Wall clock time and date at job start Tue Mar 31 2020 05:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.62592 * 2 1 4 4 C 1.52997 * 109.47060 * 180.30945 * 3 2 1 5 5 N 1.46894 * 109.47515 * 180.02562 * 4 3 2 6 6 C 1.46900 * 111.00559 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47073 * 275.00312 * 6 5 4 8 8 C 1.52994 * 109.46948 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47329 * 60.00330 * 8 7 6 10 10 C 1.50703 * 109.47299 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99761 * 119.99753 * 10 9 8 12 12 C 1.37878 * 119.99803 * 299.99770 * 10 9 8 13 13 N 1.31516 * 119.99967 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99957 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46778 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47138 * 119.99532 * 14 12 10 17 17 H 1.48494 * 109.47015 * 239.99900 * 14 12 10 18 18 C 1.53006 * 109.46836 * 299.99739 * 9 8 7 19 19 C 1.52993 * 109.47556 * 154.99999 * 6 5 4 20 20 O 1.43745 * 109.50901 * 120.32049 * 2 1 3 21 21 C 1.44786 * 104.81660 * 95.49495 * 20 2 1 22 22 C 1.54915 * 101.72063 * 36.09845 * 21 20 2 23 23 O 1.43368 * 109.62629 * 239.61201 * 2 1 3 24 24 H 1.08996 * 109.47239 * 59.99739 * 1 2 3 25 25 H 1.09002 * 109.46851 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46763 * 299.99932 * 1 2 3 27 27 H 1.09002 * 109.47398 * 300.31114 * 3 2 1 28 28 H 1.09001 * 109.47194 * 60.31295 * 3 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 30 30 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 31 31 H 1.00905 * 110.99991 * 56.04757 * 5 4 3 32 32 H 1.08997 * 109.47150 * 34.99705 * 6 5 4 33 33 H 1.08997 * 109.47152 * 299.99816 * 7 6 5 34 34 H 1.08994 * 109.47007 * 59.99658 * 7 6 5 35 35 H 1.08997 * 109.47528 * 299.99548 * 8 7 6 36 36 H 1.09001 * 109.46793 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.47454 * 59.99173 * 9 8 7 38 38 H 0.96998 * 120.00068 * 180.02562 * 13 12 10 39 39 H 1.09008 * 109.46738 * 300.00395 * 18 9 8 40 40 H 1.08994 * 109.47007 * 179.97438 * 18 9 8 41 41 H 1.08998 * 109.47213 * 300.00452 * 19 6 5 42 42 H 1.09007 * 109.46721 * 60.00070 * 19 6 5 43 43 H 1.09003 * 110.97772 * 277.99057 * 21 20 2 44 44 H 1.08994 * 111.01236 * 154.22524 * 21 20 2 45 45 H 1.09001 * 110.69320 * 206.04439 * 22 21 20 46 46 H 1.08999 * 110.69130 * 82.84227 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 3.5739 1.4370 -0.0078 5 7 4.0674 2.8205 -0.0072 6 6 5.5359 2.8558 -0.0152 7 6 6.0567 2.7388 1.4188 8 6 7.5862 2.7749 1.4103 9 6 8.0619 4.0954 0.8012 10 6 9.5685 4.1306 0.7923 11 1 10.1009 4.2271 -0.1424 12 6 10.2672 4.0398 1.9775 13 7 9.6188 3.9229 3.1157 14 14 12.1346 4.0842 1.9666 15 1 12.6183 4.2211 0.5693 16 1 12.6069 5.2404 2.7699 17 1 12.6631 2.8259 2.5518 18 6 7.5411 4.2124 -0.6328 19 6 6.0112 4.1764 -0.6242 20 8 2.0101 -0.6840 1.1696 21 6 2.2601 -2.0403 0.7288 22 6 2.7855 -1.8117 -0.7104 23 8 2.0116 -0.6831 -1.1649 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6775 1.9576 -0.8872 28 1 1.6866 1.9543 0.8928 29 1 3.9404 0.9205 0.8794 30 1 3.9314 0.9238 -0.9005 31 1 3.6973 3.3361 0.7773 32 1 5.9161 2.0244 -0.6087 33 1 5.6766 3.5702 2.0123 34 1 5.7182 1.7980 1.8526 35 1 7.9661 1.9433 0.8169 36 1 7.9572 2.6920 2.4319 37 1 7.6821 4.9270 1.3946 38 1 10.1103 3.8593 3.9496 39 1 7.9210 3.3806 -1.2262 40 1 7.8796 5.1532 -1.0666 41 1 5.6401 4.2598 -1.6457 42 1 5.6310 5.0078 -0.0306 43 1 1.3394 -2.6237 0.7201 44 1 3.0173 -2.5195 1.3492 45 1 2.5948 -2.6855 -1.3335 46 1 3.8484 -1.5703 -0.6986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173327892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:57 Heat of formation + Delta-G solvation = -115.940495 kcal Electronic energy + Delta-G solvation = -23279.631729 eV Core-core repulsion = 19975.051395 eV Total energy + Delta-G solvation = -3304.580334 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82986 -38.17788 -35.30211 -35.18157 -33.24255 -32.04464 -29.74323 -29.50564 -28.72854 -27.23666 -24.24888 -23.48012 -22.46810 -21.49311 -21.05068 -20.41949 -18.72027 -17.56758 -16.67411 -16.27272 -16.08606 -15.34813 -14.64249 -14.58673 -14.40023 -14.33572 -13.71209 -13.33450 -13.19678 -13.07060 -12.84402 -12.64332 -12.45871 -12.33150 -12.14027 -12.00346 -11.60509 -11.33447 -11.19273 -11.07657 -10.96221 -10.68626 -10.40454 -10.37918 -10.28718 -10.09259 -9.85224 -9.75942 -9.32511 -8.93944 -8.61370 -8.28199 -7.88916 -5.93237 -3.99167 3.17221 3.31703 3.39771 3.44020 3.71934 4.26110 4.33328 4.47822 4.57336 4.75274 4.79755 4.99877 5.09477 5.21259 5.30666 5.35377 5.36985 5.40699 5.49758 5.54772 5.65819 5.73229 5.78137 5.83125 5.98297 6.09608 6.13447 6.25333 6.37189 6.45543 6.48718 6.72581 6.74648 6.88249 6.90819 6.99657 7.19199 7.28465 7.46219 7.59321 7.74154 7.80713 8.08636 8.21376 8.53630 9.05635 9.65240 11.12120 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.028967 B = 0.003246 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.382310 B = 8624.766139 C = 9012.599062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.255 3.745 3 C -0.118 4.118 4 C 0.064 3.936 5 N -0.690 5.690 6 C 0.092 3.908 7 C -0.142 4.142 8 C -0.105 4.105 9 C 0.048 3.952 10 C -0.510 4.510 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.891 5.891 14 Si 0.888 3.112 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.109 4.109 19 C -0.100 4.100 20 O -0.368 6.368 21 C 0.015 3.985 22 C 0.020 3.980 23 O -0.375 6.375 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.336 0.664 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.038 0.962 35 H 0.031 0.969 36 H 0.090 0.910 37 H 0.024 0.976 38 H 0.258 0.742 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.687 -10.654 -5.208 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.178 3.822 3 C -0.156 4.156 4 C -0.065 4.065 5 N -0.319 5.319 6 C -0.018 4.018 7 C -0.182 4.182 8 C -0.143 4.143 9 C 0.030 3.970 10 C -0.549 4.549 11 H 0.072 0.928 12 C -0.141 4.141 13 N -0.531 5.531 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.147 4.147 19 C -0.138 4.138 20 O -0.289 6.289 21 C -0.061 4.061 22 C -0.057 4.057 23 O -0.297 6.297 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.153 0.847 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.108 0.892 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.126 0.874 45 H 0.116 0.884 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.729 -10.436 -5.716 21.352 hybrid contribution 1.233 -0.548 1.105 1.743 sum -16.496 -10.984 -4.611 20.348 Atomic orbital electron populations 1.22353 0.93834 1.03023 1.03466 1.23422 0.92650 0.91368 0.74785 1.21897 0.96997 0.93062 1.03686 1.21806 0.93302 0.90634 1.00794 1.60698 1.09259 1.12665 1.49272 1.21607 0.85117 0.98654 0.96378 1.22273 1.00450 0.99566 0.95862 1.21542 0.89837 0.98924 1.04025 1.18658 0.94697 0.93722 0.89934 1.21305 0.91603 1.49285 0.92672 0.92772 1.24980 0.98102 0.95337 0.95704 1.69893 1.34821 1.50827 0.97524 0.86601 0.86291 0.77485 0.78005 1.19835 1.21121 1.21157 1.21639 0.92573 0.99978 1.00490 1.21496 0.96951 0.96069 0.99333 1.89297 1.86114 1.21513 1.31977 1.24354 1.01287 0.85284 0.95215 1.24194 0.97026 0.89654 0.94804 1.88904 1.69543 1.41752 1.29457 0.90615 0.92015 0.90578 0.89264 0.90424 0.94814 0.91162 0.84716 0.91436 0.92862 0.94371 0.95019 0.89216 0.95803 0.93237 0.93594 0.93420 0.93126 0.92831 0.90885 0.87378 0.88414 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.19 37.16 0.34 -1.15 16 2 C 0.25 2.82 1.06 -26.73 -0.03 2.79 16 3 C -0.12 -1.39 4.98 -26.73 -0.13 -1.52 16 4 C 0.06 0.89 5.19 -3.83 -0.02 0.87 16 5 N -0.69 -10.51 6.25 -106.73 -0.67 -11.17 16 6 C 0.09 1.62 2.47 -67.71 -0.17 1.45 16 7 C -0.14 -2.80 5.17 -26.73 -0.14 -2.94 16 8 C -0.10 -2.49 4.98 -26.73 -0.13 -2.63 16 9 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 10 C -0.51 -14.20 8.56 -34.44 -0.29 -14.50 16 11 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 13 N -0.89 -25.72 11.32 55.43 0.63 -25.09 16 14 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 18 C -0.11 -2.32 5.14 -26.71 -0.14 -2.46 16 19 C -0.10 -1.85 5.53 -26.71 -0.15 -2.00 16 20 O -0.37 -4.33 10.34 -59.04 -0.61 -4.94 16 21 C 0.02 0.13 7.91 38.17 0.30 0.43 16 22 C 0.02 0.17 8.07 38.17 0.31 0.48 16 23 O -0.38 -4.35 10.17 -59.04 -0.60 -4.95 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.03 0.51 6.98 -51.93 -0.36 0.15 16 30 H 0.07 1.04 7.58 -51.93 -0.39 0.64 16 31 H 0.34 4.89 8.47 -39.29 -0.33 4.56 16 32 H 0.07 1.24 7.80 -51.93 -0.40 0.84 16 33 H 0.05 1.07 8.13 -51.93 -0.42 0.64 16 34 H 0.04 0.72 7.45 -51.93 -0.39 0.33 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 37 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -29.77 355.28 -9.95 -39.73 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -8.50 Total: 3.16 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -0.54 Total: -18.58 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.04 Total: -36.27 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -1.21 Total: -9.89 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.77 -9.95 -39.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.212 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds