Wall clock time and date at job start Tue Mar 31 2020 06:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99610 * 2 1 4 4 H 1.09003 * 110.01822 * 29.30398 * 3 2 1 5 5 C 1.54263 * 110.07740 * 267.88061 * 3 2 1 6 6 C 1.54886 * 104.19796 * 217.08818 * 5 3 2 7 7 C 1.54887 * 102.74922 * 37.93716 * 6 5 3 8 8 C 1.53874 * 110.02958 * 150.68766 * 3 2 1 9 9 H 1.09000 * 110.03283 * 238.66857 * 8 3 2 10 10 C 1.50702 * 110.03555 * 0.05027 * 8 3 2 11 11 O 1.21282 * 119.99876 * 85.80397 * 10 8 3 12 12 N 1.34772 * 119.99948 * 265.80932 * 10 8 3 13 13 C 1.46506 * 119.99820 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.46924 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47320 * 300.00206 * 14 13 12 16 16 C 1.53002 * 109.47407 * 59.99920 * 14 13 12 17 17 C 1.53001 * 109.47071 * 180.02562 * 14 13 12 18 18 C 1.50702 * 109.47140 * 179.97438 * 17 14 13 19 19 H 1.08004 * 119.99815 * 0.02562 * 18 17 14 20 20 C 1.37881 * 120.00121 * 179.97438 * 18 17 14 21 21 N 1.31509 * 120.00119 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99720 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47046 * 89.99525 * 22 20 18 24 24 H 1.48501 * 109.47282 * 209.99858 * 22 20 18 25 25 H 1.48500 * 109.47243 * 329.99917 * 22 20 18 26 26 H 1.09002 * 109.47247 * 60.00094 * 1 2 3 27 27 H 1.09008 * 109.46686 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47584 * 299.99686 * 1 2 3 29 29 H 1.09005 * 110.47928 * 335.76313 * 5 3 2 30 30 H 1.08992 * 110.48811 * 98.40508 * 5 3 2 31 31 H 1.09004 * 110.75402 * 279.62838 * 6 5 3 32 32 H 1.08996 * 110.91797 * 156.32960 * 6 5 3 33 33 H 1.09000 * 110.48557 * 203.37956 * 7 6 5 34 34 H 1.09003 * 110.48402 * 80.74109 * 7 6 5 35 35 H 0.97000 * 120.00589 * 359.97438 * 12 10 8 36 36 H 1.08995 * 109.46886 * 299.99624 * 13 12 10 37 37 H 1.08996 * 109.46933 * 60.00316 * 13 12 10 38 38 H 1.09002 * 109.47248 * 59.99795 * 15 14 13 39 39 H 1.08996 * 109.47304 * 180.02562 * 15 14 13 40 40 H 1.09003 * 109.46500 * 300.00237 * 15 14 13 41 41 H 1.08999 * 109.46547 * 60.00087 * 16 14 13 42 42 H 1.09005 * 109.47118 * 179.97438 * 16 14 13 43 43 H 1.08994 * 109.47124 * 300.00394 * 16 14 13 44 44 H 1.09004 * 109.46838 * 299.99440 * 17 14 13 45 45 H 1.08996 * 109.47125 * 60.00022 * 17 14 13 46 46 H 0.97003 * 119.99749 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3460 2.0096 0.5013 5 6 2.2745 1.7675 -1.4479 6 6 3.6098 2.5472 -1.3601 7 6 4.4228 1.7184 -0.3348 8 6 3.3761 1.2743 0.7078 9 1 3.3745 1.9626 1.5529 10 6 3.6803 -0.1236 1.1816 11 8 4.2044 -0.9180 0.4298 12 7 3.3699 -0.4909 2.4406 13 6 3.6652 -1.8500 2.9010 14 6 3.2159 -2.0046 4.3553 15 6 3.9635 -0.9961 5.2301 16 6 1.7108 -1.7483 4.4542 17 6 3.5249 -3.4238 4.8364 18 6 3.0829 -3.5759 6.2691 19 1 2.6269 -2.7437 6.7848 20 6 3.2598 -4.7778 6.9212 21 7 2.8737 -4.9108 8.1713 22 14 4.0478 -6.2174 6.0290 23 1 5.5191 -6.1771 6.2272 24 1 3.5098 -7.4906 6.5717 25 1 3.7412 -6.1287 4.5787 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.3776 0.9076 -2.1098 30 1 1.4730 2.4210 -1.7921 31 1 3.4425 3.5597 -0.9924 32 1 4.1132 2.5672 -2.3267 33 1 5.1892 2.3363 0.1333 34 1 4.8730 0.8507 -0.8170 35 1 2.9511 0.1446 3.0419 36 1 3.1322 -2.5683 2.2782 37 1 4.7374 -2.0326 2.8302 38 1 3.7438 0.0151 4.8875 39 1 3.6437 -1.1066 6.2662 40 1 5.0358 -1.1787 5.1596 41 1 1.1783 -2.4668 3.8311 42 1 1.3907 -1.8590 5.4903 43 1 1.4911 -0.7372 4.1116 44 1 2.9925 -4.1425 4.2133 45 1 4.5972 -3.6059 4.7660 46 1 2.9985 -5.7562 8.6301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121188144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:01 Heat of formation + Delta-G solvation = -108.629867 kcal Electronic energy + Delta-G solvation = -23581.047769 eV Core-core repulsion = 20276.784447 eV Total energy + Delta-G solvation = -3304.263322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27180 -38.40644 -37.05272 -35.84362 -33.50347 -32.06215 -29.70140 -28.46586 -27.74503 -26.51681 -26.41243 -25.84846 -22.75925 -21.33756 -21.05243 -19.68875 -18.24605 -17.43469 -16.86141 -16.44916 -15.94465 -15.38596 -15.04861 -14.75108 -14.46387 -14.08875 -13.90344 -13.70866 -13.46402 -13.26893 -12.69895 -12.61326 -12.29650 -12.23050 -11.73562 -11.65591 -11.53904 -11.32178 -11.19888 -11.06882 -11.00711 -10.95414 -10.81988 -10.58230 -10.43333 -9.92566 -9.76777 -9.74239 -9.67626 -9.30274 -8.95703 -8.62166 -8.51277 -6.02297 -3.99208 2.93360 3.33604 3.41349 3.44868 3.46479 3.65958 4.24906 4.36131 4.48000 4.69795 4.93456 5.06607 5.13130 5.14788 5.22005 5.25710 5.30874 5.36495 5.39935 5.48362 5.58608 5.60081 5.62982 5.69315 5.75424 5.77020 5.93658 6.16210 6.17550 6.19686 6.27975 6.38615 6.57552 6.63479 6.80884 6.97656 7.04465 7.04958 7.08710 7.24715 7.41173 7.78728 7.89051 8.54563 8.59250 9.01865 9.60777 11.10482 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.028684 B = 0.003716 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.911436 B = 7533.627081 C = 7711.029735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.371 6.371 3 C 0.097 3.903 4 H 0.069 0.931 5 C -0.145 4.145 6 C -0.121 4.121 7 C -0.112 4.112 8 C -0.115 4.115 9 H 0.095 0.905 10 C 0.533 3.467 11 O -0.541 6.541 12 N -0.719 5.719 13 C 0.129 3.871 14 C -0.063 4.063 15 C -0.128 4.128 16 C -0.126 4.126 17 C -0.002 4.002 18 C -0.510 4.510 19 H 0.078 0.922 20 C 0.066 3.934 21 N -0.905 5.905 22 Si 0.874 3.126 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.396 0.604 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.030 0.970 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.030 0.970 44 H 0.018 0.982 45 H 0.013 0.987 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 16.900 -16.701 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C 0.038 3.962 4 H 0.087 0.913 5 C -0.183 4.183 6 C -0.158 4.158 7 C -0.150 4.150 8 C -0.137 4.137 9 H 0.113 0.887 10 C 0.318 3.682 11 O -0.418 6.418 12 N -0.370 5.370 13 C 0.006 3.994 14 C -0.063 4.063 15 C -0.185 4.185 16 C -0.183 4.183 17 C -0.040 4.040 18 C -0.548 4.548 19 H 0.096 0.904 20 C -0.135 4.135 21 N -0.544 5.544 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.049 0.951 44 H 0.036 0.964 45 H 0.031 0.969 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.120 16.003 -17.079 23.501 hybrid contribution -0.092 -0.361 0.052 0.376 sum -2.212 15.641 -17.028 23.227 Atomic orbital electron populations 1.22788 0.81134 1.03000 0.99596 1.88095 1.19484 1.26523 1.94828 1.22689 0.92782 0.85291 0.95395 0.91257 1.22885 0.97780 1.00585 0.97020 1.22403 0.95458 0.98356 0.99598 1.22362 0.96487 1.00733 0.95433 1.22109 0.96063 0.95862 0.99618 0.88719 1.19934 0.77709 0.88903 0.81617 1.90640 1.43456 1.53383 1.54363 1.46093 1.62679 1.15155 1.13093 1.21561 1.00195 0.82148 0.95535 1.20680 0.95542 0.98812 0.91290 1.21771 0.99687 0.95811 1.01266 1.21743 0.95172 0.98463 1.02961 1.19589 0.96291 0.90628 0.97482 1.21093 1.39817 0.98919 0.94934 0.90430 1.24996 0.95228 0.98553 0.94675 1.69903 1.48111 1.25737 1.10657 0.86861 0.79855 0.82292 0.80787 1.20376 1.21526 1.18962 0.94284 0.89558 0.93988 0.90081 0.91432 0.91373 0.90965 0.91095 0.89228 0.76961 0.91996 0.92155 0.95066 0.90972 0.93458 0.93469 0.91055 0.95082 0.96392 0.96855 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.85 101.05 1.10 1.40 16 2 O -0.37 -4.79 8.82 -35.24 -0.31 -5.10 16 3 C 0.10 0.99 3.35 -25.61 -0.09 0.90 16 4 H 0.07 0.56 7.81 -51.93 -0.41 0.15 16 5 C -0.14 -1.28 6.56 -25.08 -0.16 -1.44 16 6 C -0.12 -0.94 6.91 -24.74 -0.17 -1.11 16 7 C -0.11 -1.13 6.31 -25.07 -0.16 -1.29 16 8 C -0.11 -1.26 3.29 -90.65 -0.30 -1.56 16 9 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 10 C 0.53 8.13 5.57 -10.99 -0.06 8.07 16 11 O -0.54 -10.44 15.74 5.55 0.09 -10.36 16 12 N -0.72 -10.64 4.96 -60.29 -0.30 -10.94 16 13 C 0.13 2.27 4.57 -4.04 -0.02 2.26 16 14 C -0.06 -1.18 0.54 -154.50 -0.08 -1.26 16 15 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 16 C -0.13 -2.23 8.05 37.16 0.30 -1.94 16 17 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 18 C -0.51 -13.78 8.20 -34.44 -0.28 -14.07 16 19 H 0.08 2.21 5.92 -52.48 -0.31 1.90 16 20 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 22 Si 0.87 21.78 27.47 -169.99 -4.67 17.11 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 28 H 0.04 0.35 8.10 -51.93 -0.42 -0.07 16 29 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.13 6.89 -51.93 -0.36 0.78 16 35 H 0.40 4.99 6.16 -40.82 -0.25 4.74 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 39 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 43 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 44 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 45 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 46 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 355.07 15.07 5.35 5.35 Total: -1.00 -32.47 355.07 -7.03 -39.50 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.15 Total: 1.41 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 0.19 Total: -10.33 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.47 Total: -37.59 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.22 Total: -15.45 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.47 -7.03 -39.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121188144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.126 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds