Wall clock time and date at job start Tue Mar 31 2020 06:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34234 * 116.99976 * 2 1 4 4 O 1.20817 * 120.00035 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99978 * 179.72371 * 3 2 1 6 6 C 1.52997 * 109.47063 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.47389 * 54.99701 * 6 5 3 8 8 N 1.46904 * 109.46925 * 294.99666 * 6 5 3 9 9 C 1.46902 * 110.99384 * 140.86457 * 8 6 5 10 10 C 1.53003 * 109.47032 * 175.43783 * 9 8 6 11 11 C 1.50708 * 115.55069 * 40.08965 * 10 9 8 12 12 H 1.07997 * 120.00170 * 264.64524 * 11 10 9 13 13 C 1.37873 * 119.99403 * 84.64601 * 11 10 9 14 14 N 1.31515 * 120.00436 * 1.91199 * 13 11 10 15 15 Si 1.86799 * 119.99899 * 181.91820 * 13 11 10 16 16 H 1.48504 * 109.47586 * 89.99507 * 15 13 11 17 17 H 1.48501 * 109.47328 * 209.99740 * 15 13 11 18 18 H 1.48507 * 109.46964 * 329.99985 * 15 13 11 19 19 C 1.53002 * 117.49792 * 254.39287 * 10 9 8 20 20 C 1.52993 * 117.50255 * 185.76585 * 10 9 8 21 21 C 1.53004 * 109.46869 * 175.00161 * 6 5 3 22 22 C 1.53001 * 109.47185 * 65.10428 * 21 6 5 23 23 C 1.53007 * 109.46750 * 185.10269 * 21 6 5 24 24 C 1.52995 * 109.47220 * 305.09975 * 21 6 5 25 25 H 1.08995 * 109.47374 * 299.99631 * 1 2 3 26 26 H 1.09005 * 109.47074 * 59.99989 * 1 2 3 27 27 H 1.09003 * 109.46934 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47452 * 300.00469 * 5 3 2 29 29 H 1.09005 * 109.47306 * 60.00018 * 5 3 2 30 30 H 1.00898 * 110.99774 * 16.91235 * 8 6 5 31 31 H 1.08998 * 109.47075 * 295.43211 * 9 8 6 32 32 H 1.08996 * 109.47280 * 55.43678 * 9 8 6 33 33 H 0.96999 * 120.00348 * 185.02051 * 14 13 11 34 34 H 1.08998 * 117.49810 * 359.97438 * 19 10 9 35 35 H 1.08996 * 117.50504 * 145.01873 * 19 10 9 36 36 H 1.09000 * 117.50191 * 214.97189 * 20 10 9 37 37 H 1.08997 * 117.49837 * 359.97360 * 20 10 9 38 38 H 1.08996 * 109.47375 * 60.00037 * 22 21 6 39 39 H 1.09002 * 109.47009 * 179.97438 * 22 21 6 40 40 H 1.09000 * 109.47116 * 299.99453 * 22 21 6 41 41 H 1.08994 * 109.47172 * 61.73577 * 23 21 6 42 42 H 1.09004 * 109.47067 * 181.73918 * 23 21 6 43 43 H 1.09001 * 109.46899 * 301.73448 * 23 21 6 44 44 H 1.09003 * 109.46949 * 60.00008 * 24 21 6 45 45 H 1.09002 * 109.46917 * 180.02562 * 24 21 6 46 46 H 1.08997 * 109.47214 * 300.00563 * 24 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0063 6 6 4.0000 2.7421 0.0056 7 1 3.5342 3.2591 0.8444 8 7 3.5830 3.3754 -1.2526 9 6 3.1063 4.7452 -1.0196 10 6 2.7892 5.4099 -2.3608 11 6 2.1131 4.5285 -3.3793 12 1 2.7016 4.0179 -4.1271 13 6 0.7432 4.3742 -3.3563 14 7 0.0228 5.0255 -2.4694 15 14 -0.0896 3.2399 -4.5847 16 1 -0.1749 1.8709 -4.0157 17 1 -1.4570 3.7418 -4.8739 18 1 0.7010 3.2051 -5.8413 19 6 3.7726 6.4617 -2.8780 20 6 2.4052 6.8907 -2.3421 21 6 5.5222 2.8239 0.1376 22 6 6.1754 2.2104 -1.1025 23 6 5.9450 4.2889 0.2649 24 6 5.9682 2.0544 1.3825 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.9522 0.7827 0.8990 29 1 3.9599 0.7788 -0.8810 30 1 2.8802 2.8225 -1.7201 31 1 2.2058 4.7172 -0.4062 32 1 3.8790 5.3162 -0.5049 33 1 -0.9311 4.8621 -2.4051 34 1 4.6453 6.6805 -2.2626 35 1 3.9308 6.5165 -3.9550 36 1 1.6639 7.2277 -3.0667 37 1 2.3780 7.3914 -1.3743 38 1 5.8577 2.7586 -1.9893 39 1 7.2598 2.2691 -1.0086 40 1 5.8742 1.1668 -1.1931 41 1 5.5044 4.7173 1.1650 42 1 7.0315 4.3493 0.3279 43 1 5.6003 4.8436 -0.6078 44 1 5.6669 1.0108 1.2919 45 1 7.0525 2.1131 1.4768 46 1 5.5028 2.4915 2.2659 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934033800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:30 Heat of formation + Delta-G solvation = -71.376853 kcal Electronic energy + Delta-G solvation = -24621.911553 eV Core-core repulsion = 21319.263643 eV Total energy + Delta-G solvation = -3302.647910 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.32026 -38.37727 -36.33437 -36.06590 -32.84511 -31.78191 -30.61865 -27.55926 -26.97302 -26.65733 -25.46364 -24.47925 -22.59249 -20.87577 -20.52463 -18.99951 -17.96391 -17.26291 -16.43515 -16.20218 -15.74138 -14.98358 -14.52699 -14.46209 -14.20864 -13.75637 -13.62966 -13.19554 -12.89654 -12.73879 -12.54236 -12.21539 -11.91974 -11.83246 -11.76378 -11.46173 -11.37441 -11.03689 -10.93545 -10.82343 -10.75482 -10.51957 -10.45314 -10.38898 -10.18741 -10.14355 -10.01949 -9.96055 -9.12346 -8.74015 -8.26129 -7.93197 -7.21429 -5.88511 -3.92742 2.58448 2.97836 3.31878 3.39702 3.43299 4.49238 4.85521 4.89253 5.00647 5.22081 5.28722 5.30271 5.40168 5.41270 5.48907 5.54608 5.63335 5.72911 5.74822 5.83321 5.93322 5.98763 6.12157 6.15283 6.22756 6.31249 6.39306 6.46690 6.50840 6.57558 6.65306 6.71532 6.85498 6.88261 6.93746 7.02533 7.18301 7.30635 7.62130 7.67880 8.00622 8.10021 8.22242 8.52841 8.67195 9.08789 9.70631 11.19627 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012012 B = 0.008523 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.392839 B = 3284.339456 C = 4910.170500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.443 3.557 4 O -0.474 6.474 5 C -0.125 4.125 6 C 0.105 3.895 7 H 0.051 0.949 8 N -0.659 5.659 9 C 0.107 3.893 10 C 0.055 3.945 11 C -0.482 4.482 12 H 0.058 0.942 13 C 0.072 3.928 14 N -0.872 5.872 15 Si 0.879 3.121 16 H -0.284 1.284 17 H -0.289 1.289 18 H -0.274 1.274 19 C -0.210 4.210 20 C -0.161 4.161 21 C -0.053 4.053 22 C -0.133 4.133 23 C -0.140 4.140 24 C -0.148 4.148 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.351 0.649 31 H 0.032 0.968 32 H 0.041 0.959 33 H 0.256 0.744 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.039 0.961 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.632 -8.892 7.645 13.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.284 3.716 4 O -0.358 6.358 5 C -0.163 4.163 6 C -0.007 4.007 7 H 0.069 0.931 8 N -0.292 5.292 9 C -0.022 4.022 10 C 0.054 3.946 11 C -0.521 4.521 12 H 0.076 0.924 13 C -0.131 4.131 14 N -0.509 5.509 15 Si 0.708 3.292 16 H -0.211 1.211 17 H -0.215 1.215 18 H -0.199 1.199 19 C -0.247 4.247 20 C -0.199 4.199 21 C -0.054 4.054 22 C -0.190 4.190 23 C -0.197 4.197 24 C -0.205 4.205 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.173 0.827 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.794 -8.296 7.487 13.624 hybrid contribution -1.785 -0.758 -0.140 1.944 sum 6.009 -9.054 7.346 13.117 Atomic orbital electron populations 1.23189 0.76781 1.02976 1.02807 1.86456 1.23156 1.34149 1.84829 1.23977 0.92431 0.81572 0.73578 1.90855 1.66780 1.35529 1.42656 1.21941 0.87244 1.01224 1.05852 1.21372 0.94324 0.90147 0.94818 0.93129 1.60582 1.46219 1.04174 1.18236 1.21504 0.95787 0.88079 0.96876 1.18770 0.95176 0.87286 0.93324 1.20343 0.90643 1.27762 1.13321 0.92402 1.24936 0.97323 0.95308 0.95504 1.69997 1.06296 1.39758 1.34823 0.86803 0.79039 0.81167 0.82235 1.21072 1.21500 1.19916 1.22981 0.92384 1.10339 0.99019 1.22483 0.96083 1.01727 0.99607 1.20479 0.94238 0.95798 0.94844 1.21775 0.98293 1.00030 0.98896 1.21914 0.99703 0.95723 1.02329 1.22030 1.00894 0.99895 0.97705 0.92175 0.91700 0.88645 0.87655 0.87131 0.82719 0.95014 0.94050 0.93432 0.92095 0.91009 0.90219 0.92494 0.90226 0.94174 0.93652 0.93755 0.93661 0.90512 0.92684 0.92821 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.56 16 2 O -0.37 -5.72 10.57 -39.27 -0.41 -6.13 16 3 C 0.44 7.65 7.37 36.01 0.27 7.91 16 4 O -0.47 -10.21 14.41 -18.74 -0.27 -10.48 16 5 C -0.12 -1.76 4.59 -27.88 -0.13 -1.88 16 6 C 0.10 1.68 1.07 -67.71 -0.07 1.61 16 7 H 0.05 0.91 7.47 -51.93 -0.39 0.52 16 8 N -0.66 -13.10 4.57 -106.72 -0.49 -13.59 16 9 C 0.11 2.41 5.09 -3.82 -0.02 2.39 16 10 C 0.06 1.37 1.81 -155.66 -0.28 1.09 16 11 C -0.48 -13.11 7.47 -34.44 -0.26 -13.36 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.07 2.01 5.43 -17.82 -0.10 1.91 16 14 N -0.87 -25.27 12.73 55.43 0.71 -24.57 16 15 Si 0.88 21.53 29.54 -169.99 -5.02 16.51 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 19 C -0.21 -4.76 9.88 -26.73 -0.26 -5.03 16 20 C -0.16 -3.96 9.26 -26.73 -0.25 -4.20 16 21 C -0.05 -0.71 0.62 -154.50 -0.10 -0.80 16 22 C -0.13 -1.75 8.02 37.16 0.30 -1.45 16 23 C -0.14 -1.98 7.50 37.16 0.28 -1.70 16 24 C -0.15 -1.61 7.99 37.15 0.30 -1.31 16 25 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 26 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 27 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.11 1.18 6.06 -51.93 -0.31 0.87 16 29 H 0.11 1.46 6.82 -51.93 -0.35 1.10 16 30 H 0.35 7.91 5.81 -39.29 -0.23 7.68 16 31 H 0.03 0.83 7.91 -51.93 -0.41 0.42 16 32 H 0.04 0.87 5.43 -51.93 -0.28 0.59 16 33 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 34 H 0.06 1.25 8.09 -51.93 -0.42 0.84 16 35 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.08 1.25 7.47 -51.93 -0.39 0.86 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.04 0.54 6.68 -51.93 -0.35 0.20 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 1.27 5.98 -51.93 -0.31 0.96 16 44 H 0.05 0.53 6.23 -51.93 -0.32 0.21 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -30.03 359.41 -7.29 -37.33 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -7.96 Total: 8.79 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 0.74 Total: -13.27 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.22 Total: -38.16 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.68 Total: -16.61 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.03 -7.29 -37.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934033800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.051 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds