Wall clock time and date at job start Tue Mar 31 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 O 1.42971 * 109.47210 * 119.99813 * 2 1 3 5 5 C 1.43092 * 113.76830 * 178.79116 * 4 2 1 6 6 C 1.53259 * 108.94588 * 302.03367 * 5 4 2 7 7 N 1.46898 * 109.57331 * 174.32984 * 6 5 4 8 8 C 1.46905 * 110.99700 * 85.75124 * 7 6 5 9 9 C 1.52998 * 109.46881 * 206.76168 * 8 7 6 10 10 C 1.53002 * 109.47169 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47368 * 59.99424 * 10 9 8 12 12 C 1.50701 * 109.46909 * 60.00485 * 11 10 9 13 13 H 1.07994 * 120.00156 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99761 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00285 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99757 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47270 * 90.00086 * 16 14 12 18 18 H 1.48501 * 109.47027 * 209.99939 * 16 14 12 19 19 H 1.48497 * 109.46984 * 329.99646 * 16 14 12 20 20 C 1.52998 * 109.47446 * 300.00407 * 11 10 9 21 21 C 1.52998 * 109.47245 * 86.75844 * 8 7 6 22 22 C 1.53265 * 108.84406 * 54.52336 * 6 5 4 23 23 O 1.42967 * 109.46958 * 240.00194 * 2 1 3 24 24 H 1.09008 * 109.46903 * 299.99962 * 1 2 3 25 25 H 1.08993 * 109.47240 * 59.99724 * 1 2 3 26 26 H 1.08999 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46934 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47279 * 300.00252 * 3 2 1 29 29 H 1.08999 * 109.46935 * 60.00155 * 3 2 1 30 30 H 1.09002 * 109.55932 * 182.19496 * 5 4 2 31 31 H 1.09004 * 109.55552 * 61.87542 * 5 4 2 32 32 H 1.08997 * 109.57588 * 294.58876 * 6 5 4 33 33 H 1.00898 * 111.00099 * 209.69822 * 7 6 5 34 34 H 1.08995 * 109.47016 * 326.76099 * 8 7 6 35 35 H 1.08997 * 109.47750 * 59.99841 * 9 8 7 36 36 H 1.08998 * 109.46937 * 299.99368 * 9 8 7 37 37 H 1.09003 * 109.46929 * 299.99853 * 10 9 8 38 38 H 1.08993 * 109.47276 * 180.02562 * 10 9 8 39 39 H 1.09007 * 109.47045 * 180.02562 * 11 10 9 40 40 H 0.96999 * 120.00386 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.47750 * 179.97438 * 20 11 10 42 42 H 1.09006 * 109.46772 * 300.00134 * 20 11 10 43 43 H 1.08993 * 109.47499 * 300.00140 * 21 8 7 44 44 H 1.09006 * 109.47244 * 59.99823 * 21 8 7 45 45 H 1.09001 * 109.55805 * 65.31536 * 22 6 5 46 46 H 1.08997 * 109.55385 * 185.63787 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0066 -0.6739 1.1674 5 6 3.4332 -0.7515 1.2465 6 6 3.9624 -1.4691 0.0000 7 7 5.4310 -1.4371 -0.0001 8 6 5.9819 -2.5547 0.7781 9 6 7.3590 -2.1681 1.3212 10 6 7.9331 -3.3323 2.1312 11 6 8.0666 -4.5626 1.2316 12 6 8.9892 -4.2470 0.0826 13 1 9.4353 -3.2668 0.0018 14 6 9.2638 -5.2097 -0.8655 15 7 8.7209 -6.4035 -0.7669 16 14 10.4080 -4.8186 -2.2894 17 1 11.8043 -5.1506 -1.9079 18 1 10.0147 -5.6213 -3.4752 19 1 10.3146 -3.3733 -2.6169 20 6 6.6895 -4.9493 0.6885 21 6 6.1153 -3.7854 -0.1210 22 6 3.4331 -0.7514 -1.2466 23 8 2.0065 -0.6739 -1.1674 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.7194 -1.3096 2.1379 31 1 3.8512 0.2541 1.2937 32 1 3.6196 -2.5038 0.0011 33 1 5.7927 -1.4395 -0.9420 34 1 5.3145 -2.7826 1.6092 35 1 7.2640 -1.2913 1.9618 36 1 8.0264 -1.9403 0.4902 37 1 7.2657 -3.5606 2.9623 38 1 8.9139 -3.0567 2.5185 39 1 8.4752 -5.3922 1.8088 40 1 8.9138 -7.0806 -1.4341 41 1 6.7846 -5.8255 0.0473 42 1 6.0222 -5.1775 1.5197 43 1 5.1343 -4.0609 -0.5079 44 1 6.7828 -3.5575 -0.9522 45 1 3.8512 0.2541 -1.2938 46 1 3.7193 -1.3096 -2.1380 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:07 Heat of formation + Delta-G solvation = -111.424685 kcal Electronic energy + Delta-G solvation = -24008.923367 eV Core-core repulsion = 20704.538853 eV Total energy + Delta-G solvation = -3304.384514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.51185 -38.22990 -35.75382 -35.37648 -32.74964 -31.81581 -29.84320 -29.47488 -27.85155 -26.63435 -26.10017 -24.53331 -22.32124 -21.47972 -20.61716 -19.75048 -18.71719 -17.71399 -16.52103 -16.00605 -15.84202 -15.33283 -15.12073 -14.72876 -14.37028 -13.66924 -13.53589 -13.20710 -13.17088 -13.03621 -12.86530 -12.57674 -12.42214 -12.39458 -12.04353 -11.72742 -11.63848 -11.39353 -11.04925 -11.00474 -10.97512 -10.86789 -10.58258 -10.35950 -10.08734 -10.00639 -9.70216 -9.56301 -9.18840 -9.00202 -8.69109 -8.31569 -7.96857 -5.96170 -4.00639 3.29312 3.36960 3.39059 3.46398 3.54009 4.33325 4.44372 4.52383 4.65895 4.68438 4.88375 5.11809 5.22620 5.34055 5.39077 5.41684 5.44494 5.47796 5.56425 5.64326 5.70431 5.82077 5.83524 5.94931 6.02269 6.05535 6.28975 6.39736 6.44034 6.52435 6.71096 6.76573 6.77724 6.87475 7.08042 7.14039 7.17779 7.29663 7.46149 7.55499 7.65151 7.76406 7.94856 8.16544 8.50035 9.02345 9.62585 11.09615 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027874 B = 0.003971 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.293039 B = 7049.176309 C = 7357.167819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.264 3.736 3 C -0.206 4.206 4 O -0.388 6.388 5 C 0.068 3.932 6 C 0.021 3.979 7 N -0.677 5.677 8 C 0.093 3.907 9 C -0.091 4.091 10 C -0.107 4.107 11 C 0.043 3.957 12 C -0.500 4.500 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.883 3.117 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.104 4.104 21 C -0.126 4.126 22 C 0.055 3.945 23 O -0.386 6.386 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.344 0.656 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.047 0.953 39 H 0.023 0.977 40 H 0.258 0.742 41 H 0.090 0.910 42 H 0.013 0.987 43 H 0.028 0.972 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.164 13.106 1.140 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.187 3.813 3 C -0.264 4.264 4 O -0.308 6.308 5 C -0.009 4.009 6 C -0.090 4.090 7 N -0.310 5.310 8 C -0.016 4.016 9 C -0.129 4.129 10 C -0.146 4.146 11 C 0.025 3.975 12 C -0.538 4.538 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.712 3.288 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.143 4.143 21 C -0.165 4.165 22 C -0.022 4.022 23 O -0.306 6.306 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.163 0.837 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.031 0.969 43 H 0.046 0.954 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.421 13.257 1.561 18.929 hybrid contribution 0.950 -0.517 -1.495 1.845 sum -12.471 12.740 0.067 17.828 Atomic orbital electron populations 1.21594 0.89910 1.03945 1.03008 1.22734 0.94377 0.87905 0.76292 1.22840 1.03049 0.96875 1.03633 1.88131 1.21873 1.78310 1.42496 1.22688 0.79335 1.00557 0.98353 1.22630 0.90392 0.99820 0.96138 1.60637 1.03567 1.47231 1.19549 1.21670 0.96242 0.88413 0.95241 1.21336 0.94975 0.96880 0.99672 1.21563 0.98365 0.97325 0.97311 1.18688 0.92934 0.92038 0.93847 1.21163 1.26478 0.98011 1.08182 0.92637 1.24947 0.96008 0.95131 0.97943 1.69870 1.43968 1.03670 1.35577 0.86731 0.81422 0.78258 0.82407 1.20832 1.21437 1.19990 1.21443 0.96382 0.98595 0.97832 1.22006 0.98451 0.96342 0.99665 1.22838 0.80659 1.00615 0.98077 1.88133 1.21160 1.78414 1.42863 0.90355 0.90428 0.90945 0.91186 0.90727 0.90629 0.88527 0.91881 0.91910 0.83733 0.92018 0.93989 0.91188 0.94953 0.93422 0.95868 0.93195 0.89189 0.96873 0.95364 0.90848 0.91781 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 9.21 37.16 0.34 -0.85 16 2 C 0.26 3.11 1.50 -26.73 -0.04 3.07 16 3 C -0.21 -1.98 8.11 37.16 0.30 -1.68 16 4 O -0.39 -5.33 10.35 -59.03 -0.61 -5.95 16 5 C 0.07 0.90 6.07 37.29 0.23 1.13 16 6 C 0.02 0.29 2.70 -67.44 -0.18 0.11 16 7 N -0.68 -9.99 6.07 -99.46 -0.60 -10.59 16 8 C 0.09 1.62 2.28 -67.71 -0.15 1.47 16 9 C -0.09 -1.67 5.30 -26.73 -0.14 -1.82 16 10 C -0.11 -2.19 5.41 -26.73 -0.14 -2.33 16 11 C 0.04 1.04 2.59 -91.77 -0.24 0.81 16 12 C -0.50 -13.02 6.61 -34.44 -0.23 -13.25 16 13 H 0.06 1.44 6.71 -52.49 -0.35 1.09 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 15 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 16 Si 0.88 20.86 29.54 -169.99 -5.02 15.84 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.10 -2.39 5.23 -26.75 -0.14 -2.53 16 21 C -0.13 -2.53 4.94 -26.75 -0.13 -2.66 16 22 C 0.05 0.68 5.87 37.29 0.22 0.90 16 23 O -0.39 -5.17 10.35 -59.03 -0.61 -5.78 16 24 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.71 5.11 -51.93 -0.27 0.44 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 1.31 7.60 -51.93 -0.39 0.92 16 31 H 0.06 0.79 6.53 -51.93 -0.34 0.45 16 32 H 0.06 1.00 7.25 -51.93 -0.38 0.63 16 33 H 0.34 4.99 8.07 -39.29 -0.32 4.67 16 34 H 0.06 1.08 7.23 -51.93 -0.38 0.71 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.03 0.54 7.57 -51.93 -0.39 0.15 16 44 H 0.07 1.62 7.20 -51.93 -0.37 1.25 16 45 H 0.06 0.73 6.53 -51.93 -0.34 0.39 16 46 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 340.44 15.07 5.13 5.13 Total: -1.00 -27.77 340.44 -9.47 -37.23 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.97 Total: 4.60 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -0.41 Total: -16.12 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.02 Total: -34.96 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -1.22 Total: -11.73 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.77 -9.47 -37.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.192 kcal (2) G-P(sol) polarization free energy of solvation -27.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds