Wall clock time and date at job start Tue Mar 31 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00130 * 2 1 4 4 H 1.48495 * 109.47149 * 269.72468 * 3 2 1 5 5 H 1.48500 * 109.47236 * 29.72611 * 3 2 1 6 6 H 1.48501 * 109.46914 * 149.72695 * 3 2 1 7 7 C 1.37879 * 120.00240 * 179.72515 * 2 1 3 8 8 H 1.07994 * 120.00784 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99473 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47073 * 299.99616 * 9 7 2 11 11 C 1.52995 * 109.47386 * 300.00430 * 10 9 7 12 12 C 1.53005 * 109.46836 * 299.99846 * 11 10 9 13 13 N 1.46898 * 109.46973 * 180.02562 * 12 11 10 14 14 C 1.46901 * 111.00002 * 84.99682 * 13 12 11 15 15 H 1.08998 * 109.47228 * 325.00197 * 14 13 12 16 16 C 1.53001 * 109.46908 * 85.00032 * 14 13 12 17 17 O 1.42900 * 109.47043 * 64.41752 * 16 14 13 18 18 C 1.52997 * 109.47371 * 204.99765 * 14 13 12 19 19 H 1.08994 * 110.75493 * 300.95477 * 18 14 13 20 20 C 1.55311 * 110.84694 * 64.64695 * 18 14 13 21 21 C 1.54942 * 100.94150 * 152.32181 * 20 18 14 22 22 O 1.43640 * 105.14249 * 323.55625 * 21 20 18 23 23 C 1.43246 * 109.96834 * 24.42679 * 22 21 20 24 24 C 1.52998 * 109.47076 * 60.00095 * 12 11 10 25 25 C 1.52995 * 109.47211 * 299.99676 * 24 12 11 26 26 H 0.97000 * 119.99849 * 0.27686 * 1 2 3 27 27 H 1.08994 * 109.47658 * 59.99838 * 9 7 2 28 28 H 1.09004 * 109.46545 * 60.00774 * 10 9 7 29 29 H 1.09005 * 109.46711 * 179.97438 * 10 9 7 30 30 H 1.08994 * 109.47089 * 179.97438 * 11 10 9 31 31 H 1.08991 * 109.47286 * 59.99566 * 11 10 9 32 32 H 1.09005 * 109.47080 * 299.99926 * 12 11 10 33 33 H 1.00906 * 111.00276 * 321.04986 * 13 12 11 34 34 H 1.09002 * 109.47453 * 184.41414 * 16 14 13 35 35 H 1.08992 * 109.47260 * 304.41932 * 16 14 13 36 36 H 0.96703 * 114.00122 * 180.02562 * 17 16 14 37 37 H 1.09001 * 111.12543 * 270.24708 * 20 18 14 38 38 H 1.09002 * 111.12023 * 34.40734 * 20 18 14 39 39 H 1.09002 * 110.31128 * 204.63887 * 21 20 18 40 40 H 1.08997 * 110.39170 * 82.51690 * 21 20 18 41 41 H 1.09004 * 109.83120 * 238.77643 * 23 22 21 42 42 H 1.08996 * 109.83053 * 117.80021 * 23 22 21 43 43 H 1.09003 * 109.46877 * 180.02562 * 24 12 11 44 44 H 1.08997 * 109.47200 * 59.99664 * 24 12 11 45 45 H 1.09005 * 109.47225 * 300.00341 * 25 24 12 46 46 H 1.09003 * 109.47335 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5025 2.0430 -1.4000 5 1 1.4437 2.6544 0.6942 6 1 3.5438 1.4418 0.7058 7 6 2.0045 -1.1940 0.0057 8 1 3.0845 -1.1941 0.0061 9 6 1.2510 -2.4991 0.0114 10 6 0.3709 -2.5744 1.2608 11 6 1.2500 -2.4876 2.5099 12 6 2.2443 -3.6506 2.5156 13 7 3.0880 -3.5677 3.7152 14 6 2.4324 -4.2050 4.8650 15 1 1.3565 -4.0399 4.8073 16 6 2.7193 -5.7078 4.8471 17 8 4.1200 -5.9274 5.0261 18 6 2.9728 -3.5980 6.1613 19 1 4.0515 -3.7369 6.2325 20 6 2.5964 -2.0949 6.2667 21 6 2.5590 -1.9083 7.8044 22 8 2.0211 -3.1369 8.3185 23 6 2.2589 -4.2015 7.3900 24 6 3.1243 -3.5753 1.2663 25 6 2.2452 -3.6621 0.0172 26 1 -0.4850 0.8401 -0.0041 27 1 0.6246 -2.5609 -0.8785 28 1 -0.3374 -1.7459 1.2566 29 1 -0.1745 -3.5182 1.2646 30 1 0.6230 -2.5408 3.3999 31 1 1.7950 -1.5438 2.5058 32 1 1.6992 -4.5946 2.5197 33 1 3.3295 -2.6100 3.9220 34 1 2.1696 -6.1923 5.6541 35 1 2.4052 -6.1263 3.8911 36 1 4.3752 -6.8601 5.0249 37 1 3.3620 -1.4655 5.8130 38 1 1.6191 -1.9027 5.8238 39 1 1.9115 -1.0721 8.0684 40 1 3.5645 -1.7442 8.1916 41 1 1.3110 -4.6455 7.0858 42 1 2.8926 -4.9592 7.8506 43 1 3.8323 -4.4041 1.2701 44 1 3.6693 -2.6313 1.2622 45 1 1.7001 -4.6060 0.0213 46 1 2.8722 -3.6088 -0.8729 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:03 Heat of formation + Delta-G solvation = -116.734505 kcal Electronic energy + Delta-G solvation = -24132.326535 eV Core-core repulsion = 20827.711770 eV Total energy + Delta-G solvation = -3304.614765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89530 -38.23841 -36.87401 -34.87264 -32.71400 -31.41340 -30.09627 -29.50281 -28.07460 -26.73472 -24.66706 -23.03419 -22.05615 -21.48122 -20.44708 -20.01932 -18.71642 -17.43192 -16.77119 -16.37254 -15.67220 -15.04610 -14.89380 -14.65922 -14.47262 -14.22063 -13.74218 -13.30390 -13.28936 -13.18337 -12.67318 -12.51355 -12.29470 -11.85146 -11.56763 -11.50444 -11.34010 -11.05405 -10.92023 -10.88912 -10.69112 -10.57746 -10.55263 -10.28589 -10.05693 -9.87571 -9.66354 -9.61414 -9.16408 -8.97132 -8.67621 -8.29776 -7.80415 -5.95816 -3.99865 3.29536 3.37059 3.39806 3.79475 4.17786 4.43593 4.44912 4.48538 4.64510 4.94410 5.10194 5.13311 5.26424 5.34436 5.36446 5.49981 5.55545 5.62239 5.65135 5.65699 5.79820 5.82796 5.87862 5.92131 6.08775 6.22583 6.34289 6.45925 6.51081 6.54529 6.76808 6.79207 6.88898 6.90111 7.13508 7.20680 7.33178 7.49926 7.60921 7.71492 7.76158 7.81773 7.96011 8.16899 8.50974 9.03027 9.63225 11.09975 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.005134 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.543500 B = 5452.591021 C = 6384.789454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.498 4.498 8 H 0.055 0.945 9 C 0.043 3.957 10 C -0.104 4.104 11 C -0.125 4.125 12 C 0.093 3.907 13 N -0.673 5.673 14 C 0.099 3.901 15 H 0.058 0.942 16 C 0.087 3.913 17 O -0.555 6.555 18 C -0.115 4.115 19 H 0.101 0.899 20 C -0.159 4.159 21 C 0.053 3.947 22 O -0.388 6.388 23 C 0.059 3.941 24 C -0.090 4.090 25 C -0.107 4.107 26 H 0.258 0.742 27 H 0.023 0.977 28 H 0.089 0.911 29 H 0.011 0.989 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.341 0.659 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.369 0.631 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.068 0.932 45 H 0.030 0.970 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.335 -9.117 12.419 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.025 3.975 10 C -0.143 4.143 11 C -0.164 4.164 12 C -0.016 4.016 13 N -0.304 5.304 14 C -0.011 4.011 15 H 0.075 0.925 16 C 0.009 3.991 17 O -0.358 6.358 18 C -0.134 4.134 19 H 0.119 0.881 20 C -0.197 4.197 21 C -0.023 4.023 22 O -0.308 6.308 23 C -0.018 4.018 24 C -0.128 4.128 25 C -0.145 4.145 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.108 0.892 29 H 0.030 0.970 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.160 0.840 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.214 0.786 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.087 0.913 45 H 0.049 0.951 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.461 -8.910 12.489 15.977 hybrid contribution -0.262 1.046 -0.100 1.083 sum 4.199 -7.865 12.389 15.264 Atomic orbital electron populations 1.69869 1.05824 1.26100 1.51378 1.24939 0.94737 0.98763 0.95583 0.86742 0.79953 0.84100 0.78104 1.20828 1.21448 1.19977 1.21159 0.92740 0.90395 1.49326 0.92661 1.18692 0.92711 0.92234 0.93903 1.21452 0.98661 0.99211 0.94937 1.22024 0.97801 0.99030 0.97574 1.21640 0.92653 0.97735 0.89580 1.60676 1.44220 1.22795 1.02675 1.21485 0.96471 0.93131 0.90007 0.92453 1.22229 0.82320 0.95798 0.98776 1.86580 1.23520 1.29589 1.96154 1.22783 1.02316 0.94148 0.94191 0.88115 1.23407 1.03313 0.96465 0.96521 1.23335 0.98743 0.87423 0.92795 1.88375 1.80390 1.17638 1.44382 1.23153 0.99473 0.90178 0.88996 1.21311 0.97120 1.01213 0.93119 1.21565 0.98284 0.98356 0.96333 0.93232 0.95918 0.89233 0.96982 0.95564 0.90953 0.92350 0.84014 0.94254 0.93575 0.78610 0.89457 0.90130 0.89841 0.92221 0.91561 0.91429 0.93972 0.91331 0.95076 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 3 Si 0.88 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.50 -13.01 6.61 -34.44 -0.23 -13.24 16 8 H 0.06 1.45 6.71 -52.49 -0.35 1.10 16 9 C 0.04 1.04 2.59 -91.77 -0.24 0.80 16 10 C -0.10 -2.38 5.24 -26.73 -0.14 -2.52 16 11 C -0.13 -2.49 4.94 -26.73 -0.13 -2.62 16 12 C 0.09 1.63 2.27 -67.71 -0.15 1.48 16 13 N -0.67 -10.34 6.00 -99.74 -0.60 -10.94 16 14 C 0.10 1.30 1.62 -67.71 -0.11 1.19 16 15 H 0.06 0.79 7.11 -51.93 -0.37 0.42 16 16 C 0.09 1.01 6.50 37.16 0.24 1.26 16 17 O -0.55 -6.52 12.80 -35.23 -0.45 -6.97 16 18 C -0.12 -1.37 2.41 -88.67 -0.21 -1.59 16 19 H 0.10 1.30 7.67 -51.93 -0.40 0.90 16 20 C -0.16 -1.86 5.71 -24.48 -0.14 -2.00 16 21 C 0.05 0.59 7.78 38.18 0.30 0.89 16 22 O -0.39 -5.10 11.36 -35.23 -0.40 -5.50 16 23 C 0.06 0.68 6.55 37.88 0.25 0.93 16 24 C -0.09 -1.71 5.30 -26.73 -0.14 -1.85 16 25 C -0.11 -2.21 5.41 -26.73 -0.14 -2.35 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.03 0.48 7.43 -51.93 -0.39 0.10 16 31 H 0.07 1.60 7.20 -51.93 -0.37 1.23 16 32 H 0.06 1.02 7.10 -51.93 -0.37 0.65 16 33 H 0.34 5.32 6.98 -39.29 -0.27 5.05 16 34 H 0.04 0.38 7.34 -51.93 -0.38 0.00 16 35 H 0.05 0.57 7.38 -51.93 -0.38 0.18 16 36 H 0.37 2.71 9.12 45.56 0.42 3.13 16 37 H 0.09 0.98 7.85 -51.93 -0.41 0.57 16 38 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.73 7.56 -51.93 -0.39 0.33 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 344.16 15.07 5.19 5.19 Total: -1.00 -28.77 344.16 -8.87 -37.64 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.26 Total: 7.10 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -0.95 Total: -18.10 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.03 Total: -35.26 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.85 Total: -12.47 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.77 -8.87 -37.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.094 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds