3 2 1 5 5 H 1.48502 * 109.47141 * 209.99945 * 3 2 1 6 6 H 1.48502 * 109.46952 * 330.00016 * 3 2 1 7 7 C 1.37882 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47307 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47162 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47307 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00013 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00093 * 179.97438 * 13 12 11 16 16 C 1.47595 * 118.64387 * 355.56964 * 15 13 12 17 17 C 1.54296 * 111.94524 * 137.77755 * 16 15 13 18 18 C 1.50873 * 110.23338 * 319.69705 * 17 16 15 19 19 C 1.52568 * 109.35643 * 91.80095 * 18 17 16 20 20 C 1.47093 * 114.32492 * 274.98519 * 19 18 17 21 21 C 1.44582 * 118.64245 * 175.83374 * 15 13 12 22 22 H 1.09000 * 109.44961 * 150.66815 * 21 15 13 23 23 C 1.53000 * 109.45191 * 30.72031 * 21 15 13 24 24 O 1.42905 * 109.46890 * 53.07375 * 23 21 15 25 25 H 0.97005 * 119.99933 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47033 * 299.99936 * 9 7 2 27 27 H 1.09002 * 109.47371 * 59.99149 * 9 7 2 28 28 H 1.08999 * 109.46870 * 299.99654 * 10 9 7 29 29 H 1.08994 * 109.46886 * 59.99924 * 10 9 7 30 30 H 1.08994 * 109.47768 * 300.00386 * 11 10 9 31 31 H 1.09008 * 109.47034 * 60.00469 * 11 10 9 32 32 H 1.09003 * 109.47330 * 300.00032 * 12 11 10 33 33 H 1.08996 * 109.47404 * 60.00325 * 12 11 10 34 34 H 1.09000 * 108.94672 * 258.57555 * 16 15 13 35 35 H 1.09001 * 108.95162 * 17.19977 * 16 15 13 36 36 H 1.09007 * 109.36613 * 199.42086 * 17 16 15 37 37 H 1.08995 * 109.22593 * 79.88935 * 17 16 15 38 38 H 1.09001 * 109.49315 * 331.83619 * 18 17 16 39 39 H 1.09006 * 109.51072 * 211.77168 * 18 17 16 40 40 H 1.09002 * 108.51310 * 153.73738 * 19 18 17 41 41 H 1.09001 * 108.51380 * 36.24218 * 19 18 17 42 42 H 1.09000 * 109.32805 * 302.54006 * 20 19 18 43 43 H 1.09004 * 109.33072 * 183.06534 * 20 19 18 44 44 H 1.08993 * 109.47199 * 173.07489 * 23 21 15 45 45 H 1.09002 * 109.46879 * 293.07887 * 23 21 15 46 46 H 0.96698 * 113.99637 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4400 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1501 0.0005 13 6 1.7208 -7.4551 0.0005 14 8 0.5080 -7.4551 0.0005 15 7 2.3946 -8.6224 -0.0005 16 6 3.8667 -8.5894 -0.1017 17 6 4.5333 -9.5986 0.8564 18 6 3.8163 -9.6097 2.1838 19 6 2.7294 -10.6802 2.1625 20 6 1.4535 -10.2367 1.5804 21 6 1.6452 -9.8553 0.0917 22 1 2.1891 -10.6498 -0.4193 23 6 0.2765 -9.6701 -0.5665 24 8 0.4499 -9.1656 -1.8923 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8904 27 1 0.6245 -2.5571 -0.8896 28 1 2.8717 -3.6044 -0.8895 29 1 2.8717 -3.6044 0.8905 30 1 0.8537 -5.0446 0.8913 31 1 0.8532 -5.0451 -0.8887 32 1 3.1003 -6.0924 -0.8899 33 1 3.1015 -6.0924 0.8900 34 1 4.1564 -8.8240 -1.1260 35 1 4.2159 -7.5860 0.1420 36 1 5.5750 -9.3168 1.0105 37 1 4.4917 -10.5941 0.4146 38 1 3.3628 -8.6345 2.3604 39 1 4.5277 -9.8297 2.9800 40 1 2.5473 -11.0089 3.1856 41 1 3.0940 -11.5323 1.5887 42 1 1.0879 -9.3697 2.1307 43 1 0.7232 -11.0424 1.6552 44 1 -0.2399 -10.6291 -0.6073 45 1 -0.3145 -8.9637 0.0166 46 1 -0.3785 -9.0233 -2.3703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911950546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:29 Heat of formation + Delta-G solvation = -121.759316 kcal Electronic energy + Delta-G solvation = -23336.942807 eV Core-core repulsion = 20032.110150 eV Total energy + Delta-G solvation = -3304.832657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.72919 -38.62766 -37.45507 -36.54861 -34.97156 -34.55303 -33.75406 -31.48112 -29.17461 -27.29024 -27.00584 -24.66178 -23.81855 -22.52701 -21.65551 -21.35192 -19.62153 -18.42626 -18.22193 -17.89664 -17.21044 -16.87000 -16.51165 -16.12028 -15.59593 -15.32052 -15.09114 -14.86482 -14.62197 -14.48028 -14.23186 -13.69644 -13.63561 -13.44647 -13.27732 -13.13478 -12.95984 -12.78986 -12.33287 -12.19980 -12.15612 -12.06499 -11.89501 -11.60597 -11.49696 -11.38287 -11.36344 -11.30539 -11.25397 -11.01088 -10.54856 -9.71288 -9.48647 -8.18443 -6.30704 1.40417 1.42907 1.54037 1.76822 2.09348 2.42281 3.14137 3.23926 3.63641 3.75333 3.98669 4.01109 4.06597 4.13790 4.16032 4.20537 4.27879 4.45262 4.55928 4.61729 4.65793 4.67746 4.72312 4.81724 4.83781 4.86959 4.98958 5.02645 5.04298 5.19465 5.22437 5.27477 5.29812 5.33148 5.35348 5.37317 5.48243 5.56587 5.77933 5.86789 5.88265 6.25691 6.47677 6.85849 6.87439 7.38765 7.39133 8.93857 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.003186 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.113276 B = 8785.210759 C = 9352.578376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.259 1.259 6 H -0.283 1.283 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.090 4.090 12 C -0.130 4.130 13 C 0.513 3.487 14 O -0.566 6.566 15 N -0.593 5.593 16 C 0.097 3.903 17 C -0.125 4.125 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.121 4.121 21 C 0.151 3.849 22 H 0.092 0.908 23 C 0.053 3.947 24 O -0.584 6.584 25 H 0.263 0.737 26 H -0.015 1.015 27 H -0.016 1.016 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.032 -26.330 2.169 28.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.183 1.183 6 H -0.209 1.209 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.128 4.128 12 C -0.170 4.170 13 C 0.303 3.697 14 O -0.446 6.446 15 N -0.326 5.326 16 C -0.024 4.024 17 C -0.163 4.163 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.159 4.159 21 C 0.047 3.953 22 H 0.110 0.890 23 C -0.025 4.025 24 O -0.391 6.391 25 H 0.072 0.928 26 H 0.003 0.997 27 H 0.002 0.998 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 9.921 -26.309 2.330 28.214 hybrid contribution -0.978 1.087 -0.243 1.482 sum 8.942 -25.222 2.086 26.842 Atomic orbital electron populations 1.70133 1.08070 1.27754 1.51850 1.26096 0.95794 1.03736 0.94743 0.85376 0.78672 0.78006 0.78554 1.19644 1.18328 1.20900 1.21752 0.93728 0.92238 1.50313 0.91638 1.19040 0.94628 0.93735 0.94277 1.21446 0.97843 0.92915 1.01089 1.21194 0.97326 0.93443 1.00836 1.21725 0.99069 0.90762 1.05438 1.21005 0.87779 0.86409 0.74482 1.90510 1.15667 1.87147 1.51320 1.47627 1.07569 1.04923 1.72440 1.22340 0.77292 1.02292 1.00511 1.21818 1.00242 0.99598 0.94606 1.21089 0.97761 0.98895 0.97905 1.20432 0.94472 0.98909 1.01506 1.21127 0.99366 1.01438 0.94018 1.21178 0.91586 0.86770 0.95763 0.89043 1.22961 0.97612 0.97487 0.84430 1.86338 1.36519 1.88507 1.27727 0.92839 0.99683 0.99767 0.92369 0.92198 0.93856 0.94037 0.87592 0.87145 0.91096 0.88909 0.88666 0.90759 0.93467 0.90500 0.91578 0.90856 0.93780 0.89619 0.93356 0.90732 0.76689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.56 13.29 21.45 0.28 -59.28 16 2 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 3 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.54 -31.95 9.11 25.60 0.23 -31.72 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -4.05 5.15 30.59 0.16 -3.89 16 11 C -0.09 -3.41 4.50 30.59 0.14 -3.27 16 12 C -0.13 -3.60 4.00 29.85 0.12 -3.48 16 13 C 0.51 15.00 6.94 87.66 0.61 15.61 16 14 O -0.57 -20.52 11.56 17.11 0.20 -20.32 16 15 N -0.59 -12.98 2.04 -793.38 -1.62 -14.59 16 16 C 0.10 1.46 6.00 86.61 0.52 1.98 16 17 C -0.12 -1.30 5.71 30.34 0.17 -1.13 16 18 C -0.12 -1.51 5.51 29.76 0.16 -1.35 16 19 C -0.12 -1.46 5.15 28.61 0.15 -1.31 16 20 C -0.12 -2.04 5.06 29.39 0.15 -1.89 16 21 C 0.15 3.03 2.34 45.99 0.11 3.14 16 22 H 0.09 1.59 8.07 -2.39 -0.02 1.57 16 23 C 0.05 1.25 5.62 71.98 0.40 1.66 16 24 O -0.58 -15.61 12.17 -128.84 -1.57 -17.17 16 25 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 26 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 27 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 28 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 31 H 0.04 1.73 8.10 -2.38 -0.02 1.71 16 32 H 0.11 2.54 7.86 -2.39 -0.02 2.53 16 33 H 0.11 2.53 7.61 -2.39 -0.02 2.51 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 1.29 5.79 -2.39 -0.01 1.27 16 36 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.07 0.68 7.32 -2.39 -0.02 0.66 16 38 H 0.05 0.81 7.49 -2.39 -0.02 0.79 16 39 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.74 7.36 -2.39 -0.02 0.72 16 42 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 1.19 8.11 -2.39 -0.02 1.17 16 44 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 2.23 5.43 -27.37 -0.15 2.08 16 46 H 0.39 8.06 9.12 -74.06 -0.68 7.39 16 Total: -1.00 -75.42 353.25 2.99 -72.44 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.13 Total: 15.97 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 3.53 Total: -24.28 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -1.33 Total: -73.87 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -1.37 Total: -37.49 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -75.42 2.99 -72.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911950546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.322 kcal (2) G-P(sol) polarization free energy of solvation -75.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds