Wall clock time and date at job start Tue Mar 31 2020 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00330 * 2 1 4 4 H 1.48497 * 109.47631 * 239.99804 * 3 2 1 5 5 H 1.48504 * 109.46696 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47602 * 119.99376 * 3 2 1 7 7 C 1.37876 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00628 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99734 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47147 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47454 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47254 * 59.99854 * 11 10 9 13 13 N 1.46903 * 109.47004 * 60.00172 * 12 11 10 14 14 C 1.46899 * 110.99701 * 155.00370 * 13 12 11 15 15 H 1.09002 * 109.47432 * 34.99939 * 14 13 12 16 16 C 1.52999 * 109.47123 * 274.99985 * 14 13 12 17 17 O 1.42903 * 109.47256 * 295.00582 * 16 14 13 18 18 C 1.53002 * 109.46982 * 155.00191 * 14 13 12 19 19 H 1.09001 * 110.45454 * 57.39334 * 18 14 13 20 20 C 1.54505 * 110.50945 * 179.97438 * 18 14 13 21 21 C 1.54480 * 104.06452 * 118.64438 * 20 18 14 22 22 O 1.44425 * 104.79954 * 23.97889 * 21 20 18 23 23 C 1.44425 * 105.27406 * 319.48542 * 22 21 20 24 24 C 1.53005 * 109.46930 * 300.00560 * 12 11 10 25 25 C 1.52998 * 109.46963 * 60.00258 * 9 7 2 26 26 H 0.97004 * 119.99862 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47092 * 300.00061 * 9 7 2 28 28 H 1.09003 * 109.47137 * 60.00067 * 10 9 7 29 29 H 1.09004 * 109.47350 * 300.00452 * 10 9 7 30 30 H 1.09004 * 109.46990 * 300.00402 * 11 10 9 31 31 H 1.09001 * 109.47568 * 179.97438 * 11 10 9 32 32 H 1.09000 * 109.47246 * 180.02562 * 12 11 10 33 33 H 1.00901 * 110.99645 * 278.95219 * 13 12 11 34 34 H 1.08997 * 109.47286 * 175.00142 * 16 14 13 35 35 H 1.09008 * 109.47201 * 54.99922 * 16 14 13 36 36 H 0.96700 * 114.00311 * 180.02562 * 17 16 14 37 37 H 1.09007 * 110.50846 * 237.28863 * 20 18 14 38 38 H 1.08999 * 110.51388 * 359.97438 * 20 18 14 39 39 H 1.08997 * 110.37296 * 142.80465 * 21 20 18 40 40 H 1.08994 * 110.37017 * 265.03038 * 21 20 18 41 41 H 1.09003 * 110.37395 * 281.68081 * 23 22 21 42 42 H 1.09005 * 110.37071 * 159.34599 * 23 22 21 43 43 H 1.09003 * 109.47059 * 179.97438 * 24 12 11 44 44 H 1.08997 * 109.47170 * 299.99824 * 24 12 11 45 45 H 1.09006 * 109.47313 * 299.99529 * 25 9 7 46 46 H 1.08996 * 109.47457 * 59.99429 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 0.6010 -5.0678 -1.2497 13 7 1.4460 -4.9897 -2.4488 14 6 0.7915 -5.6317 -3.5966 15 1 -0.2844 -5.4663 -3.5407 16 6 1.0785 -7.1343 -3.5725 17 8 2.4775 -7.3552 -3.7626 18 6 1.3333 -5.0298 -4.8948 19 1 2.4159 -5.1457 -4.9457 20 6 0.6605 -5.6894 -6.1194 21 6 -0.0607 -4.5205 -6.8264 22 8 0.6557 -3.3381 -6.4085 23 6 0.9389 -3.5405 -5.0068 24 6 -0.3932 -3.9048 -1.2497 25 6 0.3719 -2.5804 -1.2491 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8719 -3.6043 -0.8894 30 1 0.8532 -5.0451 0.8896 31 1 2.1885 -5.8156 -0.0006 32 1 0.0557 -6.0116 -1.2499 33 1 1.6877 -4.0328 -2.6590 34 1 0.5215 -7.6235 -4.3715 35 1 0.7729 -7.5472 -2.6110 36 1 2.7325 -8.2880 -3.7589 37 1 1.4108 -6.1289 -6.7767 38 1 -0.0577 -6.4445 -5.8000 39 1 -0.0018 -4.6372 -7.9085 40 1 -1.1016 -4.4683 -6.5073 41 1 0.0518 -3.3366 -4.4071 42 1 1.7658 -2.9043 -4.6911 43 1 -1.0193 -3.9621 -2.1401 44 1 -1.0202 -3.9628 -0.3599 45 1 -0.3365 -1.7520 -1.2495 46 1 0.9989 -2.5228 -2.1388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:57 Heat of formation + Delta-G solvation = -113.739987 kcal Electronic energy + Delta-G solvation = -24373.629711 eV Core-core repulsion = 21069.144798 eV Total energy + Delta-G solvation = -3304.484913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.93732 -38.33870 -36.80920 -34.51123 -32.88938 -31.35249 -29.66635 -29.50054 -28.24709 -27.18810 -24.56267 -22.83080 -22.37900 -21.51219 -20.58114 -19.79177 -18.07888 -17.22830 -16.67256 -16.29842 -16.26372 -15.24757 -14.92332 -14.63076 -14.31833 -14.08579 -13.79782 -13.48565 -13.30640 -13.05459 -12.59029 -12.30104 -12.10101 -11.86701 -11.77725 -11.57441 -11.37420 -11.27336 -10.94808 -10.69683 -10.67281 -10.57880 -10.34258 -10.12482 -10.00651 -9.88644 -9.83214 -9.73493 -9.29506 -8.86994 -8.61461 -8.24755 -7.88048 -5.93796 -3.99561 3.35274 3.39766 3.42965 3.98786 4.25944 4.44000 4.48244 4.62934 4.81789 4.89182 5.00987 5.23983 5.33857 5.35861 5.40478 5.48294 5.55460 5.58096 5.65705 5.68392 5.70839 5.78615 5.89025 5.90500 6.01636 6.19716 6.26420 6.30678 6.43796 6.52026 6.64164 6.68962 6.82265 6.84648 7.02122 7.22136 7.25407 7.50676 7.54395 7.74658 7.79371 7.86087 8.07139 8.19395 8.53030 9.04971 9.65245 11.11517 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.005410 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.889626 B = 5174.041942 C = 6163.715181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.107 4.107 11 C -0.102 4.102 12 C 0.091 3.909 13 N -0.669 5.669 14 C 0.096 3.904 15 H 0.054 0.946 16 C 0.090 3.910 17 O -0.553 6.553 18 C -0.116 4.116 19 H 0.099 0.901 20 C -0.146 4.146 21 C 0.042 3.958 22 O -0.375 6.375 23 C 0.043 3.957 24 C -0.150 4.150 25 C -0.107 4.107 26 H 0.259 0.741 27 H 0.022 0.978 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.352 0.648 34 H 0.039 0.961 35 H 0.043 0.957 36 H 0.367 0.633 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.036 0.964 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.411 -14.844 -9.748 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.549 4.549 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.018 4.018 13 N -0.304 5.304 14 C -0.014 4.014 15 H 0.072 0.928 16 C 0.011 3.989 17 O -0.356 6.356 18 C -0.135 4.135 19 H 0.118 0.882 20 C -0.184 4.184 21 C -0.035 4.035 22 O -0.293 6.293 23 C -0.034 4.034 24 C -0.189 4.189 25 C -0.145 4.145 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.176 0.824 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.212 0.788 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.128 -14.401 -9.740 17.422 hybrid contribution -0.478 0.759 0.006 0.897 sum -1.605 -13.642 -9.734 16.835 Atomic orbital electron populations 1.69860 1.05842 1.26309 1.51137 1.24956 0.94802 0.98922 0.95273 0.86736 0.79668 0.83454 0.78596 1.20318 1.21432 1.20375 1.21223 0.92877 0.90778 1.50007 0.92852 1.18640 0.92648 0.91743 0.93892 1.21571 0.98583 0.94050 1.00242 1.21493 0.98167 0.98866 0.95433 1.21555 0.92710 0.96705 0.90875 1.60706 1.43217 1.24167 1.02326 1.21561 0.96192 0.93235 0.90462 0.92843 1.22224 0.82456 0.95823 0.98348 1.86615 1.23618 1.29413 1.95933 1.22587 1.02714 0.94469 0.93686 0.88225 1.22980 1.00029 0.98371 0.97067 1.23406 0.95577 0.84686 0.99808 1.89132 1.75904 1.39704 1.24580 1.23641 1.01135 0.95832 0.82796 1.22283 0.98264 0.98160 1.00152 1.21586 0.99448 0.94752 0.98694 0.93127 0.95958 0.93928 0.92788 0.92925 0.93076 0.92521 0.82427 0.94323 0.93922 0.78772 0.90633 0.90720 0.89448 0.92560 0.91982 0.88507 0.94491 0.92335 0.89064 0.95095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -13.95 8.56 -34.44 -0.29 -14.24 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.20 2.10 -91.77 -0.19 1.00 16 10 C -0.11 -2.23 4.90 -26.73 -0.13 -2.36 16 11 C -0.10 -1.80 5.64 -26.73 -0.15 -1.95 16 12 C 0.09 1.50 2.65 -67.71 -0.18 1.32 16 13 N -0.67 -10.59 5.52 -99.73 -0.55 -11.14 16 14 C 0.10 1.26 1.59 -67.71 -0.11 1.15 16 15 H 0.05 0.71 7.06 -51.93 -0.37 0.34 16 16 C 0.09 1.01 6.44 37.16 0.24 1.25 16 17 O -0.55 -6.55 12.81 -35.23 -0.45 -7.00 16 18 C -0.12 -1.49 2.53 -89.05 -0.23 -1.72 16 19 H 0.10 1.44 7.70 -51.93 -0.40 1.04 16 20 C -0.15 -1.53 6.25 -25.16 -0.16 -1.69 16 21 C 0.04 0.48 7.63 37.93 0.29 0.77 16 22 O -0.37 -5.66 11.65 -35.23 -0.41 -6.07 16 23 C 0.04 0.63 6.17 37.93 0.23 0.86 16 24 C -0.15 -2.76 5.50 -26.75 -0.15 -2.90 16 25 C -0.11 -2.40 4.72 -26.76 -0.13 -2.52 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 1.15 7.21 -51.93 -0.37 0.77 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.85 7.10 -51.93 -0.37 0.48 16 33 H 0.35 6.20 4.25 -39.29 -0.17 6.03 16 34 H 0.04 0.35 6.68 -51.93 -0.35 0.01 16 35 H 0.04 0.48 7.38 -51.92 -0.38 0.10 16 36 H 0.37 2.70 9.12 45.56 0.42 3.11 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.67 6.44 -51.93 -0.33 0.34 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.95 7.83 -51.93 -0.41 0.55 16 42 H 0.10 1.49 8.11 -51.93 -0.42 1.07 16 43 H 0.04 0.63 7.43 -51.93 -0.39 0.25 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 46 H 0.03 0.68 6.25 -51.93 -0.32 0.36 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -29.63 341.95 -8.80 -38.43 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -7.10 Total: 8.36 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -1.05 Total: -19.44 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.08 Total: -35.89 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.86 Total: -13.07 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.63 -8.80 -38.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.307 kcal (2) G-P(sol) polarization free energy of solvation -29.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds