Wall clock time and date at job start Tue Mar 31 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86808 * 120.00251 * 2 1 4 4 H 1.48498 * 109.46958 * 270.00691 * 3 2 1 5 5 H 1.48501 * 109.46592 * 30.00252 * 3 2 1 6 6 H 1.48497 * 109.47132 * 150.00379 * 3 2 1 7 7 C 1.37879 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99762 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00417 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.46938 * 299.99520 * 9 7 2 11 11 O 1.42903 * 109.47332 * 59.99504 * 9 7 2 12 12 C 1.52998 * 109.47137 * 179.97438 * 9 7 2 13 13 N 1.46907 * 109.47015 * 180.02562 * 12 9 7 14 14 C 1.46845 * 110.99787 * 189.99982 * 13 12 9 15 15 C 1.53040 * 109.52406 * 185.83546 * 14 13 12 16 16 C 1.53113 * 109.27950 * 300.82167 * 15 14 13 17 17 C 1.52994 * 109.52687 * 177.55408 * 16 15 14 18 18 H 1.09002 * 109.49458 * 300.10379 * 17 16 15 19 19 C 1.53093 * 109.48571 * 180.02562 * 17 16 15 20 20 C 1.53174 * 109.16375 * 182.41154 * 19 17 16 21 21 C 1.53172 * 109.03844 * 56.98496 * 20 19 17 22 22 C 1.53096 * 109.16237 * 303.01800 * 21 20 19 23 23 O 1.42905 * 109.47665 * 60.12703 * 17 16 15 24 24 C 1.53127 * 109.21347 * 57.61857 * 16 15 14 25 25 C 1.46850 * 110.99659 * 314.20388 * 13 12 9 26 26 H 0.97002 * 120.00081 * 359.97438 * 1 2 3 27 27 H 0.96705 * 113.99545 * 60.00007 * 11 9 7 28 28 H 1.08998 * 109.47200 * 60.00066 * 12 9 7 29 29 H 1.09001 * 109.46962 * 299.99685 * 12 9 7 30 30 H 1.08998 * 109.46409 * 65.82432 * 14 13 12 31 31 H 1.09002 * 109.46375 * 305.84949 * 14 13 12 32 32 H 1.08997 * 109.50549 * 180.87708 * 15 14 13 33 33 H 1.09004 * 109.49741 * 60.75890 * 15 14 13 34 34 H 1.09002 * 109.52336 * 297.68748 * 16 15 14 35 35 H 1.09001 * 109.52010 * 302.32061 * 19 17 16 36 36 H 1.09003 * 109.51713 * 62.44328 * 19 17 16 37 37 H 1.09002 * 109.54277 * 176.85322 * 20 19 17 38 38 H 1.09006 * 109.54594 * 297.02146 * 20 19 17 39 39 H 1.08996 * 109.52430 * 183.11632 * 21 20 19 40 40 H 1.08993 * 109.52369 * 62.91915 * 21 20 19 41 41 H 1.09005 * 109.47867 * 297.62453 * 22 21 20 42 42 H 1.09001 * 109.48124 * 177.59174 * 22 21 20 43 43 H 1.08999 * 109.50063 * 62.32232 * 24 16 15 44 44 H 1.08997 * 109.50000 * 182.43622 * 24 16 15 45 45 H 1.08996 * 109.46249 * 294.17719 * 25 13 12 46 46 H 1.09001 * 109.45764 * 54.15061 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8744 -0.6801 -0.8912 11 8 3.9883 -0.5206 1.1656 12 6 4.0214 -2.6365 -0.0010 13 7 5.4905 -2.6365 -0.0009 14 6 6.0167 -3.9867 -0.2389 15 6 7.5396 -3.9760 -0.0880 16 6 8.1403 -2.9894 -1.0931 17 6 9.6575 -2.9289 -0.9060 18 1 9.8862 -2.6003 0.1079 19 6 10.2570 -1.9417 -1.9109 20 6 11.7811 -1.9318 -1.7579 21 6 12.3122 -3.3550 -1.9537 22 6 11.6334 -4.2877 -0.9472 23 8 10.2167 -4.2258 -1.1240 24 6 7.5398 -1.6008 -0.8567 25 6 6.0167 -1.6807 -0.9838 26 1 -0.4850 0.8401 0.0004 27 1 3.7033 -0.9243 1.9968 28 1 3.6578 -3.1506 -0.8907 29 1 3.6585 -3.1501 0.8893 30 1 5.7540 -4.3064 -1.2472 31 1 5.5849 -4.6776 0.4852 32 1 7.9314 -4.9749 -0.2800 33 1 7.8028 -3.6696 0.9244 34 1 7.9111 -3.3175 -2.1070 35 1 9.9945 -2.2483 -2.9235 36 1 9.8642 -0.9432 -1.7192 37 1 12.2186 -1.2729 -2.5080 38 1 12.0453 -1.5763 -0.7619 39 1 13.3901 -3.3671 -1.7919 40 1 12.0913 -3.6901 -2.9671 41 1 11.8878 -3.9761 0.0659 42 1 11.9758 -5.3096 -1.1102 43 1 7.8031 -1.2560 0.1433 44 1 7.9317 -0.9039 -1.5975 45 1 5.7539 -2.0114 -1.9886 46 1 5.5849 -0.6968 -0.8007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931026344.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:59 Heat of formation + Delta-G solvation = -109.078788 kcal Electronic energy + Delta-G solvation = -23568.604395 eV Core-core repulsion = 20264.321607 eV Total energy + Delta-G solvation = -3304.282788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.01075 -38.48394 -36.06778 -33.87656 -33.74234 -32.21181 -30.78406 -30.33762 -28.30903 -25.96175 -24.56412 -23.67202 -22.89394 -21.68607 -20.41963 -20.03771 -19.34839 -17.40351 -16.35834 -16.32427 -15.28849 -14.92230 -14.80030 -14.75850 -14.66543 -14.44908 -13.97980 -13.70869 -13.61080 -13.26238 -12.92010 -12.85437 -12.67477 -12.35373 -11.92060 -11.64823 -11.49214 -11.35743 -11.22459 -11.00749 -10.89583 -10.89085 -10.72628 -10.45137 -10.37065 -10.28341 -9.98504 -9.73769 -9.50486 -8.91957 -8.60325 -8.18562 -7.72606 -6.11438 -4.22260 3.39334 3.49188 3.58853 3.76075 4.38679 4.47426 4.54637 4.54839 4.62495 4.71352 4.94120 4.97065 5.09640 5.13989 5.23066 5.24902 5.40194 5.44021 5.50040 5.51737 5.63748 5.65058 5.69808 5.76420 5.81768 5.87571 5.89075 5.91552 5.99657 6.03886 6.08977 6.19424 6.23187 6.30913 6.35041 6.44183 6.57747 6.70817 7.12306 7.33317 7.46665 7.67481 7.75476 8.31815 8.85679 9.11740 9.53545 10.99385 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.033999 B = 0.003593 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.348308 B = 7792.062597 C = 8356.491736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.083 3.917 3 Si 0.870 3.130 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.215 1.215 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.195 3.805 10 H 0.055 0.945 11 O -0.572 6.572 12 C 0.040 3.960 13 N -0.530 5.530 14 C 0.053 3.947 15 C -0.103 4.103 16 C -0.079 4.079 17 C 0.098 3.902 18 H 0.058 0.942 19 C -0.153 4.153 20 C -0.123 4.123 21 C -0.156 4.156 22 C 0.061 3.939 23 O -0.377 6.377 24 C -0.108 4.108 25 C 0.052 3.948 26 H 0.264 0.736 27 H 0.356 0.644 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.024 0.976 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.810 -6.370 -2.482 24.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.121 4.121 3 Si 0.696 3.304 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.137 1.137 7 C -0.603 4.603 8 H 0.089 0.911 9 C 0.137 3.863 10 H 0.072 0.928 11 O -0.378 6.378 12 C -0.088 4.088 13 N -0.255 5.255 14 C -0.075 4.075 15 C -0.141 4.141 16 C -0.097 4.097 17 C 0.040 3.960 18 H 0.076 0.924 19 C -0.190 4.190 20 C -0.161 4.161 21 C -0.194 4.194 22 C -0.016 4.016 23 O -0.296 6.296 24 C -0.146 4.146 25 C -0.076 4.076 26 H 0.074 0.926 27 H 0.203 0.797 28 H 0.049 0.951 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.043 0.957 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 23.980 -5.902 -2.515 24.823 hybrid contribution -0.201 0.350 -0.555 0.686 sum 23.779 -5.552 -3.069 24.610 Atomic orbital electron populations 1.69958 1.06803 1.27432 1.48957 1.24992 0.94607 0.99979 0.92558 0.87044 0.83222 0.81811 0.78294 1.21521 1.22253 1.13719 1.21528 0.89960 0.94798 1.53982 0.91093 1.19821 0.93312 0.87101 0.86057 0.92755 1.86630 1.77931 1.57033 1.16192 1.22805 0.84817 1.00869 1.00277 1.61981 1.08715 1.05555 1.49200 1.22089 0.94981 0.91319 0.99093 1.21522 0.94416 0.98918 0.99221 1.21207 0.91387 0.96819 1.00304 1.22163 0.93421 0.82999 0.97389 0.92437 1.22270 0.95397 1.00615 1.00740 1.21592 0.95851 0.96603 1.02014 1.22191 1.00242 0.96107 1.00879 1.22521 0.81568 0.99980 0.97514 1.87937 1.20252 1.30163 1.91272 1.21653 0.95474 0.95139 1.02297 1.22155 0.93971 0.98541 0.92927 0.92612 0.79739 0.95133 0.91161 0.95620 0.91203 0.91371 0.91483 0.91045 0.91147 0.90406 0.91630 0.91900 0.91191 0.91159 0.93423 0.89159 0.90969 0.91754 0.95736 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.44 13.96 55.43 0.77 -26.66 16 2 C 0.08 2.39 5.47 -17.82 -0.10 2.30 16 3 Si 0.87 21.79 26.99 -169.99 -4.59 17.20 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.21 -5.24 5.31 56.52 0.30 -4.94 16 7 C -0.56 -15.70 9.34 -34.44 -0.32 -16.02 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.19 4.52 1.60 -27.89 -0.04 4.47 16 10 H 0.05 1.30 5.64 -51.93 -0.29 1.01 16 11 O -0.57 -12.96 9.81 -35.23 -0.35 -13.30 16 12 C 0.04 0.79 4.87 -3.82 -0.02 0.78 16 13 N -0.53 -9.18 4.67 -234.66 -1.10 -10.28 16 14 C 0.05 0.80 5.42 -3.83 -0.02 0.77 16 15 C -0.10 -1.34 5.20 -26.65 -0.14 -1.48 16 16 C -0.08 -0.97 2.05 -90.50 -0.19 -1.15 16 17 C 0.10 1.06 2.23 -26.69 -0.06 1.00 16 18 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 19 C -0.15 -1.44 5.00 -26.59 -0.13 -1.58 16 20 C -0.12 -0.98 6.03 -26.55 -0.16 -1.14 16 21 C -0.16 -1.18 6.14 -26.59 -0.16 -1.34 16 22 C 0.06 0.52 6.84 37.21 0.25 0.78 16 23 O -0.38 -4.32 9.79 -35.23 -0.34 -4.66 16 24 C -0.11 -1.43 4.96 -26.64 -0.13 -1.56 16 25 C 0.05 0.86 4.85 -3.83 -0.02 0.84 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.36 7.34 9.04 45.56 0.41 7.76 16 28 H 0.03 0.62 8.08 -51.93 -0.42 0.21 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 1.01 8.12 -51.93 -0.42 0.58 16 32 H 0.07 0.85 7.77 -51.93 -0.40 0.45 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.71 6.64 -51.93 -0.34 0.37 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.75 6.64 -51.93 -0.34 0.41 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 1.71 5.66 -51.93 -0.29 1.42 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -30.74 342.59 -9.36 -40.10 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.68 Total: 5.77 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.24 Total: -13.33 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.32 Total: -36.94 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.69 Total: -17.96 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.59 Total: 17.20 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.74 -9.36 -40.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931026344.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.981 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds