Wall clock time and date at job start Tue Mar 31 2020 05:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.53006 * 109.47194 * 59.71653 * 5 3 2 7 7 C 1.53002 * 109.46796 * 299.72392 * 5 3 2 8 8 C 1.53000 * 109.46948 * 299.99638 * 7 5 3 9 9 C 1.53011 * 109.47183 * 300.00114 * 8 7 5 10 10 N 1.46900 * 109.47034 * 179.97438 * 9 8 7 11 11 C 1.46901 * 110.99883 * 85.00406 * 10 9 8 12 12 C 1.52997 * 109.46943 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47111 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.46999 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00577 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00095 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99543 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00322 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46772 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47047 * 120.00137 * 18 16 14 21 21 H 1.48502 * 109.47085 * 240.00089 * 18 16 14 22 22 C 1.52997 * 109.46779 * 60.00053 * 9 8 7 23 23 C 1.52996 * 109.47491 * 179.72204 * 5 3 2 24 24 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 25 25 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 26 26 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46828 * 60.00529 * 6 5 3 28 28 H 1.09003 * 109.47167 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.47378 * 300.00588 * 6 5 3 30 30 H 1.08993 * 109.47452 * 60.00035 * 7 5 3 31 31 H 1.09003 * 109.46969 * 179.97438 * 7 5 3 32 32 H 1.08999 * 109.47513 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47407 * 59.99681 * 8 7 5 34 34 H 1.08994 * 109.47054 * 300.00061 * 9 8 7 35 35 H 1.00901 * 110.99910 * 208.95364 * 10 9 8 36 36 H 1.09006 * 109.46784 * 299.99412 * 11 10 9 37 37 H 1.09000 * 109.47015 * 59.99697 * 11 10 9 38 38 H 1.09001 * 109.47214 * 299.99935 * 12 11 10 39 39 H 1.09009 * 109.47189 * 60.00119 * 12 11 10 40 40 H 1.08993 * 109.47391 * 300.00062 * 13 12 11 41 41 H 1.09000 * 109.46489 * 60.00146 * 13 12 11 42 42 H 0.96998 * 119.99696 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.47245 * 180.02562 * 22 9 8 44 44 H 1.09003 * 109.47646 * 59.99659 * 22 9 8 45 45 H 1.09003 * 109.47345 * 179.97438 * 23 5 3 46 46 H 1.09004 * 109.47066 * 299.99799 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.1084 0.5780 -1.2558 7 6 4.1183 0.5848 1.2427 8 6 3.5762 1.2817 2.4922 9 6 4.0100 2.7490 2.4865 10 7 3.4889 3.4183 3.6860 11 6 4.3884 3.2223 4.8308 12 6 3.8139 3.9326 6.0580 13 6 4.7504 3.7280 7.2506 14 6 4.1849 4.4282 8.4593 15 1 3.2507 4.9650 8.3846 16 6 4.8600 4.3835 9.6606 17 7 5.9978 3.7301 9.7515 18 14 4.1587 5.2507 11.1591 19 1 2.8780 5.9088 10.7958 20 1 3.9176 4.2587 12.2375 21 1 5.1232 6.2747 11.6350 22 6 3.4579 3.4391 1.2376 23 6 4.0000 2.7422 -0.0119 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 3.7151 1.0697 -2.1455 28 1 5.1970 0.6347 -1.2600 29 1 3.7994 -0.4673 -1.2517 30 1 3.8094 -0.4605 1.2467 31 1 5.2068 0.6415 1.2380 32 1 3.9698 0.7903 3.3820 33 1 2.4877 1.2247 2.4967 34 1 5.0984 2.8061 2.4821 35 1 3.3324 4.3999 3.5130 36 1 4.4845 2.1567 5.0391 37 1 5.3691 3.6368 4.5974 38 1 3.7181 4.9982 5.8495 39 1 2.8330 3.5184 6.2916 40 1 4.8458 2.6625 7.4590 41 1 5.7314 4.1419 7.0173 42 1 6.4726 3.6983 10.5967 43 1 3.7673 4.4843 1.2333 44 1 2.3694 3.3820 1.2420 45 1 5.0885 2.7993 -0.0159 46 1 3.6067 3.2339 -0.9017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168752476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:59 Heat of formation + Delta-G solvation = -119.205988 kcal Electronic energy + Delta-G solvation = -22947.278755 eV Core-core repulsion = 19642.556818 eV Total energy + Delta-G solvation = -3304.721937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.32089 -38.69750 -36.62896 -35.87701 -33.72566 -32.09350 -30.97585 -30.07951 -28.01879 -26.67881 -25.04054 -23.50701 -23.13331 -22.06807 -20.62010 -20.06988 -19.67654 -17.38683 -16.83407 -16.31620 -16.16401 -15.63304 -15.02245 -14.57156 -14.49007 -14.31048 -14.21335 -13.84636 -13.39161 -13.17390 -12.81116 -12.63677 -12.45783 -12.40940 -12.25348 -12.12961 -11.71791 -11.59578 -11.45596 -11.18711 -11.06639 -10.86903 -10.81169 -10.65338 -10.54453 -10.37278 -10.15397 -10.02682 -9.63991 -9.27752 -8.99605 -8.31369 -8.08403 -5.96490 -3.98194 2.05299 2.50510 3.33548 3.40741 3.45745 4.20550 4.26349 4.37578 4.49450 4.64088 4.78262 4.87987 4.92575 4.96446 5.04840 5.25264 5.28687 5.32441 5.33421 5.35266 5.39363 5.44260 5.58722 5.66208 5.72239 5.79788 5.85195 5.90282 5.95724 6.10069 6.10422 6.12334 6.27328 6.40232 6.50263 6.78087 6.85664 7.19033 7.45528 7.60105 7.71811 7.73948 7.88428 8.04545 8.48245 9.09362 9.65647 11.15058 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.030569 B = 0.002778 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.751471 B =10077.992438 C =10339.620035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.473 3.527 4 O -0.499 6.499 5 C -0.050 4.050 6 C -0.142 4.142 7 C -0.108 4.108 8 C -0.112 4.112 9 C 0.087 3.913 10 N -0.688 5.688 11 C 0.060 3.940 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.137 4.137 23 C -0.095 4.095 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.338 0.662 36 H 0.065 0.935 37 H 0.023 0.977 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.259 0.741 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.141 -8.319 -25.016 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.316 3.684 4 O -0.386 6.386 5 C -0.051 4.051 6 C -0.199 4.199 7 C -0.146 4.146 8 C -0.150 4.150 9 C -0.023 4.023 10 N -0.319 5.319 11 C -0.068 4.068 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.174 4.174 23 C -0.133 4.133 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.118 0.882 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.156 0.844 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.113 0.887 45 H 0.095 0.905 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.656 -8.586 -24.713 26.767 hybrid contribution 0.225 1.100 0.732 1.340 sum -5.431 -7.486 -23.981 25.703 Atomic orbital electron populations 1.23265 0.76515 1.03609 1.02590 1.86498 1.23233 1.33625 1.84065 1.23679 0.91771 0.81239 0.71719 1.90611 1.67073 1.36107 1.44793 1.20648 0.86954 0.98841 0.98676 1.21872 1.01976 1.00910 0.95174 1.21673 1.01303 0.99539 0.92061 1.21589 1.01208 0.95103 0.97119 1.21514 0.96734 0.94253 0.89816 1.60535 1.49196 1.17875 1.04326 1.22159 0.93006 1.00917 0.90756 1.21625 1.00396 0.98308 0.94195 1.19066 0.94192 0.97061 0.91239 1.21310 1.07132 1.32401 0.94698 0.92634 1.25038 0.94980 0.95613 0.98964 1.69983 1.15479 1.42535 1.25676 0.86542 0.79123 0.79426 0.82960 1.19721 1.21024 1.21067 1.21999 1.03865 0.98676 0.92893 1.21461 1.00926 0.91658 0.99224 0.91700 0.92090 0.88189 0.92155 0.90810 0.91161 0.90447 0.90267 0.91045 0.91824 0.94083 0.84365 0.91612 0.95884 0.93703 0.92637 0.96618 0.96848 0.93130 0.91946 0.88657 0.90543 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.67 10.37 -39.26 -0.41 -4.08 16 3 C 0.47 5.36 5.04 36.00 0.18 5.54 16 4 O -0.50 -6.88 13.41 -18.76 -0.25 -7.13 16 5 C -0.05 -0.46 0.72 -155.66 -0.11 -0.57 16 6 C -0.14 -0.96 8.40 37.16 0.31 -0.65 16 7 C -0.11 -1.01 4.67 -26.73 -0.12 -1.13 16 8 C -0.11 -1.38 5.21 -26.73 -0.14 -1.52 16 9 C 0.09 1.13 2.49 -67.71 -0.17 0.96 16 10 N -0.69 -10.72 6.31 -106.72 -0.67 -11.39 16 11 C 0.06 1.08 5.48 -3.83 -0.02 1.06 16 12 C -0.11 -2.31 5.41 -26.73 -0.14 -2.46 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 18 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.14 -1.61 4.90 -26.73 -0.13 -1.74 16 23 C -0.09 -0.90 4.37 -26.73 -0.12 -1.01 16 24 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 25 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 30 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.94 7.45 -51.93 -0.39 0.55 16 33 H 0.06 0.88 7.22 -51.93 -0.37 0.51 16 34 H 0.04 0.54 7.80 -51.93 -0.41 0.13 16 35 H 0.34 5.04 8.34 -39.29 -0.33 4.71 16 36 H 0.07 1.20 7.44 -51.93 -0.39 0.82 16 37 H 0.02 0.41 8.06 -51.93 -0.42 0.00 16 38 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 44 H 0.10 1.33 5.52 -51.93 -0.29 1.04 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -32.41 360.90 -8.59 -41.00 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.46 Total: -0.57 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 0.05 Total: -13.62 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.06 Total: -38.13 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.66 Total: -11.20 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.41 -8.59 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168752476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.207 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds