Wall clock time and date at job start Tue Mar 31 2020 05:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 300.00449 * 11 10 9 13 13 N 1.46898 * 109.47006 * 179.97438 * 12 11 10 14 14 C 1.46906 * 110.99961 * 84.99970 * 13 12 11 15 15 C 1.52998 * 109.46913 * 179.97438 * 14 13 12 16 16 O 1.42898 * 109.54698 * 65.00326 * 15 14 13 17 17 C 1.53181 * 109.54582 * 304.81811 * 15 14 13 18 18 C 1.53097 * 109.15988 * 183.24331 * 17 15 14 19 19 O 1.42902 * 109.48715 * 57.47409 * 18 17 15 20 20 C 1.42900 * 114.10201 * 298.89534 * 19 18 17 21 21 C 1.53088 * 109.41777 * 61.14939 * 20 19 18 22 22 C 1.52997 * 109.47164 * 59.99836 * 12 11 10 23 23 C 1.52996 * 109.46946 * 299.99459 * 9 7 2 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 31 31 H 1.00895 * 110.99835 * 208.94971 * 13 12 11 32 32 H 1.08996 * 109.46971 * 299.99790 * 14 13 12 33 33 H 1.08994 * 109.47376 * 59.99710 * 14 13 12 34 34 H 0.96697 * 114.00054 * 180.02562 * 16 15 14 35 35 H 1.09003 * 109.51989 * 303.06710 * 17 15 14 36 36 H 1.09003 * 109.51883 * 63.24842 * 17 15 14 37 37 H 1.08997 * 109.40806 * 297.49634 * 18 17 15 38 38 H 1.08997 * 109.49582 * 177.51260 * 18 17 15 39 39 H 1.09007 * 109.47274 * 301.16805 * 20 19 18 40 40 H 1.08995 * 109.49320 * 181.14764 * 20 19 18 41 41 H 1.08999 * 109.51877 * 182.48862 * 21 20 19 42 42 H 1.09004 * 109.57092 * 62.33799 * 21 20 19 43 43 H 1.09002 * 109.47045 * 180.02562 * 22 12 11 44 44 H 1.09001 * 109.47375 * 59.99966 * 22 12 11 45 45 H 1.08992 * 109.47554 * 299.99877 * 23 9 7 46 46 H 1.09004 * 109.47108 * 60.00127 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 0.6011 -5.0678 1.2507 13 7 -0.1338 -6.3397 1.2510 14 6 0.6793 -7.4173 1.8305 15 6 -0.1181 -8.7230 1.8141 16 8 -0.3603 -9.1183 0.4624 17 6 -1.4539 -8.5167 2.5349 18 6 -2.2089 -9.8477 2.5844 19 8 -1.4023 -10.8293 3.2386 20 6 -0.1621 -11.0976 2.5813 21 6 0.6761 -9.8175 2.5336 22 6 -0.3932 -3.9049 1.2507 23 6 0.3711 -2.5800 1.2495 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 2.8720 -3.6043 -0.8894 27 1 2.8720 -3.6043 0.8905 28 1 0.8534 -5.0452 -0.8885 29 1 2.1886 -5.8156 0.0016 30 1 1.2280 -5.0098 2.1405 31 1 -1.0133 -6.2490 1.7371 32 1 1.5903 -7.5402 1.2448 33 1 0.9395 -7.1638 2.8581 34 1 -0.8628 -9.9401 0.3770 35 1 -1.2695 -8.1659 3.5503 36 1 -2.0484 -7.7789 1.9960 37 1 -2.4298 -10.1768 1.5691 38 1 -3.1405 -9.7171 3.1350 39 1 -0.3563 -11.4431 1.5659 40 1 0.3809 -11.8675 3.1295 41 1 1.6034 -10.0093 1.9938 42 1 0.9058 -9.4934 3.5486 43 1 -1.0193 -3.9621 2.1411 44 1 -1.0201 -3.9629 0.3609 45 1 0.9974 -2.5221 2.1396 46 1 -0.3373 -1.7515 1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173327716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:10 Heat of formation + Delta-G solvation = -119.968110 kcal Electronic energy + Delta-G solvation = -23403.701509 eV Core-core repulsion = 20098.946525 eV Total energy + Delta-G solvation = -3304.754985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43976 -38.13399 -36.71109 -34.63382 -32.65094 -31.73073 -31.40928 -29.78623 -28.70458 -26.46391 -24.28018 -23.85682 -22.62501 -21.38632 -20.32974 -20.05799 -18.63828 -17.65621 -16.43483 -16.34228 -16.20271 -15.34163 -15.08653 -14.84857 -14.66454 -14.31662 -14.08055 -13.72462 -13.12218 -12.98013 -12.72206 -12.56015 -12.28978 -12.03629 -11.96070 -11.70254 -11.59444 -11.33277 -11.17909 -10.94064 -10.76808 -10.61090 -10.49324 -10.36162 -10.08351 -10.00058 -9.83122 -9.66091 -9.32056 -8.83445 -8.62490 -8.26355 -8.05861 -5.92810 -3.98751 3.34463 3.38987 3.41781 3.48908 4.01315 4.15835 4.43814 4.45113 4.47931 4.56074 4.70418 4.81085 4.93870 5.25187 5.30468 5.35163 5.36386 5.41242 5.48206 5.54299 5.64653 5.67549 5.77621 5.86549 5.91739 5.99516 6.23170 6.41086 6.43573 6.49408 6.64281 6.73806 6.80138 6.88519 7.02510 7.19879 7.29844 7.40121 7.51122 7.59677 7.68099 7.80567 8.09697 8.21302 8.53722 9.05453 9.65442 11.12678 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.046830 B = 0.003050 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.760439 B = 9177.421617 C = 9439.710631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.109 4.109 11 C -0.098 4.098 12 C 0.091 3.909 13 N -0.678 5.678 14 C 0.075 3.925 15 C 0.137 3.863 16 O -0.537 6.537 17 C -0.186 4.186 18 C 0.058 3.942 19 O -0.383 6.383 20 C 0.058 3.942 21 C -0.184 4.184 22 C -0.116 4.116 23 C -0.106 4.106 24 H 0.259 0.741 25 H 0.026 0.974 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.034 0.966 31 H 0.334 0.666 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.362 0.638 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.037 0.963 44 H 0.061 0.939 45 H 0.030 0.970 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.921 -20.786 6.074 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.147 4.147 11 C -0.137 4.137 12 C -0.017 4.017 13 N -0.310 5.310 14 C -0.054 4.054 15 C 0.096 3.904 16 O -0.342 6.342 17 C -0.225 4.225 18 C -0.019 4.019 19 O -0.302 6.302 20 C -0.019 4.019 21 C -0.222 4.222 22 C -0.154 4.154 23 C -0.145 4.145 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.153 0.847 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.209 0.791 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.049 0.951 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.626 -20.343 5.474 21.230 hybrid contribution 0.266 0.804 0.927 1.256 sum -2.360 -19.540 6.401 20.697 Atomic orbital electron populations 1.69864 1.05819 1.26320 1.51031 1.24967 0.94835 0.98929 0.95301 0.86719 0.79644 0.83437 0.78532 1.20358 1.21369 1.20409 1.21227 0.92829 0.90879 1.50135 0.92931 1.18638 0.92620 0.91429 0.94215 1.21643 0.98630 0.94613 0.99858 1.21495 0.97485 0.97268 0.97419 1.21608 0.95106 0.87584 0.97427 1.60523 1.06323 1.05280 1.58884 1.21900 0.96846 0.89237 0.97460 1.21226 0.93349 0.93759 0.82083 1.86767 1.77465 1.44928 1.25007 1.22900 0.98171 0.99144 1.02236 1.22614 0.94132 0.87507 0.97648 1.87957 1.30756 1.59429 1.52080 1.22591 0.85030 0.96666 0.97597 1.22875 1.00260 0.96602 1.02502 1.21787 0.97378 0.96044 1.00227 1.21573 0.99543 0.94578 0.98766 0.93085 0.95628 0.93453 0.93825 0.92001 0.94136 0.94771 0.84738 0.90217 0.94360 0.79133 0.90323 0.89024 0.92969 0.88394 0.93030 0.88469 0.89779 0.90065 0.94389 0.92001 0.95077 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.25 8.56 -34.44 -0.29 -14.55 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.24 2.10 -91.77 -0.19 1.05 16 10 C -0.11 -2.35 5.14 -26.73 -0.14 -2.48 16 11 C -0.10 -1.85 5.43 -26.73 -0.15 -2.00 16 12 C 0.09 1.59 2.49 -67.71 -0.17 1.42 16 13 N -0.68 -10.05 6.19 -106.73 -0.66 -10.71 16 14 C 0.08 0.96 4.74 -3.82 -0.02 0.94 16 15 C 0.14 1.42 0.89 -90.44 -0.08 1.34 16 16 O -0.54 -6.18 12.91 -35.23 -0.45 -6.63 16 17 C -0.19 -1.72 4.59 -26.59 -0.12 -1.85 16 18 C 0.06 0.46 6.59 37.21 0.25 0.71 16 19 O -0.38 -3.62 10.77 -35.23 -0.38 -4.00 16 20 C 0.06 0.44 6.59 37.20 0.25 0.68 16 21 C -0.18 -1.56 5.15 -26.59 -0.14 -1.70 16 22 C -0.12 -2.25 5.19 -26.76 -0.14 -2.39 16 23 C -0.11 -2.50 4.98 -26.76 -0.13 -2.63 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.04 0.70 7.45 -51.93 -0.39 0.32 16 30 H 0.03 0.61 7.80 -51.93 -0.41 0.20 16 31 H 0.33 4.56 6.31 -39.29 -0.25 4.31 16 32 H 0.08 1.10 7.43 -51.93 -0.39 0.72 16 33 H 0.04 0.46 8.06 -51.93 -0.42 0.04 16 34 H 0.36 2.96 5.97 45.56 0.27 3.24 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.90 6.71 -51.93 -0.35 0.55 16 37 H 0.05 0.37 6.93 -51.93 -0.36 0.01 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.33 6.93 -51.92 -0.36 -0.03 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -29.96 343.19 -9.46 -39.42 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.57 Total: 5.15 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -1.17 Total: -19.87 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.03 Total: -35.70 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.83 Total: -10.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.96 -9.46 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.552 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds