Wall clock time and date at job start Tue Mar 31 2020 05:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00126 * 2 1 4 4 H 1.48504 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47040 * 299.99931 * 3 2 1 6 6 H 1.48494 * 109.47092 * 60.00278 * 3 2 1 7 7 C 1.37883 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99850 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99809 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47100 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47329 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46841 * 59.99958 * 11 10 9 13 13 N 1.46900 * 109.46790 * 60.00358 * 12 11 10 14 14 C 1.46902 * 111.00194 * 154.99888 * 13 12 11 15 15 H 1.08996 * 109.46849 * 34.99591 * 14 13 12 16 16 C 1.52996 * 109.47055 * 274.99970 * 14 13 12 17 17 O 1.42907 * 109.46992 * 295.57648 * 16 14 13 18 18 C 1.53000 * 109.47170 * 154.99771 * 14 13 12 19 19 H 1.09002 * 110.80551 * 58.54009 * 18 14 13 20 20 C 1.54812 * 110.90827 * 294.91401 * 18 14 13 21 21 C 1.54104 * 104.18681 * 220.92327 * 20 18 14 22 22 O 1.43742 * 107.29144 * 357.97053 * 21 20 18 23 23 C 1.44380 * 106.98070 * 26.51288 * 22 21 20 24 24 C 1.52990 * 109.47438 * 300.00334 * 12 11 10 25 25 C 1.52996 * 109.47101 * 60.00117 * 9 7 2 26 26 H 0.97000 * 119.99565 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47111 * 300.00236 * 9 7 2 28 28 H 1.09004 * 109.46875 * 59.99900 * 10 9 7 29 29 H 1.08997 * 109.47313 * 300.00090 * 10 9 7 30 30 H 1.08997 * 109.47166 * 300.00388 * 11 10 9 31 31 H 1.08996 * 109.47610 * 180.02562 * 11 10 9 32 32 H 1.09004 * 109.47189 * 179.97438 * 12 11 10 33 33 H 1.00907 * 110.99765 * 278.95073 * 13 12 11 34 34 H 1.09000 * 109.47133 * 55.57480 * 16 14 13 35 35 H 1.08996 * 109.47241 * 175.57658 * 16 14 13 36 36 H 0.96694 * 113.99525 * 180.02562 * 17 16 14 37 37 H 1.09001 * 110.48449 * 339.59235 * 20 18 14 38 38 H 1.08997 * 110.48775 * 102.11278 * 20 18 14 39 39 H 1.08998 * 109.87905 * 117.39515 * 21 20 18 40 40 H 1.09002 * 109.87689 * 238.39280 * 21 20 18 41 41 H 1.08993 * 110.61870 * 201.43920 * 23 22 21 42 42 H 1.09001 * 110.61593 * 78.43820 * 23 22 21 43 43 H 1.09000 * 109.47815 * 179.97438 * 24 12 11 44 44 H 1.09006 * 109.47154 * 300.00015 * 24 12 11 45 45 H 1.09002 * 109.47553 * 300.00181 * 25 9 7 46 46 H 1.08997 * 109.47040 * 60.00076 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 0.6002 -5.0684 -1.2489 13 7 1.4444 -4.9910 -2.4485 14 6 0.7894 -5.6337 -3.5957 15 1 -0.2865 -5.4683 -3.5392 16 6 1.0764 -7.1363 -3.5708 17 8 2.4771 -7.3567 -3.7482 18 6 1.3303 -5.0326 -4.8945 19 1 2.4104 -5.1633 -4.9612 20 6 0.9465 -3.5375 -5.0132 21 6 0.5597 -3.3633 -6.4947 22 8 0.7624 -4.6312 -7.1411 23 6 0.6206 -5.6489 -6.1269 24 6 -0.3940 -3.9056 -1.2489 25 6 0.3710 -2.5799 -1.2494 26 1 -0.4849 0.8401 0.0004 27 1 0.6247 -2.5571 0.8896 28 1 2.8719 -3.6043 0.8895 29 1 2.8719 -3.6044 -0.8905 30 1 0.8538 -5.0446 0.8903 31 1 2.1885 -5.8156 0.0006 32 1 0.0555 -6.0126 -1.2487 33 1 1.6861 -4.0343 -2.6595 34 1 0.7619 -7.5504 -2.6128 35 1 0.5269 -7.6245 -4.3756 36 1 2.7321 -8.2894 -3.7434 37 1 0.0981 -3.3091 -4.3681 38 1 1.7972 -2.9041 -4.7619 39 1 -0.4874 -3.0708 -6.5725 40 1 1.1917 -2.6043 -6.9560 41 1 1.1165 -6.5694 -6.4348 42 1 -0.4321 -5.8323 -5.9116 43 1 -1.0206 -3.9632 -2.1389 44 1 -1.0204 -3.9630 -0.3587 45 1 -0.3373 -1.7514 -1.2491 46 1 0.9973 -2.5220 -2.1396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329006.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:54 Heat of formation + Delta-G solvation = -115.733949 kcal Electronic energy + Delta-G solvation = -24328.751108 eV Core-core repulsion = 21024.179730 eV Total energy + Delta-G solvation = -3304.571378 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89661 -38.38384 -36.79840 -34.56546 -32.87637 -31.17597 -29.96788 -29.54630 -28.36084 -26.87716 -24.65725 -23.12556 -21.91879 -21.50522 -20.60855 -19.95568 -18.09322 -17.23910 -16.61364 -16.38345 -16.30646 -15.12165 -15.02082 -14.63556 -14.23745 -14.08269 -13.83444 -13.40166 -13.32278 -13.22056 -12.68311 -12.32972 -12.14484 -11.95383 -11.61108 -11.49116 -11.38913 -11.25230 -10.97132 -10.74545 -10.65401 -10.53871 -10.45011 -10.14360 -9.99767 -9.90410 -9.83928 -9.69056 -9.31255 -8.88868 -8.61775 -8.27653 -7.87167 -5.96622 -4.02156 3.29633 3.38206 3.42675 3.91207 4.24419 4.45183 4.48291 4.60351 4.80824 4.97773 5.12923 5.19405 5.28432 5.32763 5.41142 5.48447 5.52648 5.58579 5.66101 5.70720 5.72238 5.82086 5.83786 5.94437 6.11298 6.19232 6.26981 6.30932 6.43162 6.51269 6.63154 6.68184 6.83338 6.84092 7.00929 7.20988 7.24086 7.51140 7.52966 7.75156 7.77429 7.87823 8.05416 8.17260 8.50869 9.02973 9.62685 11.08700 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016865 B = 0.005354 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.866977 B = 5228.647467 C = 6250.350879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.107 4.107 11 C -0.102 4.102 12 C 0.091 3.909 13 N -0.668 5.668 14 C 0.098 3.902 15 H 0.054 0.946 16 C 0.089 3.911 17 O -0.553 6.553 18 C -0.114 4.114 19 H 0.101 0.899 20 C -0.160 4.160 21 C 0.049 3.951 22 O -0.382 6.382 23 C 0.055 3.945 24 C -0.149 4.149 25 C -0.106 4.106 26 H 0.257 0.743 27 H 0.022 0.978 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.354 0.646 34 H 0.043 0.957 35 H 0.038 0.962 36 H 0.368 0.632 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.036 0.964 44 H 0.057 0.943 45 H 0.091 0.909 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.084 -13.220 -9.047 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.018 4.018 13 N -0.303 5.303 14 C -0.013 4.013 15 H 0.072 0.928 16 C 0.010 3.990 17 O -0.356 6.356 18 C -0.133 4.133 19 H 0.120 0.880 20 C -0.198 4.198 21 C -0.028 4.028 22 O -0.301 6.301 23 C -0.022 4.022 24 C -0.188 4.188 25 C -0.144 4.144 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.177 0.823 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.213 0.787 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.805 -12.996 -9.132 15.904 hybrid contribution -0.504 1.087 0.144 1.207 sum -1.309 -11.909 -8.988 14.977 Atomic orbital electron populations 1.69886 1.05835 1.26059 1.51392 1.24965 0.94800 0.98936 0.95331 0.86624 0.80288 0.84139 0.77482 1.19809 1.21167 1.21152 1.21305 0.92950 0.90763 1.49636 0.92758 1.18653 0.92673 0.91770 0.93932 1.21566 0.98570 0.94059 1.00226 1.21490 0.98170 0.98853 0.95454 1.21548 0.92713 0.96677 0.90905 1.60698 1.43100 1.24304 1.02221 1.21495 0.96210 0.93087 0.90489 0.92812 1.22217 0.82443 0.95854 0.98494 1.86620 1.23376 1.29477 1.96122 1.22781 1.02615 0.93925 0.93992 0.88048 1.23098 1.03041 0.96943 0.96704 1.23129 1.00528 0.86715 0.92386 1.88838 1.92881 1.15436 1.32899 1.23562 0.99202 0.92117 0.87314 1.22293 0.98261 0.98171 1.00114 1.21595 0.99425 0.94707 0.98692 0.93259 0.95973 0.93953 0.92797 0.92949 0.93071 0.92536 0.82286 0.93839 0.94382 0.78706 0.90332 0.89808 0.92555 0.89883 0.89070 0.92603 0.94496 0.92389 0.89114 0.95029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -13.77 8.56 -34.44 -0.29 -14.07 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.16 2.10 -91.78 -0.19 0.97 16 10 C -0.11 -2.22 4.90 -26.73 -0.13 -2.35 16 11 C -0.10 -1.79 5.64 -26.73 -0.15 -1.95 16 12 C 0.09 1.49 2.66 -67.71 -0.18 1.31 16 13 N -0.67 -10.51 5.51 -99.74 -0.55 -11.06 16 14 C 0.10 1.28 1.66 -67.71 -0.11 1.16 16 15 H 0.05 0.71 7.09 -51.93 -0.37 0.34 16 16 C 0.09 0.99 6.50 37.16 0.24 1.23 16 17 O -0.55 -6.54 12.81 -35.23 -0.45 -6.99 16 18 C -0.11 -1.47 2.52 -88.61 -0.22 -1.69 16 19 H 0.10 1.47 7.69 -51.93 -0.40 1.07 16 20 C -0.16 -2.13 5.57 -25.20 -0.14 -2.27 16 21 C 0.05 0.61 7.70 37.73 0.29 0.90 16 22 O -0.38 -5.23 11.52 -35.23 -0.41 -5.64 16 23 C 0.06 0.64 6.21 38.21 0.24 0.88 16 24 C -0.15 -2.73 5.50 -26.71 -0.15 -2.87 16 25 C -0.11 -2.35 4.73 -26.71 -0.13 -2.48 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.05 1.14 7.21 -51.93 -0.37 0.77 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.84 7.10 -51.93 -0.37 0.47 16 33 H 0.35 6.18 4.29 -39.29 -0.17 6.01 16 34 H 0.04 0.49 7.38 -51.93 -0.38 0.11 16 35 H 0.04 0.34 7.52 -51.93 -0.39 -0.05 16 36 H 0.37 2.68 9.12 45.56 0.42 3.10 16 37 H 0.08 1.11 7.84 -51.93 -0.41 0.70 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.59 8.05 -51.93 -0.42 0.18 16 43 H 0.04 0.62 7.43 -51.93 -0.39 0.24 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 46 H 0.03 0.69 6.26 -51.93 -0.33 0.36 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -29.25 343.95 -8.88 -38.12 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.23 Total: 8.33 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -1.02 Total: -19.66 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.08 Total: -35.56 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.86 Total: -12.62 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.25 -8.88 -38.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329006.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.614 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds