Wall clock time and date at job start Tue Mar 31 2020 06:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99954 * 2 1 4 4 O 1.20821 * 120.00328 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99682 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46809 * 185.77064 * 5 3 2 7 7 H 1.09004 * 109.46925 * 305.94364 * 6 5 3 8 8 N 1.46900 * 109.47035 * 65.94601 * 6 5 3 9 9 C 1.46907 * 110.99553 * 225.78426 * 8 6 5 10 10 C 1.53003 * 109.46863 * 183.77351 * 9 8 6 11 11 C 1.50701 * 115.54809 * 39.77090 * 10 9 8 12 12 H 1.08003 * 119.99908 * 268.19073 * 11 10 9 13 13 C 1.37879 * 120.00006 * 88.19423 * 11 10 9 14 14 N 1.31516 * 120.00073 * 179.85841 * 13 11 10 15 15 Si 1.86796 * 119.99933 * 359.86106 * 13 11 10 16 16 H 1.48495 * 109.47168 * 89.22828 * 15 13 11 17 17 H 1.48496 * 109.47118 * 209.22676 * 15 13 11 18 18 H 1.48505 * 109.47050 * 329.22578 * 15 13 11 19 19 C 1.52993 * 117.49863 * 254.06332 * 10 9 8 20 20 C 1.52997 * 60.00172 * 252.50763 * 19 10 9 21 21 C 1.52996 * 109.46793 * 185.94603 * 6 5 3 22 22 C 1.52997 * 109.47461 * 64.89875 * 21 6 5 23 23 C 1.53002 * 109.46892 * 184.89471 * 21 6 5 24 24 C 1.52998 * 109.47091 * 304.89244 * 21 6 5 25 25 H 1.08993 * 109.47536 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47234 * 300.00359 * 1 2 3 27 27 H 1.09000 * 109.47314 * 59.99441 * 1 2 3 28 28 H 1.08998 * 109.47305 * 305.76925 * 5 3 2 29 29 H 1.09004 * 109.47028 * 65.77285 * 5 3 2 30 30 H 1.00899 * 110.99862 * 349.73468 * 8 6 5 31 31 H 1.08994 * 109.47231 * 303.77116 * 9 8 6 32 32 H 1.08994 * 109.47185 * 63.77670 * 9 8 6 33 33 H 0.96994 * 119.99959 * 179.97438 * 14 13 11 34 34 H 1.09003 * 117.50187 * 0.02562 * 19 10 9 35 35 H 1.09007 * 117.50163 * 145.02020 * 19 10 9 36 36 H 1.08997 * 117.50241 * 252.51171 * 20 19 10 37 37 H 1.09006 * 117.51343 * 107.47670 * 20 19 10 38 38 H 1.09002 * 109.47395 * 59.99444 * 22 21 6 39 39 H 1.08994 * 109.47320 * 180.02562 * 22 21 6 40 40 H 1.09006 * 109.46943 * 299.99858 * 22 21 6 41 41 H 1.09001 * 109.47298 * 61.78991 * 23 21 6 42 42 H 1.09002 * 109.47357 * 181.78659 * 23 21 6 43 43 H 1.08996 * 109.47392 * 301.78631 * 23 21 6 44 44 H 1.09000 * 109.47111 * 65.87928 * 24 21 6 45 45 H 1.09009 * 109.46791 * 185.87973 * 24 21 6 46 46 H 1.08994 * 109.47329 * 305.87714 * 24 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0006 2.7347 0.1446 7 1 3.5205 3.3351 -0.6283 8 7 3.6054 3.2338 1.4685 9 6 2.9797 4.5590 1.3662 10 6 2.6681 5.0854 2.7686 11 6 3.7175 4.8095 3.8144 12 1 3.6557 3.9167 4.4190 13 6 4.7564 5.6969 3.9995 14 7 5.6707 5.4575 4.9141 15 14 4.8653 7.2392 2.9513 16 1 4.1155 8.3390 3.6095 17 1 6.2887 7.6335 2.7973 18 1 4.2784 6.9711 1.6137 19 6 1.2052 5.0797 3.2164 20 6 1.8951 6.4016 2.8736 21 6 5.5202 2.8319 -0.0044 22 6 5.9203 2.4277 -1.4247 23 6 5.9676 4.2707 0.2614 24 6 6.1922 1.8949 1.0011 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 3.9609 0.6938 0.8329 29 1 3.9508 0.8729 -0.9380 30 1 2.9936 2.5800 1.9335 31 1 3.6617 5.2450 0.8639 32 1 2.0555 4.4812 0.7937 33 1 6.4018 6.0815 5.0440 34 1 0.4647 4.7006 2.5121 35 1 1.0014 4.8762 4.2678 36 1 2.1453 7.0677 3.6993 37 1 1.6088 6.8926 1.9435 38 1 5.4415 3.0953 -2.1411 39 1 7.0029 2.4965 -1.5307 40 1 5.6015 1.4026 -1.6141 41 1 5.7109 4.5481 1.2838 42 1 7.0463 4.3470 0.1242 43 1 5.4645 4.9421 -0.4344 44 1 5.9568 0.8611 0.7479 45 1 7.2720 2.0403 0.9678 46 1 5.8267 2.1156 2.0039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934033799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:28 Heat of formation + Delta-G solvation = -66.518493 kcal Electronic energy + Delta-G solvation = -24573.298103 eV Core-core repulsion = 21270.860867 eV Total energy + Delta-G solvation = -3302.437235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.59618 -38.48015 -36.74346 -36.33708 -33.06388 -31.84710 -30.76547 -27.76627 -26.93456 -26.49997 -25.75481 -24.51623 -22.84196 -21.49573 -20.73134 -18.89959 -18.03881 -17.45059 -16.67941 -16.51294 -16.03965 -15.17125 -14.77182 -14.42570 -14.23960 -13.79494 -13.66596 -13.13521 -13.01215 -12.94859 -12.79505 -12.42009 -12.21023 -12.12487 -11.77671 -11.65951 -11.44999 -11.13934 -11.00279 -10.93575 -10.83194 -10.55741 -10.39569 -10.32962 -10.26090 -10.21003 -10.13126 -9.76459 -9.36581 -8.90284 -8.34558 -8.27901 -7.40731 -5.89105 -3.86041 2.25520 2.72217 3.41224 3.50426 3.55617 4.60472 4.66546 4.71811 4.90444 5.01811 5.08437 5.10632 5.21824 5.34556 5.38003 5.41733 5.48188 5.54079 5.62560 5.87382 5.92341 5.97171 6.07404 6.15623 6.19663 6.21219 6.30187 6.34817 6.38441 6.50279 6.53894 6.58147 6.62767 6.66684 6.69803 6.85763 7.00715 7.18852 7.20505 7.28353 7.78000 7.88502 8.02070 8.24851 8.73131 9.14052 9.76046 11.23761 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.007094 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.651736 B = 3945.892582 C = 5059.077750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.455 3.545 4 O -0.498 6.498 5 C -0.129 4.129 6 C 0.107 3.893 7 H 0.056 0.944 8 N -0.640 5.640 9 C 0.098 3.902 10 C 0.007 3.993 11 C -0.448 4.448 12 H 0.075 0.925 13 C 0.079 3.921 14 N -0.905 5.905 15 Si 0.875 3.125 16 H -0.286 1.286 17 H -0.299 1.299 18 H -0.260 1.260 19 C -0.187 4.187 20 C -0.205 4.205 21 C -0.049 4.049 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.138 4.138 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.332 0.668 31 H 0.063 0.937 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.042 0.958 45 H 0.044 0.956 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 -10.003 -12.671 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.298 3.702 4 O -0.385 6.385 5 C -0.167 4.167 6 C -0.004 4.004 7 H 0.074 0.926 8 N -0.270 5.270 9 C -0.031 4.031 10 C 0.006 3.994 11 C -0.486 4.486 12 H 0.093 0.907 13 C -0.121 4.121 14 N -0.544 5.544 15 Si 0.705 3.295 16 H -0.213 1.213 17 H -0.226 1.226 18 H -0.185 1.185 19 C -0.224 4.224 20 C -0.243 4.243 21 C -0.050 4.050 22 C -0.204 4.204 23 C -0.198 4.198 24 C -0.196 4.196 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.150 0.850 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.759 -9.380 -12.439 16.026 hybrid contribution -1.016 0.806 -0.964 1.616 sum -4.775 -8.573 -13.403 16.611 Atomic orbital electron populations 1.23217 0.76685 1.03348 1.02567 1.86509 1.23235 1.33926 1.84393 1.24060 0.92508 0.81283 0.72379 1.90714 1.67207 1.36048 1.44499 1.22060 0.86717 1.01742 1.06205 1.21450 0.95179 0.90461 0.93338 0.92641 1.60346 1.47295 1.03967 1.15390 1.21756 0.95251 0.89913 0.96217 1.19526 0.90850 0.94695 0.94322 1.20019 1.05471 1.07782 1.15358 0.90679 1.24810 0.95239 0.97496 0.94556 1.69887 1.13710 1.37089 1.33734 0.86981 0.75981 0.84151 0.82415 1.21323 1.22595 1.18465 1.22863 0.97446 1.01574 1.00498 1.22926 1.08233 0.91940 1.01212 1.20448 0.93676 0.96905 0.94017 1.22011 1.01231 1.00461 0.96674 1.21880 0.99210 0.94400 1.04289 1.21854 0.99412 0.97018 1.01267 0.88379 0.91748 0.92193 0.86680 0.87340 0.84979 0.91873 0.96740 0.93083 0.91387 0.89912 0.89615 0.91394 0.93181 0.92652 0.93065 0.89147 0.93868 0.94218 0.93937 0.93662 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.52 10.57 -39.26 -0.41 -4.94 16 3 C 0.45 6.40 7.30 36.01 0.26 6.66 16 4 O -0.50 -8.50 14.00 -18.75 -0.26 -8.76 16 5 C -0.13 -1.61 4.41 -27.88 -0.12 -1.73 16 6 C 0.11 1.64 1.05 -67.71 -0.07 1.57 16 7 H 0.06 0.92 7.29 -51.93 -0.38 0.54 16 8 N -0.64 -12.14 4.00 -106.72 -0.43 -12.57 16 9 C 0.10 2.07 4.70 -3.82 -0.02 2.05 16 10 C 0.01 0.17 1.19 -155.66 -0.19 -0.02 16 11 C -0.45 -12.24 8.76 -34.44 -0.30 -12.54 16 12 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 13 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 14 N -0.91 -27.41 13.96 55.43 0.77 -26.64 16 15 Si 0.88 22.20 24.84 -169.99 -4.22 17.97 16 16 H -0.29 -7.28 7.10 56.52 0.40 -6.88 16 17 H -0.30 -7.67 7.11 56.52 0.40 -7.26 16 18 H -0.26 -6.28 5.50 56.52 0.31 -5.97 16 19 C -0.19 -4.01 9.88 -26.74 -0.26 -4.27 16 20 C -0.21 -4.60 7.55 -26.73 -0.20 -4.80 16 21 C -0.05 -0.73 0.62 -154.51 -0.10 -0.82 16 22 C -0.15 -1.72 8.23 37.16 0.31 -1.41 16 23 C -0.14 -2.46 7.21 37.16 0.27 -2.20 16 24 C -0.14 -2.03 7.75 37.16 0.29 -1.74 16 25 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.12 1.36 6.84 -51.93 -0.36 1.00 16 29 H 0.11 1.09 6.30 -51.93 -0.33 0.76 16 30 H 0.33 6.38 7.32 -39.29 -0.29 6.09 16 31 H 0.06 1.40 4.92 -51.93 -0.26 1.15 16 32 H 0.01 0.31 7.04 -51.93 -0.37 -0.06 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 35 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 36 H 0.09 2.01 7.06 -51.93 -0.37 1.65 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.51 6.44 -51.93 -0.33 0.17 16 41 H 0.09 1.95 6.88 -51.93 -0.36 1.59 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.04 0.67 7.86 -51.93 -0.41 0.26 16 44 H 0.04 0.51 6.84 -51.93 -0.36 0.16 16 45 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 46 H 0.08 1.48 7.59 -51.93 -0.39 1.09 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -30.74 351.86 -6.48 -37.22 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -8.06 Total: 8.09 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 0.83 Total: -15.67 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.35 Total: -39.21 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.68 Total: -13.70 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.22 Total: 17.97 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.74 -6.48 -37.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934033799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.301 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds