Wall clock time and date at job start Tue Mar 31 2020 06:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99610 * 2 1 4 4 H 1.09003 * 110.01822 * 29.30398 * 3 2 1 5 5 C 1.54263 * 110.07740 * 267.88061 * 3 2 1 6 6 C 1.54886 * 104.19796 * 217.08818 * 5 3 2 7 7 C 1.54887 * 102.74922 * 37.93716 * 6 5 3 8 8 C 1.53874 * 110.02958 * 150.68766 * 3 2 1 9 9 H 1.09000 * 110.03283 * 238.66857 * 8 3 2 10 10 C 1.50702 * 110.03555 * 0.05027 * 8 3 2 11 11 O 1.21282 * 119.99876 * 85.80397 * 10 8 3 12 12 N 1.34772 * 119.99948 * 265.80932 * 10 8 3 13 13 C 1.46506 * 119.99820 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.46924 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47320 * 300.00206 * 14 13 12 16 16 C 1.53002 * 109.47407 * 59.99920 * 14 13 12 17 17 C 1.53001 * 109.47071 * 180.02562 * 14 13 12 18 18 C 1.50702 * 109.47140 * 179.97438 * 17 14 13 19 19 H 1.08004 * 119.99815 * 0.02562 * 18 17 14 20 20 C 1.37881 * 120.00121 * 179.97438 * 18 17 14 21 21 N 1.31509 * 120.00119 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99720 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47046 * 89.99525 * 22 20 18 24 24 H 1.48501 * 109.47282 * 209.99858 * 22 20 18 25 25 H 1.48500 * 109.47243 * 329.99917 * 22 20 18 26 26 H 1.09002 * 109.47247 * 60.00094 * 1 2 3 27 27 H 1.09008 * 109.46686 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47584 * 299.99686 * 1 2 3 29 29 H 1.09005 * 110.47928 * 335.76313 * 5 3 2 30 30 H 1.08992 * 110.48811 * 98.40508 * 5 3 2 31 31 H 1.09004 * 110.75402 * 279.62838 * 6 5 3 32 32 H 1.08996 * 110.91797 * 156.32960 * 6 5 3 33 33 H 1.09000 * 110.48557 * 203.37956 * 7 6 5 34 34 H 1.09003 * 110.48402 * 80.74109 * 7 6 5 35 35 H 0.97000 * 120.00589 * 359.97438 * 12 10 8 36 36 H 1.08995 * 109.46886 * 299.99624 * 13 12 10 37 37 H 1.08996 * 109.46933 * 60.00316 * 13 12 10 38 38 H 1.09002 * 109.47248 * 59.99795 * 15 14 13 39 39 H 1.08996 * 109.47304 * 180.02562 * 15 14 13 40 40 H 1.09003 * 109.46500 * 300.00237 * 15 14 13 41 41 H 1.08999 * 109.46547 * 60.00087 * 16 14 13 42 42 H 1.09005 * 109.47118 * 179.97438 * 16 14 13 43 43 H 1.08994 * 109.47124 * 300.00394 * 16 14 13 44 44 H 1.09004 * 109.46838 * 299.99440 * 17 14 13 45 45 H 1.08996 * 109.47125 * 60.00022 * 17 14 13 46 46 H 0.97003 * 119.99749 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3460 2.0096 0.5013 5 6 2.2745 1.7675 -1.4479 6 6 3.6098 2.5472 -1.3601 7 6 4.4228 1.7184 -0.3348 8 6 3.3761 1.2743 0.7078 9 1 3.3745 1.9626 1.5529 10 6 3.6803 -0.1236 1.1816 11 8 4.2044 -0.9180 0.4298 12 7 3.3699 -0.4909 2.4406 13 6 3.6652 -1.8500 2.9010 14 6 3.2159 -2.0046 4.3553 15 6 3.9635 -0.9961 5.2301 16 6 1.7108 -1.7483 4.4542 17 6 3.5249 -3.4238 4.8364 18 6 3.0829 -3.5759 6.2691 19 1 2.6269 -2.7437 6.7848 20 6 3.2598 -4.7778 6.9212 21 7 2.8737 -4.9108 8.1713 22 14 4.0478 -6.2174 6.0290 23 1 5.5191 -6.1771 6.2272 24 1 3.5098 -7.4906 6.5717 25 1 3.7412 -6.1287 4.5787 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.3776 0.9076 -2.1098 30 1 1.4730 2.4210 -1.7921 31 1 3.4425 3.5597 -0.9924 32 1 4.1132 2.5672 -2.3267 33 1 5.1892 2.3363 0.1333 34 1 4.8730 0.8507 -0.8170 35 1 2.9511 0.1446 3.0419 36 1 3.1322 -2.5683 2.2782 37 1 4.7374 -2.0326 2.8302 38 1 3.7438 0.0151 4.8875 39 1 3.6437 -1.1066 6.2662 40 1 5.0358 -1.1787 5.1596 41 1 1.1783 -2.4668 3.8311 42 1 1.3907 -1.8590 5.4903 43 1 1.4911 -0.7372 4.1116 44 1 2.9925 -4.1425 4.2133 45 1 4.5972 -3.6059 4.7660 46 1 2.9985 -5.7562 8.6301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121188144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:01 Heat of formation + Delta-G solvation = -130.158721 kcal Electronic energy + Delta-G solvation = -23581.981330 eV Core-core repulsion = 20276.784447 eV Total energy + Delta-G solvation = -3305.196883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.31271 -39.52426 -38.43079 -36.67105 -35.14670 -33.95262 -30.64858 -29.60151 -29.16403 -27.98616 -27.52689 -26.85597 -24.52316 -22.53949 -21.72177 -20.79915 -19.65570 -18.91097 -18.47780 -17.38314 -17.06522 -16.41096 -16.23756 -15.89740 -15.87326 -15.42378 -15.22042 -14.93269 -14.68209 -14.52660 -14.19093 -14.13971 -13.82767 -13.37128 -12.94253 -12.84956 -12.62784 -12.49877 -12.37908 -12.31069 -12.26712 -12.16433 -11.95178 -11.79657 -11.73335 -11.52718 -11.48064 -11.25448 -10.92720 -10.71287 -10.65010 -10.49490 -9.94748 -8.23381 -6.23132 1.34367 1.37300 1.47632 1.79184 2.33360 2.38149 2.87061 3.11998 3.53983 3.63762 3.87117 3.96998 4.06619 4.16796 4.24510 4.33480 4.42125 4.44047 4.50112 4.58129 4.63601 4.65151 4.72194 4.76715 4.80700 4.89303 4.95713 5.00670 5.02880 5.07354 5.09101 5.18895 5.21840 5.29184 5.38320 5.39824 5.46382 5.52823 5.61114 5.69564 5.76007 6.32519 6.37398 6.71738 6.83400 7.39604 7.42479 8.92153 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.028684 B = 0.003716 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.911436 B = 7533.627081 C = 7711.029735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.091 3.909 4 H 0.100 0.900 5 C -0.144 4.144 6 C -0.112 4.112 7 C -0.115 4.115 8 C -0.113 4.113 9 H 0.129 0.871 10 C 0.530 3.470 11 O -0.589 6.589 12 N -0.710 5.710 13 C 0.143 3.857 14 C -0.057 4.057 15 C -0.122 4.122 16 C -0.119 4.119 17 C -0.003 4.003 18 C -0.501 4.501 19 H 0.054 0.946 20 C 0.008 3.992 21 N -0.950 5.950 22 Si 0.932 3.068 23 H -0.271 1.271 24 H -0.287 1.287 25 H -0.256 1.256 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.409 0.591 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.040 0.960 42 H 0.046 0.954 43 H 0.068 0.932 44 H 0.011 0.989 45 H 0.011 0.989 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 19.455 -18.123 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C 0.033 3.967 4 H 0.118 0.882 5 C -0.182 4.182 6 C -0.149 4.149 7 C -0.153 4.153 8 C -0.134 4.134 9 H 0.147 0.853 10 C 0.317 3.683 11 O -0.469 6.469 12 N -0.362 5.362 13 C 0.018 3.982 14 C -0.058 4.058 15 C -0.180 4.180 16 C -0.177 4.177 17 C -0.041 4.041 18 C -0.539 4.539 19 H 0.072 0.928 20 C -0.189 4.189 21 N -0.591 5.591 22 Si 0.757 3.243 23 H -0.196 1.196 24 H -0.213 1.213 25 H -0.180 1.180 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.247 0.753 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.029 0.971 45 H 0.030 0.970 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.381 18.592 -18.504 26.339 hybrid contribution -0.042 -1.109 0.490 1.213 sum -2.423 17.483 -18.014 25.220 Atomic orbital electron populations 1.22894 0.79857 1.02987 1.01096 1.88055 1.21135 1.28436 1.95098 1.22950 0.92537 0.84948 0.96257 0.88234 1.22882 0.99221 1.00156 0.95924 1.22407 0.94274 0.99012 0.99231 1.22374 0.97025 1.00049 0.95869 1.22283 0.96942 0.93195 1.00989 0.85312 1.20749 0.76287 0.90353 0.80868 1.90623 1.45477 1.55247 1.55528 1.45946 1.62631 1.14060 1.13523 1.21162 0.99171 0.83665 0.94168 1.20549 0.96596 0.96473 0.92175 1.21694 0.99179 0.97581 0.99510 1.21656 0.94065 1.00583 1.01361 1.19563 0.95785 0.93666 0.95094 1.21359 1.38178 0.97909 0.96474 0.92780 1.25797 0.96259 1.01470 0.95359 1.70031 1.50244 1.26547 1.12320 0.85927 0.79178 0.79133 0.80026 1.19636 1.21281 1.17964 0.92616 0.90483 0.92558 0.92718 0.89091 0.88682 0.90598 0.89380 0.92733 0.75332 0.93789 0.93209 0.91161 0.93484 0.93746 0.94117 0.93500 0.91343 0.97100 0.97047 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.85 113.37 1.23 1.71 16 2 O -0.41 -9.84 8.82 -148.98 -1.31 -11.15 16 3 C 0.09 1.56 3.35 31.32 0.10 1.67 16 4 H 0.10 1.11 7.81 -2.39 -0.02 1.09 16 5 C -0.14 -2.16 6.56 31.67 0.21 -1.95 16 6 C -0.11 -1.39 6.91 31.88 0.22 -1.17 16 7 C -0.12 -2.06 6.31 31.67 0.20 -1.86 16 8 C -0.11 -2.13 3.29 -10.82 -0.04 -2.17 16 9 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 10 C 0.53 15.38 5.57 87.66 0.49 15.87 16 11 O -0.59 -22.86 15.74 -3.03 -0.05 -22.91 16 12 N -0.71 -19.48 4.96 -463.06 -2.30 -21.78 16 13 C 0.14 4.92 4.57 86.38 0.39 5.31 16 14 C -0.06 -2.11 0.54 -52.18 -0.03 -2.14 16 15 C -0.12 -4.13 8.05 71.98 0.58 -3.55 16 16 C -0.12 -4.09 8.05 71.98 0.58 -3.52 16 17 C 0.00 -0.15 3.11 29.85 0.09 -0.05 16 18 C -0.50 -27.57 8.20 25.60 0.21 -27.36 16 19 H 0.05 3.18 5.92 -2.91 -0.02 3.16 16 20 C 0.01 0.43 5.47 84.66 0.46 0.90 16 21 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 22 Si 0.93 45.22 27.47 68.60 1.88 47.11 16 23 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.26 -11.89 6.54 99.48 0.65 -11.24 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 29 H 0.05 1.11 8.08 -2.38 -0.02 1.09 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.38 6.89 -2.39 -0.02 1.36 16 35 H 0.41 8.83 6.16 -92.71 -0.57 8.26 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.07 1.80 6.86 -2.39 -0.02 1.78 16 39 H 0.05 1.83 6.62 -2.39 -0.02 1.81 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.05 1.84 6.62 -2.38 -0.02 1.82 16 43 H 0.07 1.81 6.86 -2.39 -0.02 1.79 16 44 H 0.01 0.51 7.20 -2.39 -0.02 0.50 16 45 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 46 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -73.24 355.07 3.55 -69.69 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.32 Total: 15.94 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 4.71 Total: -18.31 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -2.00 Total: -80.36 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -1.36 Total: -34.06 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.11 kcal Total: -73.24 3.55 -69.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121188144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.471 kcal (2) G-P(sol) polarization free energy of solvation -73.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds