Wall clock time and date at job start Tue Mar 31 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 119.99894 * 2 1 4 4 H 1.48502 * 109.47368 * 269.99982 * 3 2 1 5 5 H 1.48499 * 109.47118 * 30.00187 * 3 2 1 6 6 H 1.48499 * 109.46948 * 150.00121 * 3 2 1 7 7 C 1.37881 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46955 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46955 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47041 * 60.00168 * 11 10 9 13 13 N 1.46894 * 109.47308 * 59.99849 * 12 11 10 14 14 C 1.46897 * 111.00151 * 86.43354 * 13 12 11 15 15 H 1.09005 * 109.47178 * 325.25829 * 14 13 12 16 16 C 1.53006 * 109.47197 * 85.25769 * 14 13 12 17 17 O 1.42898 * 109.46822 * 64.34395 * 16 14 13 18 18 C 1.53006 * 109.47642 * 205.25911 * 14 13 12 19 19 H 1.09002 * 110.74904 * 297.98527 * 18 14 13 20 20 C 1.55564 * 111.01572 * 174.40611 * 18 14 13 21 21 C 1.54938 * 100.82466 * 207.60734 * 20 18 14 22 22 O 1.43647 * 105.22756 * 36.44074 * 21 20 18 23 23 C 1.43237 * 109.96803 * 335.52761 * 22 21 20 24 24 C 1.52993 * 109.46929 * 299.99398 * 12 11 10 25 25 C 1.53001 * 109.47289 * 59.99709 * 9 7 2 26 26 H 0.97003 * 120.00436 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46857 * 299.99300 * 9 7 2 28 28 H 1.08999 * 109.47082 * 59.99688 * 10 9 7 29 29 H 1.09004 * 109.46815 * 299.99708 * 10 9 7 30 30 H 1.08996 * 109.47104 * 299.99760 * 11 10 9 31 31 H 1.09003 * 109.46869 * 179.97438 * 11 10 9 32 32 H 1.09004 * 109.46498 * 179.97438 * 12 11 10 33 33 H 1.00901 * 111.00237 * 322.48158 * 13 12 11 34 34 H 1.08996 * 109.46948 * 184.33944 * 16 14 13 35 35 H 1.08996 * 109.47143 * 304.34212 * 16 14 13 36 36 H 0.96703 * 113.99879 * 180.02562 * 17 16 14 37 37 H 1.09003 * 111.22097 * 89.70419 * 20 18 14 38 38 H 1.09005 * 111.13074 * 325.46746 * 20 18 14 39 39 H 1.09002 * 110.31128 * 277.47444 * 21 20 18 40 40 H 1.09000 * 110.30921 * 155.40774 * 21 20 18 41 41 H 1.09000 * 109.83260 * 121.22259 * 23 22 21 42 42 H 1.09006 * 109.82569 * 242.10356 * 23 22 21 43 43 H 1.09005 * 109.47311 * 180.02562 * 24 12 11 44 44 H 1.08998 * 109.47859 * 300.00320 * 24 12 11 45 45 H 1.09003 * 109.47151 * 299.99810 * 25 9 7 46 46 H 1.08996 * 109.47504 * 59.99988 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 0.6002 -5.0685 -1.2478 13 7 1.4443 -4.9910 -2.4475 14 6 1.9417 -6.3198 -2.8279 15 1 2.1268 -6.9093 -1.9298 16 6 0.8979 -7.0261 -3.6954 17 8 0.7294 -6.3066 -4.9185 18 6 3.2440 -6.1703 -3.6171 19 1 3.0752 -5.6135 -4.5388 20 6 3.8768 -7.5593 -3.9176 21 6 5.3762 -7.1811 -4.0147 22 8 5.5723 -6.1587 -3.0249 23 6 4.3327 -5.4928 -2.7573 24 6 -0.3941 -3.9057 -1.2477 25 6 0.3717 -2.5805 -1.2490 26 1 -0.4851 0.8400 -0.0004 27 1 0.6241 -2.5567 0.8903 28 1 2.8719 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 0.8539 -5.0446 0.8914 31 1 2.1885 -5.8156 0.0007 32 1 0.0555 -6.0127 -1.2475 33 1 2.2071 -4.3446 -2.3118 34 1 1.2328 -8.0401 -3.9136 35 1 -0.0521 -7.0640 -3.1623 36 1 0.0804 -6.6981 -5.5189 37 1 3.5115 -7.9634 -4.8618 38 1 3.6999 -8.2571 -3.0991 39 1 5.6054 -6.7950 -5.0080 40 1 5.9999 -8.0470 -3.7929 41 1 4.0822 -5.5882 -1.7008 42 1 4.4139 -4.4390 -3.0242 43 1 -1.0214 -3.9639 -2.1372 44 1 -1.0204 -3.9631 -0.3575 45 1 -0.3366 -1.7520 -1.2494 46 1 0.9986 -2.5230 -2.1388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:00 Heat of formation + Delta-G solvation = -114.133312 kcal Electronic energy + Delta-G solvation = -24261.488982 eV Core-core repulsion = 20956.987013 eV Total energy + Delta-G solvation = -3304.501969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.95306 -38.38060 -36.82020 -34.54941 -32.88376 -31.34952 -29.94635 -29.38059 -28.32805 -27.22262 -24.54885 -22.74736 -22.31196 -21.48697 -20.59641 -20.03337 -18.08603 -17.26959 -16.78152 -16.39939 -16.26686 -15.31402 -14.74644 -14.65757 -14.31357 -14.07488 -13.84515 -13.45637 -13.31143 -13.19850 -12.65826 -12.44590 -12.11476 -11.87340 -11.76522 -11.61716 -11.44032 -11.23792 -10.92699 -10.83320 -10.67573 -10.57600 -10.52788 -10.18442 -10.06513 -9.87040 -9.71229 -9.52004 -9.25270 -8.88787 -8.56891 -8.21117 -7.88191 -5.90443 -3.96545 3.35365 3.41994 3.45185 3.83004 4.18044 4.36687 4.49885 4.52235 4.75047 4.81108 5.08361 5.14908 5.27033 5.36741 5.39053 5.45132 5.50267 5.54336 5.57522 5.61096 5.69578 5.73753 5.75086 5.85757 5.94409 6.14879 6.23489 6.33266 6.38462 6.46541 6.72392 6.75041 6.78801 6.94781 6.96389 7.16133 7.39210 7.51054 7.65507 7.74830 7.83985 7.85646 8.12186 8.27326 8.55778 9.07467 9.67806 11.14715 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.004935 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.042804 B = 5672.263757 C = 6421.329926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.108 4.108 11 C -0.148 4.148 12 C 0.092 3.908 13 N -0.667 5.667 14 C 0.098 3.902 15 H 0.054 0.946 16 C 0.091 3.909 17 O -0.553 6.553 18 C -0.117 4.117 19 H 0.102 0.898 20 C -0.148 4.148 21 C 0.051 3.949 22 O -0.384 6.384 23 C 0.048 3.952 24 C -0.104 4.104 25 C -0.106 4.106 26 H 0.258 0.742 27 H 0.022 0.978 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.351 0.649 34 H 0.038 0.962 35 H 0.044 0.956 36 H 0.368 0.632 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.087 0.913 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.824 -17.123 -7.953 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.146 4.146 11 C -0.187 4.187 12 C -0.017 4.017 13 N -0.302 5.302 14 C -0.012 4.012 15 H 0.071 0.929 16 C 0.012 3.988 17 O -0.356 6.356 18 C -0.136 4.136 19 H 0.120 0.880 20 C -0.186 4.186 21 C -0.026 4.026 22 O -0.304 6.304 23 C -0.029 4.029 24 C -0.142 4.142 25 C -0.144 4.144 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.174 0.826 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.213 0.787 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.105 0.895 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.802 -16.555 -8.000 18.599 hybrid contribution 0.430 0.304 0.415 0.670 sum 3.233 -16.252 -7.585 18.224 Atomic orbital electron populations 1.69884 1.05810 1.26157 1.50988 1.24941 0.94793 0.98876 0.95260 0.86680 0.79892 0.83872 0.78046 1.20752 1.21372 1.20068 1.21220 0.92764 0.90841 1.50209 0.92974 1.18655 0.92541 0.91144 0.94565 1.21629 0.98711 0.94542 0.99687 1.22231 0.99087 0.98320 0.99104 1.21583 0.94258 0.98482 0.87398 1.60664 1.25897 1.07135 1.36535 1.21519 0.91898 0.92423 0.95405 0.92851 1.22168 0.97996 0.92729 0.85863 1.86612 1.64486 1.54935 1.29573 1.22847 0.93960 0.96213 1.00537 0.87953 1.23329 0.95311 0.97298 1.02709 1.23336 0.95766 0.90990 0.92475 1.88408 1.31218 1.50688 1.60072 1.23326 0.83024 0.96990 0.99514 1.21580 0.96715 0.96204 0.99674 1.21538 0.99554 0.94809 0.98458 0.93189 0.95962 0.93522 0.93730 0.92005 0.94168 0.92506 0.82565 0.94408 0.93813 0.78664 0.89881 0.90641 0.92271 0.90068 0.91213 0.90754 0.93350 0.93179 0.89457 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.08 8.56 -34.44 -0.29 -14.38 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 10 C -0.11 -2.19 4.89 -26.73 -0.13 -2.33 16 11 C -0.15 -2.53 5.51 -26.73 -0.15 -2.67 16 12 C 0.09 1.53 2.64 -67.72 -0.18 1.35 16 13 N -0.67 -10.62 5.48 -99.74 -0.55 -11.16 16 14 C 0.10 1.25 1.63 -67.71 -0.11 1.14 16 15 H 0.05 0.67 7.21 -51.93 -0.37 0.30 16 16 C 0.09 1.02 6.55 37.16 0.24 1.26 16 17 O -0.55 -6.63 12.75 -35.23 -0.45 -7.08 16 18 C -0.12 -1.43 2.46 -88.53 -0.22 -1.65 16 19 H 0.10 1.40 7.58 -51.93 -0.39 1.01 16 20 C -0.15 -1.44 5.85 -24.34 -0.14 -1.58 16 21 C 0.05 0.53 7.77 38.18 0.30 0.83 16 22 O -0.38 -5.48 11.36 -35.23 -0.40 -5.88 16 23 C 0.05 0.66 6.19 37.88 0.23 0.90 16 24 C -0.10 -2.01 5.64 -26.71 -0.15 -2.16 16 25 C -0.11 -2.48 4.75 -26.70 -0.13 -2.60 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.89 6.25 -51.93 -0.32 0.57 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.04 0.61 7.54 -51.93 -0.39 0.22 16 32 H 0.06 0.85 7.12 -51.93 -0.37 0.48 16 33 H 0.35 6.09 4.14 -39.29 -0.16 5.93 16 34 H 0.04 0.34 7.62 -51.93 -0.40 -0.06 16 35 H 0.04 0.50 7.42 -51.93 -0.39 0.12 16 36 H 0.37 2.77 9.12 45.56 0.42 3.19 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.01 7.81 -51.93 -0.41 0.60 16 42 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 46 H 0.04 0.97 7.25 -51.93 -0.38 0.59 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -30.09 344.10 -8.86 -38.95 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.24 Total: 7.59 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -1.01 Total: -19.23 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.08 Total: -36.11 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.85 Total: -12.96 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.09 -8.86 -38.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.186 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds