Wall clock time and date at job start Tue Mar 31 2020 05:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99945 * 2 1 4 4 H 1.48503 * 109.47037 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47460 * 299.99566 * 3 2 1 6 6 H 1.48505 * 109.47093 * 60.00037 * 3 2 1 7 7 C 1.37875 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00375 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00458 * 0.02562 * 7 2 1 10 10 C 1.52990 * 109.47645 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47042 * 299.99379 * 10 9 7 12 12 C 1.52996 * 109.47318 * 300.00496 * 11 10 9 13 13 N 1.46905 * 109.47003 * 179.97438 * 12 11 10 14 14 C 1.46844 * 110.99939 * 298.94950 * 13 12 11 15 15 C 1.53035 * 109.52281 * 185.84310 * 14 13 12 16 16 C 1.53121 * 109.27585 * 300.82017 * 15 14 13 17 17 H 1.09000 * 109.52606 * 297.75100 * 16 15 14 18 18 O 1.42908 * 109.52326 * 177.56133 * 16 15 14 19 19 C 1.53113 * 109.16333 * 57.65861 * 16 15 14 20 20 H 1.08997 * 109.50521 * 62.31968 * 19 16 15 21 21 C 1.52999 * 109.50805 * 182.40573 * 19 16 15 22 22 O 1.42905 * 109.46728 * 294.99896 * 21 19 16 23 23 C 1.46846 * 110.99953 * 63.16372 * 13 12 11 24 24 C 1.53002 * 109.47306 * 59.99581 * 12 11 10 25 25 C 1.52993 * 109.46892 * 299.99998 * 24 12 11 26 26 H 0.96999 * 120.00012 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.46624 * 300.00126 * 9 7 2 28 28 H 1.09000 * 109.47494 * 179.97438 * 10 9 7 29 29 H 1.09001 * 109.47667 * 59.99673 * 10 9 7 30 30 H 1.08999 * 109.47566 * 179.97438 * 11 10 9 31 31 H 1.09010 * 109.46981 * 60.00153 * 11 10 9 32 32 H 1.09000 * 109.46876 * 299.99248 * 12 11 10 33 33 H 1.09000 * 109.46133 * 65.82691 * 14 13 12 34 34 H 1.09001 * 109.46136 * 305.85565 * 14 13 12 35 35 H 1.09000 * 109.50589 * 180.88141 * 15 14 13 36 36 H 1.08993 * 109.53779 * 60.78135 * 15 14 13 37 37 H 0.96703 * 114.00001 * 60.31342 * 18 16 15 38 38 H 1.09000 * 109.47486 * 174.99835 * 21 19 16 39 39 H 1.09001 * 109.47362 * 54.99112 * 21 19 16 40 40 H 0.96696 * 114.00036 * 179.97438 * 22 21 19 41 41 H 1.08994 * 109.46521 * 54.14781 * 23 13 12 42 42 H 1.09002 * 109.45768 * 294.17026 * 23 13 12 43 43 H 1.08997 * 109.46767 * 60.00342 * 24 12 11 44 44 H 1.09001 * 109.46803 * 179.97438 * 24 12 11 45 45 H 1.08997 * 109.47696 * 299.99775 * 25 24 12 46 46 H 1.08999 * 109.47184 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 3.1258 -3.5816 -1.2469 12 6 2.2471 -3.6632 -2.4967 13 7 3.0925 -3.5854 -3.6956 14 6 3.8241 -2.3130 -3.7418 15 6 4.5780 -2.2046 -5.0692 16 6 5.5517 -3.3796 -5.1949 17 1 6.2868 -3.3313 -4.3915 18 8 6.2177 -3.3150 -6.4577 19 6 4.7704 -4.6927 -5.0952 20 1 4.0628 -4.7588 -5.9216 21 6 5.7430 -5.8720 -5.1597 22 8 6.3702 -5.9024 -6.4434 23 6 4.0108 -4.7290 -3.7670 24 6 1.2528 -2.5003 -2.4979 25 6 0.3723 -2.5808 -1.2493 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 0.8904 28 1 1.7003 -4.6061 0.0023 29 1 2.8714 -3.6040 0.8922 30 1 3.8344 -4.4098 -1.2458 31 1 3.6708 -2.6376 -1.2469 32 1 1.7021 -4.6072 -2.4967 33 1 4.5346 -2.2724 -2.9162 34 1 3.1197 -1.4857 -3.6557 35 1 5.1335 -1.2672 -5.0967 36 1 3.8674 -2.2308 -5.8952 37 1 6.7333 -2.5076 -6.5895 38 1 5.1974 -6.8021 -4.9998 39 1 6.5030 -5.7590 -4.3866 40 1 7.0016 -6.6261 -6.5556 41 1 3.4421 -5.6563 -3.6992 42 1 4.7205 -4.6770 -2.9413 43 1 1.7978 -1.5563 -2.4980 44 1 0.6271 -2.5582 -3.3886 45 1 -0.1727 -3.5247 -1.2492 46 1 -0.3363 -1.7526 -1.2504 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:42 Heat of formation + Delta-G solvation = -114.030326 kcal Electronic energy + Delta-G solvation = -24369.135023 eV Core-core repulsion = 21064.637519 eV Total energy + Delta-G solvation = -3304.497503 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88691 -37.90449 -36.33121 -35.56956 -32.79741 -31.69485 -31.01694 -29.67293 -27.88876 -25.55104 -24.76578 -23.39534 -22.30161 -21.56110 -20.14935 -19.55423 -18.36117 -17.41202 -16.97698 -15.76662 -15.75661 -15.35901 -14.79275 -14.44415 -14.40081 -13.93481 -13.82977 -13.32868 -13.26945 -12.90053 -12.58133 -12.47106 -12.00752 -11.98397 -11.45527 -11.30421 -11.15524 -11.07815 -10.96821 -10.86365 -10.79715 -10.54917 -10.36432 -10.16316 -10.05646 -9.91133 -9.70293 -9.46630 -9.23390 -8.89459 -8.62993 -8.27583 -7.80613 -5.96974 -4.01328 3.27175 3.36445 3.38355 3.90841 4.27442 4.43268 4.47334 4.71334 4.94543 5.15070 5.27098 5.33571 5.34529 5.42346 5.45853 5.48586 5.57504 5.61641 5.76993 5.81407 5.91828 5.94196 6.06164 6.16881 6.23883 6.33845 6.38621 6.48327 6.52455 6.61923 6.72272 6.77578 6.85109 7.05367 7.15100 7.36223 7.50067 7.55114 7.61163 7.65430 7.75586 7.77252 7.95752 8.17788 8.49192 9.01097 9.61831 11.08918 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.023316 B = 0.004837 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.617298 B = 5787.048051 C = 6458.636953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.499 4.499 8 H 0.053 0.947 9 C 0.043 3.957 10 C -0.102 4.102 11 C -0.137 4.137 12 C 0.093 3.907 13 N -0.532 5.532 14 C 0.051 3.949 15 C -0.150 4.150 16 C 0.114 3.886 17 H 0.045 0.955 18 O -0.547 6.547 19 C -0.077 4.077 20 H 0.091 0.909 21 C 0.086 3.914 22 O -0.551 6.551 23 C 0.064 3.936 24 C -0.092 4.092 25 C -0.107 4.107 26 H 0.258 0.742 27 H 0.023 0.977 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.034 0.966 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.366 0.634 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.368 0.632 41 H 0.077 0.923 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.040 0.960 45 H 0.014 0.986 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.166 -8.990 -8.987 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.025 3.975 10 C -0.141 4.141 11 C -0.176 4.176 12 C -0.015 4.015 13 N -0.255 5.255 14 C -0.077 4.077 15 C -0.188 4.188 16 C 0.055 3.945 17 H 0.063 0.937 18 O -0.351 6.351 19 C -0.096 4.096 20 H 0.109 0.891 21 C 0.007 3.993 22 O -0.354 6.354 23 C -0.065 4.065 24 C -0.130 4.130 25 C -0.145 4.145 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.211 0.789 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.213 0.787 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.032 0.968 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.029 -8.938 -9.570 15.906 hybrid contribution 1.612 1.066 1.038 2.194 sum 10.642 -7.871 -8.532 15.748 Atomic orbital electron populations 1.69873 1.05778 1.26051 1.51164 1.24919 0.94728 0.98690 0.95517 0.86717 0.80177 0.84590 0.77616 1.19973 1.21078 1.21153 1.21145 0.92565 0.90455 1.49601 0.92920 1.18697 0.92673 0.92003 0.94167 1.21490 0.98140 0.98705 0.95735 1.22071 0.98285 1.00732 0.96503 1.21760 0.93635 1.00032 0.86056 1.62206 1.21773 1.01203 1.40283 1.22108 0.96944 0.93342 0.95257 1.22365 0.99089 0.97900 0.99416 1.21755 0.92485 0.94644 0.85611 0.93725 1.86712 1.67852 1.44265 1.36235 1.21146 0.96419 0.92700 0.99346 0.89098 1.22048 0.94685 0.97259 0.85282 1.86701 1.60889 1.54422 1.33423 1.21922 0.94661 0.95400 0.94521 1.21450 0.96590 0.97294 0.97674 1.21505 0.98679 0.99467 0.94868 0.93198 0.95849 0.94864 0.93806 0.94713 0.90956 0.91319 0.94433 0.89195 0.91658 0.90448 0.78880 0.93903 0.94277 0.78731 0.90451 0.94476 0.90921 0.94155 0.96755 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.71 11.32 55.43 0.63 -24.08 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.88 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.50 -12.92 6.61 -34.44 -0.23 -13.14 16 8 H 0.05 1.37 6.71 -52.49 -0.35 1.02 16 9 C 0.04 1.03 2.59 -91.77 -0.24 0.79 16 10 C -0.10 -2.07 5.41 -26.74 -0.14 -2.22 16 11 C -0.14 -2.51 4.29 -26.73 -0.11 -2.62 16 12 C 0.09 1.64 2.25 -67.71 -0.15 1.48 16 13 N -0.53 -8.39 4.66 -226.69 -1.06 -9.44 16 14 C 0.05 0.80 4.65 -3.84 -0.02 0.79 16 15 C -0.15 -1.99 5.72 -26.65 -0.15 -2.14 16 16 C 0.11 1.47 2.95 -26.61 -0.08 1.39 16 17 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 18 O -0.55 -7.05 11.67 -55.48 -0.65 -7.70 16 19 C -0.08 -1.00 2.40 -90.54 -0.22 -1.22 16 20 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 21 C 0.09 0.95 6.43 37.16 0.24 1.19 16 22 O -0.55 -6.50 12.02 -55.48 -0.67 -7.17 16 23 C 0.06 0.86 4.26 -3.83 -0.02 0.84 16 24 C -0.09 -1.88 4.73 -26.73 -0.13 -2.01 16 25 C -0.11 -2.44 5.24 -26.73 -0.14 -2.58 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.02 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.57 6.61 -51.93 -0.34 0.22 16 31 H 0.07 1.45 5.03 -51.92 -0.26 1.19 16 32 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 33 H 0.04 0.61 6.65 -51.93 -0.35 0.26 16 34 H 0.09 1.56 5.97 -51.93 -0.31 1.25 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.37 3.27 9.09 45.56 0.41 3.69 16 38 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.37 2.58 9.12 45.56 0.42 2.99 16 41 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 42 H 0.04 0.50 6.69 -51.93 -0.35 0.16 16 43 H 0.07 1.62 5.33 -51.93 -0.28 1.34 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -29.38 334.70 -9.55 -38.92 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.35 Total: 6.58 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -1.48 Total: -17.89 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: -0.43 Total: -33.52 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -1.31 Total: -14.87 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.38 -9.55 -38.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.106 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds